Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012743.1

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Forward (+)

41056 .. 41490

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012743.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgaaagatgcatgggtgcttcactttccattcctctcaccgctgataccatcacccttctccactcaaatcccagtactaccttattttctcaatcaagattacagaacccaatacgtgttcaaattaaaccccactaaccaaatcttcaagacccagttgaagatcatgtctcaaccctctcaagttttgcctgccaatggtggcaaagttgtagctagggagacccaggatgaaagtagcacaaggccaattaatgttgatgggattgatcagggactggttgacaagattgtgtatgatgctcttgtttggagctcaattcatggccttattgttggtgacaggtctgttcagaggtcatcagcaatacctggagtaggaatggtacatgcaccattcgctttaattcccatgtcgtttccagaaagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

144

Amino Acids

16.0

Weight (kDa)

6.82

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	41
AfaI	GTAC	2 cut(s)	78, 390
AfiI	CCNNNNNNNGG	2 cut(s)	200, 380
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	3 cut(s)	124, 151, 163
AjnI	CCWGG	2 cut(s)	228, 373
AluBI	AGCT	2 cut(s)	218, 318
AluI	AGCT	2 cut(s)	218, 318
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	2 cut(s)	177, 218
AlwNI	CAGNNNCTG	1 cut(s)	280
AoxI	GGCC	2 cut(s)	248, 328
AseI	ATTAAT	1 cut(s)	255
AsuHPI	GGTGA	3 cut(s)	30, 45, 353
BanII	GRGCYC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	320
BccI	CCATC	2 cut(s)	58, 257
BciT130I	CCWGG	2 cut(s)	230, 375
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	177, 218
BfaI	CTAG	1 cut(s)	219
BmcAI	AGTACT	1 cut(s)	78
Bme1390I	CCNGG	2 cut(s)	230, 375
BmrFI	CCNGG	2 cut(s)	230, 375
BmrI	ACTGGG	2 cut(s)	68, 151
BmsI	GCATC	1 cut(s)	292
BmuI	ACTGGG	2 cut(s)	68, 151
BpmI	CTGGAG	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	118
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 380
Bse1I	ACTGG	3 cut(s)	74, 157, 285
BseBI	CCWGG	2 cut(s)	230, 375
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	2 cut(s)	200, 380
BseNI	ACTGG	3 cut(s)	74, 157, 285
BshFI	GGCC	2 cut(s)	250, 330
BsiHKAI	GWGCWC	1 cut(s)	320
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	200, 380
BsmAI	GTCTC	2 cut(s)	177, 218
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	2 cut(s)	250, 330
Bso31I	GGTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	2 cut(s)	165, 271
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	2 cut(s)	250, 330
BspTNI	GGTCTC	1 cut(s)	218
BsrI	ACTGG	3 cut(s)	74, 157, 285
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	2 cut(s)	165, 271
Bst2UI	CCWGG	2 cut(s)	230, 375
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	195
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	2 cut(s)	168, 274
BstMAI	GTCTC	2 cut(s)	177, 218
BstMBI	GATC	2 cut(s)	165, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstNI	CCWGG	2 cut(s)	230, 375
BstNSI	RCATGY	1 cut(s)	395
BstSCI	CCNGG	2 cut(s)	228, 373
BsuRI	GGCC	2 cut(s)	250, 330
BtsCI	GGATG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	195
CaiI	CAGNNNCTG	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	77, 389
CviAII	CATG	5 cut(s)	12, 169, 326, 392, 415
CviJI	RGCY	4 cut(s)	218, 250, 318, 330
CviKI_1	RGCY	4 cut(s)	218, 250, 318, 330
CviQI	GTAC	2 cut(s)	77, 389
DpnI	GATC	2 cut(s)	167, 273
DpnII	GATC	2 cut(s)	165, 271
Ecl136II	GAGCTC	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	318
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoRII	CCWGG	2 cut(s)	228, 373
EcoT22I	ATGCAT	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	320
FaeI	CATG	5 cut(s)	15, 172, 329, 395, 418
FaiI	YATR	6 cut(s)	13, 170, 300, 327, 393, 416
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	5 cut(s)	11, 168, 325, 391, 414
FbaI	TGATCA	1 cut(s)	271
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	320
FspBI	CTAG	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	250, 330
Hin1II	CATG	5 cut(s)	15, 172, 329, 395, 418
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HphI	GGTGA	3 cut(s)	30, 45, 353
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	1 cut(s)	357
Hpy188III	TCNNGA	3 cut(s)	98, 151, 425
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	11, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	5 cut(s)	15, 172, 329, 395, 418
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	165, 271
LmnI	GCTCC	1 cut(s)	315
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	2 cut(s)	167, 273
MboI	GATC	2 cut(s)	165, 271
MboII	GAAGA	2 cut(s)	139, 175
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	4 cut(s)	125, 252, 321, 408
MnlI	CCTC	3 cut(s)	44, 190, 351
Mph1103I	ATGCAT	1 cut(s)	13
MseI	TTAA	3 cut(s)	128, 255, 407
MspA1I	CMGCKG	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	230, 375
MvaI	CCWGG	2 cut(s)	230, 375
MwoI	GCNNNNNNNGC	1 cut(s)	401
NdeII	GATC	2 cut(s)	165, 271
NlaIII	CATG	5 cut(s)	15, 172, 329, 395, 418
NmuCI	GTSAC	1 cut(s)	341
NsiI	ATGCAT	1 cut(s)	13
NspI	RCATGY	1 cut(s)	395
Ppu21I	YACGTR	1 cut(s)	118
PshBI	ATTAAT	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	228, 373
PspGI	CCWGG	2 cut(s)	228, 373
PstNI	CAGNNNCTG	1 cut(s)	280
RsaI	GTAC	2 cut(s)	78, 390
RsaNI	GTAC	2 cut(s)	77, 389
SacI	GAGCTC	1 cut(s)	320
SaqAI	TTAA	3 cut(s)	128, 255, 407
Sau3AI	GATC	2 cut(s)	165, 271
ScaI	AGTACT	1 cut(s)	78
ScrFI	CCNGG	2 cut(s)	230, 375
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	7 cut(s)	85, 120, 220, 320, 350, 362, 376
SfaNI	GCATC	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	4 cut(s)	125, 252, 321, 408
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	228, 373
TaiI	ACGT	1 cut(s)	120
TasI	AATT	4 cut(s)	125, 252, 321, 408
TatI	WGTACW	1 cut(s)	76
Tru1I	TTAA	3 cut(s)	128, 255, 407
Tru9I	TTAA	3 cut(s)	128, 255, 407
TseFI	GTSAC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	3 cut(s)	17, 249, 314
VspI	ATTAAT	1 cut(s)	255
XagI	CCTNNNNNAGG	1 cut(s)	378
XceI	RCATGY	1 cut(s)	395
XspI	CTAG	1 cut(s)	219
ZrmI	AGTACT	1 cut(s)	78
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.