Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

9797175 .. 9797956

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG053200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGTCCTTTACATTCCATCCCTCTCACCACTGGTACTGGTACCATCACCCTTCTTCACTCAAATCCCAGAATATCCTTGTTTTCGCAGTCAACAGAGTCAAGATTACAAAACCCAGTGTTCAAATTAAACCCCACCAACCAAATCTTCAAGACCCAGTTGAAGACCATATCTCAATCCTCTCAAGTTCTGCCTGTCAATGGTGGCGAAGTTGTATTTAGGGAGACCCAGGATGAAAGTAGCAAAAGGCCAATTAATGTTGATGGGATTGATCTGGAAGTGGTTGAAAAGATGGTGTATGATGCTCTTATTTGGAGCTCATTTCATGGGCTTGTTGTTGGTGACAGGTCTGTTCAGGTTAGTGATATTGCCAACTCAACTCTTTTCAACTGGAAACCAGAAAAGACTGGAAATTTAAGTTTCTATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

143

Amino Acids

15.85

Weight (kDa)

6.27

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	412
AfaI	GTAC	2 cut(s)	37, 43
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	5 cut(s)	124, 151, 163, 287, 388
AjnI	CCWGG	1 cut(s)	228
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	218
AoxI	GGCC	1 cut(s)	248
ApoI	RAATTY	1 cut(s)	412
AseI	ATTAAT	1 cut(s)	255
Asp718I	GGTACC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	5
AsuHPI	GGTGA	3 cut(s)	19, 40, 353
AvaII	GGWCC	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	170
Bbv12I	GWGCWC	1 cut(s)	320
BccI	CCATC	4 cut(s)	26, 53, 257, 286
BciT130I	CCWGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	2 cut(s)	6, 43
BmrFI	CCNGG	1 cut(s)	230
BmrI	ACTGGG	2 cut(s)	110, 151
BmsI	GCATC	1 cut(s)	292
BmuI	ACTGGG	2 cut(s)	110, 151
BpiI	GAAGAC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	6 cut(s)	37, 43, 116, 157, 395, 412
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	18, 238
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseNI	ACTGG	6 cut(s)	37, 43, 116, 157, 395, 412
BshFI	GGCC	1 cut(s)	250
BshNI	GGYRCC	1 cut(s)	41
BsiHKAI	GWGCWC	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	250
Bso31I	GGTCTC	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	271
BspANI	GGCC	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	6, 43
BspT107I	GGYRCC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	218
BsrI	ACTGG	6 cut(s)	37, 43, 116, 157, 395, 412
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	18, 238
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	271
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstV2I	GAAGAC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	18, 238
BtsIMutI	CAGTG	2 cut(s)	30, 123
Cfr13I	GGNCC	1 cut(s)	5
Csp6I	GTAC	2 cut(s)	36, 42
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	3 cut(s)	250, 318, 331
CviKI_1	RGCY	3 cut(s)	250, 318, 331
CviQI	GTAC	2 cut(s)	36, 42
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Ecl136II	GAGCTC	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	1 cut(s)	218
Eco47I	GGWCC	1 cut(s)	5
Eco53kI	GAGCTC	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	320
FaeI	CATG	1 cut(s)	329
FaiI	YATR	3 cut(s)	170, 300, 327
FatI	CATG	1 cut(s)	325
FokI	GGATG	2 cut(s)	5, 245
FriOI	GRGCYC	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	250
Hin1II	CATG	1 cut(s)	329
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HinfI	GANTC	1 cut(s)	98
HphI	GGTGA	3 cut(s)	19, 40, 353
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188III	TCNNGA	4 cut(s)	102, 151, 275, 429
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	1 cut(s)	62
Hsp92II	CATG	1 cut(s)	329
KpnI	GGTACC	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	315
LweI	GCATC	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	3 cut(s)	47, 139, 175
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	3 cut(s)	125, 252, 412
MlyI	GAGTC	1 cut(s)	107
MnlI	CCTC	2 cut(s)	33, 190
MseI	TTAA	3 cut(s)	128, 255, 416
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	2 cut(s)	6, 43
NmuCI	GTSAC	1 cut(s)	341
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PpuMI	RGGWCCY	1 cut(s)	5
PshBI	ATTAAT	1 cut(s)	255
Psp124BI	GAGCTC	1 cut(s)	320
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	6, 43
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
RsaI	GTAC	2 cut(s)	37, 43
RsaNI	GTAC	2 cut(s)	36, 42
SacI	GAGCTC	1 cut(s)	320
SaqAI	TTAA	3 cut(s)	128, 255, 416
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	1 cut(s)	5
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	3 cut(s)	320, 350, 360
SfaNI	GCATC	1 cut(s)	292
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	3 cut(s)	125, 252, 412
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	228
TasI	AATT	3 cut(s)	125, 252, 412
Tru1I	TTAA	3 cut(s)	128, 255, 416
Tru9I	TTAA	3 cut(s)	128, 255, 416
TscAI	CASTG	2 cut(s)	37, 123
TseFI	GTSAC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	2 cut(s)	249, 314
TspRI	CASTG	2 cut(s)	37, 123
VpaK11BI	GGWCC	1 cut(s)	5
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.