Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

87084896 .. 87085534

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG654200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTATGACCAACATTGGCTCTCTACTTCATTGAAGGAAAAATATAACATATCAACTCTTCGAAAAACTTTGGCTGAAATTGACGCCGAGGCGGAGTTTCTACCAGATGGAACATTTGTTGTTCGCGGCCAAGTAATTGGAATAGTTTATTTCAGAGCTGGGTATACCCCAAATGATTATCCTTATGAATCAGAGTGGAAAGCTAGGTTACTTGTGGAGCAATCACCCGCCATCAAGTGTCCATCAATATCTTATCATCTAGCTGGAACAAAAAAAGTTCAACAAGAACTTGCTAAGCCTAATGTTCTCGAGAGGTTCCTTGATGATAAAGAAGACATTGCAAAATTGCGGAAATGCTTTGTAGGATTGTGGAGTTTGGACGACTCAGAAATTGTTAGAAAAGCAAAGGAAAAGCTAGAGTTATTTGTCATGAAGCCCCAAAGAGAAGGCGGAGGGAACATTATCTATGGCAATGATGTGAGGGAAACCCTCCTTAAATTGCAGAAGAAAGGGTCAGAAGCTGACGCTGCTTATATCTTGATGCAGAGGTCATTCCGTCTTGTTTCTTGCACATTCTTGATGCAAGAGGGAATTTGTTATAAAGAAAATCTAAGCTTGGAGTATATGGTGTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

212

Amino Acids

24.38

Weight (kDa)

6.76

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSH_synthase	PF03199	1 - 88	3.8e-26	Eukaryotic glutathione synthase
GSH_synth_ATP	PF03917	37 - 203	1.4e-35	Eukaryotic glutathione synthase, ATP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AccI	GTMKAC	2 cut(s)	164, 632
AccII	CGCG	1 cut(s)	126
AciI	CCGC	5 cut(s)	92, 126, 228, 349, 450
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	591
AcyI	GRCGYC	1 cut(s)	84
AgsI	TTSAA	2 cut(s)	34, 281
AluBI	AGCT	6 cut(s)	158, 203, 263, 415, 521, 615
AluI	AGCT	6 cut(s)	158, 203, 263, 415, 521, 615
AlwNI	CAGNNNCTG	1 cut(s)	521
Ama87I	CYCGRG	1 cut(s)	308
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	1 cut(s)	591
AsuHPI	GGTGA	1 cut(s)	216
AsuII	TTCGAA	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	339
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	3 cut(s)	101, 239, 250
BfaI	CTAG	3 cut(s)	204, 260, 416
BisI	GCNGC	2 cut(s)	127, 528
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	2 cut(s)	128, 529
BmeT110I	CYCGRG	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	317
BmsI	GCATC	2 cut(s)	531, 570
BpiI	GAAGAC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	87
Bse3DI	GCAATG	2 cut(s)	336, 478
BseDI	CCNNGG	1 cut(s)	87
BseMI	GCAATG	2 cut(s)	336, 478
BseMII	CTCAG	1 cut(s)	399
BseXI	GCAGC	1 cut(s)	514
BseYI	CCCAGC	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	308
BsnI	GGCC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	308
Bsp119I	TTCGAA	1 cut(s)	61
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	5 cut(s)	92, 126, 228, 349, 450
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	398
BspFNI	CGCG	1 cut(s)	126
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	317
BspT104I	TTCGAA	1 cut(s)	61
BsrDI	GCAATG	2 cut(s)	336, 478
BssECI	CCNNGG	1 cut(s)	87
BssNAI	GTATAC	1 cut(s)	165
BssNI	GRCGYC	1 cut(s)	84
Bst1107I	GTATAC	1 cut(s)	165
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	61
BstDEI	CTNAG	3 cut(s)	294, 385, 611
BstFNI	CGCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	527
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	1 cut(s)	339
BstXI	CCANNNNNNTGG	1 cut(s)	137
BstZ17I	GTATAC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	521
CciI	TCATGA	1 cut(s)	429
CseI	GACGC	2 cut(s)	92, 533
CviAII	CATG	1 cut(s)	430
DdeI	CTNAG	3 cut(s)	294, 385, 611
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
EciI	GGCGGA	2 cut(s)	107, 465
Eco88I	CYCGRG	1 cut(s)	308
FaeI	CATG	1 cut(s)	433
FatI	CATG	1 cut(s)	429
FauI	CCCGC	1 cut(s)	235
FblI	GTMKAC	2 cut(s)	164, 632
Fnu4HI	GCNGC	2 cut(s)	127, 528
Fsp4HI	GCNGC	2 cut(s)	127, 528
FspBI	CTAG	3 cut(s)	204, 260, 416
GluI	GCNGC	2 cut(s)	127, 528
GsaI	CCCAGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	129
HgaI	GACGC	2 cut(s)	92, 533
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	613
HinfI	GANTC	2 cut(s)	188, 383
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	2 cut(s)	165, 633
Hpy188I	TCNGA	4 cut(s)	155, 193, 388, 517
Hpy188III	TCNNGA	5 cut(s)	308, 310, 430, 538, 577
Hpy8I	GTNNAC	2 cut(s)	165, 633
HpyAV	CCTTC	2 cut(s)	28, 440
HpyCH4V	TGCA	5 cut(s)	341, 502, 544, 570, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	527
HpyF3I	CTNAG	3 cut(s)	294, 385, 611
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	433
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	3 cut(s)	117, 144, 249
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	2 cut(s)	531, 570
MaeI	CTAG	3 cut(s)	204, 260, 416
MaeIII	GTNAC	1 cut(s)	207
MboII	GAAGA	3 cut(s)	50, 344, 517
MluCI	AATT	6 cut(s)	78, 135, 344, 390, 497, 591
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	7 cut(s)	82, 306, 446, 474, 500, 540, 580
MseI	TTAA	1 cut(s)	495
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	527
NlaIII	CATG	1 cut(s)	433
NlaIV	GGNNCC	1 cut(s)	317
NmeAIII	GCCGAG	1 cut(s)	112
NspV	TTCGAA	1 cut(s)	61
PaeR7I	CTCGAG	1 cut(s)	308
PagI	TCATGA	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	128, 529
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PsiI	TTATAA	1 cut(s)	600
PspFI	CCCAGC	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	317
PstNI	CAGNNNCTG	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	2 cut(s)	127, 528
SchI	GAGTC	1 cut(s)	377
SetI	ASST	9 cut(s)	160, 205, 209, 265, 317, 417, 523, 551, 617
SfaNI	GCATC	2 cut(s)	531, 570
Sfr274I	CTCGAG	1 cut(s)	308
SfuI	TTCGAA	1 cut(s)	61
SlaI	CTCGAG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	6 cut(s)	78, 135, 344, 390, 497, 591
SsiI	CCGC	5 cut(s)	92, 126, 228, 349, 450
SspMI	CTAG	3 cut(s)	204, 260, 416
TaqI	TCGA	2 cut(s)	61, 309
TasI	AATT	6 cut(s)	78, 135, 344, 390, 497, 591
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TseI	GCWGC	1 cut(s)	527
TspDTI	ATGAA	3 cut(s)	18, 201, 446
TspGWI	ACGGA	1 cut(s)	545
XapI	RAATTY	1 cut(s)	591
XhoI	CTCGAG	1 cut(s)	308
XmiI	GTMKAC	2 cut(s)	164, 632
XspI	CTAG	3 cut(s)	204, 260, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.