Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

62452393 .. 62462482

Gene Structure 10090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG435100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATACACGCCCCGTTCGCTTTACTTCTGATGCCCTTTCCAGAAACTCAGTTGAATCAAGCAAATGAGTTAGCCCCCATATTCAATGAACTTGTTGATAGAGGTCAGAGGATTGGAGAGTTATCATTGGGCCGGAATCGGGATGGAGGAGATGAGGTTGTGGTCCCGGGGCTGGACCCGGATCGGCCTGACCCGATTTGGGTAAGGTCGCGTGATTACGATCTGATGTTTGGAAGGTTTGGTGCCTCTCCACGGCGCGATGGGGAAGGTGGAAGGTTGATCATGGCGGTGAGGTGGAGCAGAGGGCGGTCTGTTGGTGGTGGCAGTAATGGGGTTGGGCCAAGCTTTGGTGGTGGCTTGTGGTCTTATGGTCTATACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

127

Amino Acids

13.87

Weight (kDa)

5.78

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccII	CGCG	2 cut(s)	211, 258
AciI	CCGC	2 cut(s)	287, 307
AclWI	GGATC	1 cut(s)	189
AfiI	CCNNNNNNNGG	5 cut(s)	139, 172, 199, 252, 347
AgsI	TTSAA	2 cut(s)	55, 85
AluBI	AGCT	1 cut(s)	345
AluI	AGCT	1 cut(s)	345
AlwI	GGATC	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	3 cut(s)	130, 185, 338
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	4 cut(s)	130, 163, 175, 338
AsuC2I	CCSGG	3 cut(s)	167, 168, 179
AsuHPI	GGTGA	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	166
AvaII	GGWCC	2 cut(s)	163, 175
BanI	GGYRCC	1 cut(s)	242
BccI	CCATC	2 cut(s)	137, 254
BceAI	ACGGC	1 cut(s)	269
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	3 cut(s)	167, 168, 179
Bme1390I	CCNGG	3 cut(s)	167, 168, 179
Bme18I	GGWCC	2 cut(s)	163, 175
BmeT110I	CYCGRG	1 cut(s)	166
BmgT120I	GGNCC	4 cut(s)	130, 163, 175, 338
BmiI	GGNNCC	3 cut(s)	165, 177, 244
BmrFI	CCNGG	3 cut(s)	167, 168, 179
BmsI	GCATC	1 cut(s)	21
BpuMI	CCSGG	3 cut(s)	167, 168, 179
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	166, 167, 251
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	5 cut(s)	139, 172, 199, 252, 347
Bse8I	GATNNNNATC	1 cut(s)	219
BseDI	CCNNGG	3 cut(s)	166, 167, 251
BseGI	GGATG	1 cut(s)	148
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	5 cut(s)	139, 172, 199, 252, 347
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	162
Bsh1236I	CGCG	2 cut(s)	211, 258
BshFI	GGCC	3 cut(s)	132, 187, 340
BshNI	GGYRCC	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	133, 167, 179
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	5 cut(s)	139, 172, 199, 252, 347
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	132, 187, 340
BsoBI	CYCGRG	1 cut(s)	166
Bsp143I	GATC	3 cut(s)	181, 220, 279
BspACI	CCGC	2 cut(s)	287, 307
BspANI	GGCC	3 cut(s)	132, 187, 340
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	2 cut(s)	211, 258
BspLI	GGNNCC	3 cut(s)	165, 177, 244
BspPI	GGATC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	242
BssECI	CCNNGG	3 cut(s)	166, 167, 251
BssMI	GATC	3 cut(s)	181, 220, 279
Bst4CI	ACNGT	1 cut(s)	380
BstDEI	CTNAG	1 cut(s)	48
BstDSI	CCRYGG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	2 cut(s)	211, 258
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	3 cut(s)	184, 223, 282
BstMBI	GATC	3 cut(s)	181, 220, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstSCI	CCNGG	3 cut(s)	165, 166, 177
BstUI	CGCG	2 cut(s)	211, 258
BsuRI	GGCC	3 cut(s)	132, 187, 340
BtgI	CCRYGG	1 cut(s)	251
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	148
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	4 cut(s)	130, 163, 175, 338
Cfr9I	CCCGGG	1 cut(s)	166
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	7 cut(s)	74, 132, 172, 187, 340, 345, 357
CviKI_1	RGCY	7 cut(s)	74, 132, 172, 187, 340, 345, 357
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	3 cut(s)	183, 222, 281
DpnII	GATC	3 cut(s)	181, 220, 279
Eco47I	GGWCC	2 cut(s)	163, 175
Eco88I	CYCGRG	1 cut(s)	166
FaeI	CATG	1 cut(s)	286
FaiI	YATR	4 cut(s)	80, 284, 369, 376
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	282
FbaI	TGATCA	1 cut(s)	279
FokI	GGATG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	132, 187, 340
HapII	CCGG	3 cut(s)	133, 167, 179
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	343
HinfI	GANTC	2 cut(s)	55, 136
HpaII	CCGG	3 cut(s)	133, 167, 179
HphI	GGTGA	1 cut(s)	301
Hpy188I	TCNGA	3 cut(s)	30, 108, 225
Hpy188III	TCNNGA	2 cut(s)	41, 140
HpyAV	CCTTC	3 cut(s)	228, 260, 267
HpyCH4III	ACNGT	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	181, 220, 279
LmnI	GCTCC	1 cut(s)	297
LpnPI	CCDG	6 cut(s)	54, 146, 158, 180, 192, 201
LweI	GCATC	1 cut(s)	21
MalI	GATC	3 cut(s)	183, 222, 281
MboI	GATC	3 cut(s)	181, 220, 279
MnlI	CCTC	7 cut(s)	95, 102, 140, 148, 256, 285, 296
MslI	CAYNNNNRTG	1 cut(s)	287
MspI	CCGG	3 cut(s)	133, 167, 179
MspR9I	CCNGG	3 cut(s)	167, 168, 179
MvnI	CGCG	2 cut(s)	211, 258
MwoI	GCNNNNNNNGC	1 cut(s)	17
NciI	CCSGG	3 cut(s)	167, 168, 179
NdeII	GATC	3 cut(s)	181, 220, 279
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	3 cut(s)	165, 177, 244
PfeI	GAWTC	2 cut(s)	55, 136
PflMI	CCANNNNNTGG	1 cut(s)	347
PspN4I	GGNNCC	3 cut(s)	165, 177, 244
PspPI	GGNCC	4 cut(s)	130, 163, 175, 338
RseI	CAYNNNNRTG	1 cut(s)	287
Sau3AI	GATC	3 cut(s)	181, 220, 279
Sau96I	GGNCC	4 cut(s)	130, 163, 175, 338
ScrFI	CCNGG	3 cut(s)	167, 168, 179
SetI	ASST	8 cut(s)	106, 159, 209, 239, 271, 278, 296, 347
SfaNI	GCATC	1 cut(s)	21
SinI	GGWCC	2 cut(s)	163, 175
SmaI	CCCGGG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	287
SsiI	CCGC	2 cut(s)	287, 307
StyD4I	CCNGG	3 cut(s)	165, 166, 177
TaaI	ACNGT	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	55, 136
TspDTI	ATGAA	1 cut(s)	102
TspMI	CCCGGG	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	347
VpaK11BI	GGWCC	2 cut(s)	163, 175
XmaI	CCCGGG	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.