Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Forward (+)

20600521 .. 20601142

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTTACCATTGTTACAACCAGTAACGTCGTATCTTTCTATCATCTTCACGTGAGCAGGTTCCTCGATGATAAAGAAGACATTGCAAAATTGCGGAAATGCTTTGCAGGATTGTGGAGTTTGGATGACTCAGATATTGTCAAAAAGGCAATAGAGAGCCCTGGGTTATTTGTTATGAAGCCCCAAAGAGAAGGCGGAGGGAACAACATCTACGGCACTGATGTAAGGGAAGCCCTCACAAGATTGCAGAAGGAAGGATCAGAAGCAGATGCTGCTTATATCCTAATGCAGAGGATATTCCCTACTGCTTCTCACACATTCTTGATGCGCGAGGGTGTATGTTATAAAGATGATACCATATCTGAGCTGGGGGTATACGGTGCTTACTTAAGGTATACGACTTTTATGACTAAATCTTCAGGTTTCTGTTGTTTCCTTTTTTTCCTTCTCTTTATTTGCACAGGTACAATCCACTTCTGTCGGCATTGTTTATACCGTGCAAATAACAGCTGTACCAAAGCGTGGACTCAGTGCCACATTTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

183

Amino Acids

20.78

Weight (kDa)

8.06

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
Acc36I	ACCTGC	1 cut(s)	48
AccB7I	CCANNNNNTGG	1 cut(s)	522
AccI	GTMKAC	2 cut(s)	375, 395
AccII	CGCG	1 cut(s)	330
AciI	CCGC	2 cut(s)	94, 195
AclWI	GGATC	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	402
AcvI	CACGTG	1 cut(s)	52
AfaI	GTAC	2 cut(s)	466, 514
AfiI	CCNNNNNNNGG	1 cut(s)	522
AflII	CTTAAG	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	2 cut(s)	367, 510
AluI	AGCT	2 cut(s)	367, 510
AlwI	GGATC	1 cut(s)	265
AlwNI	CAGNNNCTG	1 cut(s)	272
ApeKI	GCWGC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	330
BaeI	ACNNNNGTAYC	2 cut(s)	496, 529
BanII	GRGCYC	1 cut(s)	161
BbrPI	CACGTG	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	259
BceAI	ACGGC	1 cut(s)	229
BcgI	CGANNNNNNTGC	2 cut(s)	46, 80
BciT130I	CCWGG	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	388
BfuAI	ACCTGC	1 cut(s)	48
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	259, 315
BpiI	GAAGAC	1 cut(s)	84
BsaAI	YACGTR	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	160, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	522
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	160, 161
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	522
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	3 cut(s)	144, 354, 542
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	259
BseYI	CCCAGC	1 cut(s)	367
Bsh1236I	CGCG	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	522
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	257
BspACI	CCGC	2 cut(s)	94, 195
BspCNI	CTCAG	3 cut(s)	143, 355, 541
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	62
BspMI	ACCTGC	1 cut(s)	48
BspPI	GGATC	1 cut(s)	265
BspTI	CTTAAG	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	21
BssECI	CCNNGG	2 cut(s)	160, 161
BssMI	GATC	1 cut(s)	257
BssNAI	GTATAC	2 cut(s)	376, 396
Bst1107I	GTATAC	2 cut(s)	376, 396
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	380, 497
BstAFI	CTTAAG	1 cut(s)	388
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstBAI	YACGTR	1 cut(s)	52
BstDEI	CTNAG	3 cut(s)	130, 363, 528
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	1 cut(s)	130
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	1 cut(s)	260
BstMBI	GATC	1 cut(s)	257
BstMWI	GCNNNNNNNGC	1 cut(s)	272
BstNI	CCWGG	1 cut(s)	162
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	1 cut(s)	160
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	84
BstZ17I	GTATAC	2 cut(s)	376, 396
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	2 cut(s)	216, 536
BveI	ACCTGC	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	465, 513
CviJI	RGCY	5 cut(s)	159, 181, 233, 367, 510
CviKI_1	RGCY	5 cut(s)	159, 181, 233, 367, 510
CviQI	GTAC	2 cut(s)	465, 513
DdeI	CTNAG	3 cut(s)	130, 363, 528
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
EciI	GGCGGA	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	402
Eco72I	CACGTG	1 cut(s)	52
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	161
FaiI	YATR	9 cut(s)	176, 279, 340, 345, 359, 376, 396, 407, 493
FblI	GTMKAC	2 cut(s)	375, 395
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	273
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	1 cut(s)	273
GsaI	CCCAGC	1 cut(s)	371
HhaI	GCGC	1 cut(s)	330
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	128, 526
Hpy166II	GTNNAC	3 cut(s)	376, 396, 525
Hpy188I	TCNGA	3 cut(s)	133, 262, 364
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	3 cut(s)	376, 396, 525
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	4 cut(s)	185, 244, 248, 455
HpyCH4III	ACNGT	2 cut(s)	380, 497
HpyCH4IV	ACGT	2 cut(s)	27, 51
HpyCH4V	TGCA	6 cut(s)	86, 107, 247, 289, 459, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	272
HpyF3I	CTNAG	3 cut(s)	130, 363, 528
HpySE526I	ACGT	2 cut(s)	27, 51
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	257
LpnPI	CCDG	8 cut(s)	34, 43, 93, 147, 174, 353, 405, 447
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	2 cut(s)	259, 315
MaeII	ACGT	2 cut(s)	27, 51
MaeIII	GTNAC	3 cut(s)	4, 13, 23
MalI	GATC	1 cut(s)	259
MboI	GATC	1 cut(s)	257
MboII	GAAGA	3 cut(s)	38, 89, 408
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	1 cut(s)	89
MlyI	GAGTC	2 cut(s)	122, 520
MnlI	CCTC	5 cut(s)	74, 191, 245, 285, 325
MseI	TTAA	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	510
MspCI	CTTAAG	1 cut(s)	388
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	1 cut(s)	272
NdeII	GATC	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	62
PasI	CCCWGGG	1 cut(s)	161
PflMI	CCANNNNNTGG	1 cut(s)	522
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	2 cut(s)	122, 520
PmaCI	CACGTG	1 cut(s)	52
PmlI	CACGTG	1 cut(s)	52
PpsI	GAGTC	2 cut(s)	122, 520
Ppu21I	YACGTR	1 cut(s)	52
PsiI	TTATAA	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	160
PspCI	CACGTG	1 cut(s)	52
PspEI	GGTNACC	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	62
PsrI	GAACNNNNNNTAC	2 cut(s)	194, 226
PstNI	CAGNNNCTG	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	510
RsaI	GTAC	2 cut(s)	466, 514
RsaNI	GTAC	2 cut(s)	465, 513
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	1 cut(s)	257
SchI	GAGTC	2 cut(s)	122, 520
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	8 cut(s)	30, 54, 62, 369, 395, 424, 466, 512
SfaNI	GCATC	2 cut(s)	259, 315
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
Sse9I	AATT	1 cut(s)	89
SsiI	CCGC	2 cut(s)	94, 195
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	380, 497
TaiI	ACGT	2 cut(s)	30, 54
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	2 cut(s)	223, 536
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	191, 533
TspRI	CASTG	2 cut(s)	223, 536
Van91I	CCANNNNNTGG	1 cut(s)	522
Vha464I	CTTAAG	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XmiI	GTMKAC	2 cut(s)	375, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.