Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

57406110 .. 57406976

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00039730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAGTGCTTTACATTCCATCCCTCTCACCACTGGTACTGGTACCGGTACCATCACCCTTCTTTACTCAAATCCCAGAATATCCTTGTTTTCTCAGTCAACAGAGTCAAGATTACAAAACCCAGTGTTCAAATTAAACCCCACCAACCAAATCTTCAAGACCCAGTTGAAGACCATATCTCAATCCTCTCAAGTTCTGCCTGTCAATGGTGGCGAAGTTGTATTTAGGGAGAGCCAGGATGAAAGTAGCAGAAGGCTAATTAATGTTGATGGGGTTGATCTGGAAGTCGTTGAAAAGATGGTGTATGATGCTCTTATTTGGAGCTTATTTCATGGGCTTGTTGTTGGTGACAGGTCTGCGTTCAGTGATGGAAACCATGAAGTCCAATTGTACAGAAGTCGAACAACAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

137

Amino Acids

15.21

Weight (kDa)

6.27

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	41, 47
AccB1I	GGYRCC	2 cut(s)	41, 47
AfaI	GTAC	4 cut(s)	37, 43, 49, 392
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgeI	ACCGGT	1 cut(s)	44
AgsI	TTSAA	4 cut(s)	130, 157, 169, 293
AjnI	CCWGG	1 cut(s)	234
AjuI	GAANNNNNNNTTGG	2 cut(s)	137, 169
AluBI	AGCT	1 cut(s)	324
AluI	AGCT	1 cut(s)	324
AseI	ATTAAT	1 cut(s)	261
AsiGI	ACCGGT	1 cut(s)	44
Asp718I	GGTACC	2 cut(s)	41, 47
AsuHPI	GGTGA	3 cut(s)	19, 46, 359
BanI	GGYRCC	2 cut(s)	41, 47
BbsI	GAAGAC	1 cut(s)	176
BccI	CCATC	5 cut(s)	26, 59, 263, 292, 362
BciT130I	CCWGG	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	43, 49
BmrFI	CCNGG	1 cut(s)	236
BmrI	ACTGGG	2 cut(s)	116, 157
BmsI	GCATC	1 cut(s)	298
BmuI	ACTGGG	2 cut(s)	116, 157
BpiI	GAAGAC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	4 cut(s)	37, 43, 122, 163
BseBI	CCWGG	1 cut(s)	236
BseGI	GGATG	2 cut(s)	18, 244
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	4 cut(s)	37, 43, 122, 163
BshNI	GGYRCC	2 cut(s)	41, 47
BshTI	ACCGGT	1 cut(s)	44
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	206
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	43, 49
BspT107I	GGYRCC	2 cut(s)	41, 47
BsrFI	RCCGGY	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	4 cut(s)	37, 43, 122, 163
BssAI	RCCGGY	1 cut(s)	44
BssMI	GATC	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	409
BstAUI	TGTACA	1 cut(s)	390
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	18, 244
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	176
BtsCI	GGATG	2 cut(s)	18, 244
BtsIMutI	CAGTG	3 cut(s)	30, 129, 370
Cfr10I	RCCGGY	1 cut(s)	44
Csp6I	GTAC	4 cut(s)	36, 42, 48, 391
CspAI	ACCGGT	1 cut(s)	44
CviAII	CATG	2 cut(s)	332, 377
CviJI	RGCY	4 cut(s)	234, 256, 324, 337
CviKI_1	RGCY	4 cut(s)	234, 256, 324, 337
CviQI	GTAC	4 cut(s)	36, 42, 48, 391
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	234
FaeI	CATG	2 cut(s)	335, 380
FaiI	YATR	5 cut(s)	176, 306, 333, 378, 412
FatI	CATG	2 cut(s)	331, 376
FokI	GGATG	2 cut(s)	5, 251
HapII	CCGG	1 cut(s)	45
Hin1II	CATG	2 cut(s)	335, 380
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	3 cut(s)	19, 46, 359
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188III	TCNNGA	3 cut(s)	108, 157, 281
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	68, 246
HpyCH4III	ACNGT	1 cut(s)	409
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	335, 380
KpnI	GGTACC	2 cut(s)	45, 51
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	321
LweI	GCATC	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	2 cut(s)	145, 181
MfeI	CAATTG	1 cut(s)	386
MluCI	AATT	3 cut(s)	131, 258, 386
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	2 cut(s)	33, 196
MseI	TTAA	2 cut(s)	134, 261
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	236
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	2 cut(s)	335, 380
NlaIV	GGNNCC	2 cut(s)	43, 49
NmuCI	GTSAC	1 cut(s)	347
PinAI	ACCGGT	1 cut(s)	44
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	43, 49
RsaI	GTAC	4 cut(s)	37, 43, 49, 392
RsaNI	GTAC	4 cut(s)	36, 42, 48, 391
SaqAI	TTAA	2 cut(s)	134, 261
Sau3AI	GATC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	2 cut(s)	326, 356
SfaNI	GCATC	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	3 cut(s)	131, 258, 386
StyD4I	CCNGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	400
TasI	AATT	3 cut(s)	131, 258, 386
TatI	WGTACW	1 cut(s)	390
Tru1I	TTAA	2 cut(s)	134, 261
Tru9I	TTAA	2 cut(s)	134, 261
TscAI	CASTG	3 cut(s)	37, 129, 370
TseFI	GTSAC	1 cut(s)	347
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	3 cut(s)	255, 320, 393
TspRI	CASTG	3 cut(s)	37, 129, 370
VspI	ATTAAT	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.