Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

89198487 .. 89199862

Gene Structure 1376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG667800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGAAAAATGCATGGGTGCTTCACTTTCCATTCCTCTCACCGCTGATACCATCACCCTTTTCCACTCAAATCCCAGTACTACCTTATTTTCTCAATCAAGATTACAGAACCCAGTACGTGTTCAAATTAAACCCCACTGACCAAATCTTCAAGACCCAGTTCAAGACCATGTCTCAACCCTCTCAAGTTTTGCGTGCCAATGGTGGCAAAGTTGTAGCTAGGGAGACCCAGGATGAAAGTAGCACAAGGCCAATTAATGTTGATGGGATTGATCAGGGACTGGTTGACAAGATGGTGTATGATGCTCTTATTTGGAGCTCAAATCATGGCCTTGTTGTTGGTGACAGGTCTGTTCAGAGGTCATCAACAATACCTGGAGTAGGAATGGGCTCAGTGGTCTTGTCTGCCAACTTCACAGGAGCTTACTTGGTAACTATGGAGAATTTCTTGGATTGGATCCTAAAAGGATTCCTAATTAATAATGTTGCAATCAGTCAGTTTTCAGCGGCTTTGGCCAGAACTTGGACTAAATACAACAACCCTAGGGCCGCAGTTCTATTTGTAGTTCAGGCTGAAGAACGCAACATGTATGACCAACATTGGCTCTCTACTTCATTGAAGCAAAAATATAACATATCAACTCTTCGAAAAACTTTAGCTGAAATTGACGCTGAGGCGGAGTTTCTACCAGATGGAACATTTGTTGTTGGCGGCCAAGTAATTGGAATAGTTTATTTCAGAGCTGGGTATACCCCAACTGATTATCCTTCTGAATCAAAGTGGAGAGCTAGGTTACTTATGGAGCAATCATCCGCCATCAAGTGTCCATCAATATCTTATCATGTAGCTGGAACAAAAAAAATTCGACAAGAACTTGCTAAGCCTAATGTTCTCGAGAGGTTCCTTGATGATAAAGAAGACATTGCAAAATTGCGGAAATGCTTTGTAGGATTGTGGAGTTTGGATGACTCAGAAATTGTTAGAAAAAGCAATGGAAAAGCCAGAGTTATTTGTCATGAAGCCCCAAAGAGAAGGCGGAGGGAACAATATCTATGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

353

Amino Acids

40.14

Weight (kDa)

9.38

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSH_synth_ATP	PF03917	157 - 333	9.8e-18	Eukaryotic glutathione synthase, ATP binding domain
GSH_synthase	PF03199	184 - 283	4.5e-33	Eukaryotic glutathione synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	522
AccI	GTMKAC	1 cut(s)	749
AciI	CCGC	8 cut(s)	41, 506, 549, 677, 711, 813, 934, 1036
AclWI	GGATC	2 cut(s)	451, 464
AcoI	YGGCCR	2 cut(s)	513, 712
AcsI	RAATTY	2 cut(s)	442, 861
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	2 cut(s)	78, 116
AfiI	CCNNNNNNNGG	2 cut(s)	380, 522
AflIII	ACRYGT	2 cut(s)	117, 585
AgsI	TTSAA	4 cut(s)	124, 151, 163, 619
AjnI	CCWGG	2 cut(s)	228, 373
AluBI	AGCT	7 cut(s)	218, 318, 422, 659, 743, 788, 848
AluI	AGCT	7 cut(s)	218, 318, 422, 659, 743, 788, 848
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	2 cut(s)	177, 218
AlwI	GGATC	2 cut(s)	451, 464
AlwNI	CAGNNNCTG	1 cut(s)	280
Ama87I	CYCGRG	1 cut(s)	893
AoxI	GGCC	5 cut(s)	248, 328, 513, 546, 712
ApoI	RAATTY	2 cut(s)	442, 861
AseI	ATTAAT	2 cut(s)	255, 477
AspA2I	CCTAGG	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	546
AsuHPI	GGTGA	3 cut(s)	30, 45, 353
AsuII	TTCGAA	1 cut(s)	646
AvaI	CYCGRG	1 cut(s)	893
AvrII	CCTAGG	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	515
BamHI	GGATCC	1 cut(s)	456
BanII	GRGCYC	2 cut(s)	320, 392
BbsI	GAAGAC	1 cut(s)	924
Bbv12I	GWGCWC	1 cut(s)	320
BbvCI	CCTCAGC	1 cut(s)	672
BccI	CCATC	6 cut(s)	58, 257, 286, 686, 824, 835
BciT130I	CCWGG	2 cut(s)	230, 375
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	177, 218
BfaI	CTAG	3 cut(s)	219, 543, 789
BisI	GCNGC	3 cut(s)	507, 549, 712
BlnI	CCTAGG	1 cut(s)	542
BlpI	GCTNAGC	1 cut(s)	879
BlsI	GCNGC	3 cut(s)	508, 550, 713
BmcAI	AGTACT	1 cut(s)	78
Bme1390I	CCNGG	2 cut(s)	230, 375
BmeT110I	CYCGRG	1 cut(s)	893
BmgT120I	GGNCC	1 cut(s)	546
BmiI	GGNNCC	2 cut(s)	458, 902
BmrFI	CCNGG	2 cut(s)	230, 375
BmrI	ACTGGG	3 cut(s)	68, 106, 151
BmsI	GCATC	1 cut(s)	292
BmuI	ACTGGG	3 cut(s)	68, 106, 151
BpiI	GAAGAC	1 cut(s)	924
BpmI	CTGGAG	1 cut(s)	396
Bpu10I	CCTNAGC	1 cut(s)	672
Bpu1102I	GCTNAGC	1 cut(s)	879
Bpu14I	TTCGAA	1 cut(s)	646
BpuEI	CTTGAG	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	118
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	228, 542
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 522
Bse1I	ACTGG	4 cut(s)	74, 112, 157, 285
Bse3DI	GCAATG	2 cut(s)	921, 997
BseBI	CCWGG	2 cut(s)	230, 375
BseDI	CCNNGG	2 cut(s)	228, 542
BseGI	GGATG	3 cut(s)	238, 809, 970
BseLI	CCNNNNNNNGG	2 cut(s)	380, 522
BseMI	GCAATG	2 cut(s)	921, 997
BseMII	CTCAG	3 cut(s)	405, 663, 984
BseNI	ACTGG	4 cut(s)	74, 112, 157, 285
BseYI	CCCAGC	1 cut(s)	743
BshFI	GGCC	5 cut(s)	250, 330, 515, 548, 714
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	893
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	380, 522
BsmAI	GTCTC	2 cut(s)	177, 218
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	5 cut(s)	250, 330, 515, 548, 714
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	893
Bsp119I	TTCGAA	1 cut(s)	646
Bsp1286I	GDGCHC	2 cut(s)	320, 392
Bsp143I	GATC	2 cut(s)	271, 456
Bsp1720I	GCTNAGC	1 cut(s)	879
BspACI	CCGC	8 cut(s)	41, 506, 549, 677, 711, 813, 934, 1036
BspANI	GGCC	5 cut(s)	250, 330, 515, 548, 714
BspCNI	CTCAG	3 cut(s)	404, 664, 983
BspHI	TCATGA	1 cut(s)	1015
BspLI	GGNNCC	2 cut(s)	458, 902
BspPI	GGATC	2 cut(s)	451, 464
BspT104I	TTCGAA	1 cut(s)	646
BspTNI	GGTCTC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	921, 997
BsrI	ACTGG	4 cut(s)	74, 112, 157, 285
BssECI	CCNNGG	2 cut(s)	228, 542
BssMI	GATC	2 cut(s)	271, 456
BssNAI	GTATAC	1 cut(s)	750
BssT1I	CCWWGG	1 cut(s)	542
Bst1107I	GTATAC	1 cut(s)	750
Bst2UI	CCWGG	2 cut(s)	230, 375
Bst6I	CTCTTC	1 cut(s)	648
BstBAI	YACGTR	1 cut(s)	118
BstBI	TTCGAA	1 cut(s)	646
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	4 cut(s)	391, 672, 879, 970
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	3 cut(s)	238, 809, 970
BstKTI	GATC	2 cut(s)	274, 459
BstMAI	GTCTC	2 cut(s)	177, 218
BstMBI	GATC	2 cut(s)	271, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	512
BstNI	CCWGG	2 cut(s)	230, 375
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	2 cut(s)	228, 373
BstV2I	GAAGAC	1 cut(s)	924
BstX2I	RGATCY	1 cut(s)	456
BstXI	CCANNNNNNTGG	1 cut(s)	722
BstYI	RGATCY	1 cut(s)	456
BstZ17I	GTATAC	1 cut(s)	750
BsuRI	GGCC	5 cut(s)	250, 330, 515, 548, 714
BtsCI	GGATG	3 cut(s)	238, 809, 970
BtsIMutI	CAGTG	2 cut(s)	135, 399
Cac8I	GCNNGC	1 cut(s)	195
CaiI	CAGNNNCTG	1 cut(s)	280
CciI	TCATGA	1 cut(s)	1015
Cfr13I	GGNCC	1 cut(s)	546
CseI	GACGC	1 cut(s)	677
Csp6I	GTAC	2 cut(s)	77, 115
CviAII	CATG	6 cut(s)	12, 169, 326, 586, 842, 1016
CviQI	GTAC	2 cut(s)	77, 115
DdeI	CTNAG	4 cut(s)	391, 672, 879, 970
DpnI	GATC	2 cut(s)	273, 458
DpnII	GATC	2 cut(s)	271, 456
EaeI	YGGCCR	2 cut(s)	513, 712
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
EciI	GGCGGA	3 cut(s)	692, 802, 1051
Ecl136II	GAGCTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	542
Eco24I	GRGCYC	2 cut(s)	320, 392
Eco31I	GGTCTC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	893
EcoICRI	GAGCTC	1 cut(s)	318
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoRII	CCWGG	2 cut(s)	228, 373
EcoT14I	CCWWGG	1 cut(s)	542
EcoT22I	ATGCAT	1 cut(s)	13
EcoT38I	GRGCYC	2 cut(s)	320, 392
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	6 cut(s)	15, 172, 329, 589, 845, 1019
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	6 cut(s)	11, 168, 325, 585, 841, 1015
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	749
Fnu4HI	GCNGC	3 cut(s)	507, 549, 712
FokI	GGATG	3 cut(s)	245, 796, 977
FriOI	GRGCYC	2 cut(s)	320, 392
Fsp4HI	GCNGC	3 cut(s)	507, 549, 712
FspBI	CTAG	3 cut(s)	219, 543, 789
GluI	GCNGC	3 cut(s)	507, 549, 712
GsaI	CCCAGC	1 cut(s)	747
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	5 cut(s)	250, 330, 515, 548, 714
HgaI	GACGC	1 cut(s)	677
Hin1II	CATG	6 cut(s)	15, 172, 329, 589, 845, 1019
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	3 cut(s)	468, 773, 968
HphI	GGTGA	3 cut(s)	30, 45, 353
Hpy166II	GTNNAC	2 cut(s)	286, 750
Hpy188I	TCNGA	4 cut(s)	357, 740, 772, 973
Hpy188III	TCNNGA	6 cut(s)	98, 151, 163, 893, 895, 1016
Hpy8I	GTNNAC	2 cut(s)	286, 750
HpyAV	CCTTC	2 cut(s)	777, 1026
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	3 cut(s)	11, 488, 926
HpyF10VI	GCNNNNNNNGC	1 cut(s)	512
HpyF3I	CTNAG	4 cut(s)	391, 672, 879, 970
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	6 cut(s)	15, 172, 329, 589, 845, 1019
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	271, 456
LmnI	GCTCC	3 cut(s)	315, 419, 802
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	3 cut(s)	219, 543, 789
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	3 cut(s)	341, 430, 792
MalI	GATC	2 cut(s)	273, 458
MboI	GATC	2 cut(s)	271, 456
MboII	GAAGA	4 cut(s)	139, 587, 635, 929
MflI	RGATCY	1 cut(s)	456
MhlI	GDGCHC	2 cut(s)	320, 392
MlsI	TGGCCA	1 cut(s)	515
MluCI	AATT	9 cut(s)	125, 252, 442, 474, 663, 720, 861, 929, 975
MluNI	TGGCCA	1 cut(s)	515
MlyI	GAGTC	1 cut(s)	962
MnlI	CCTC	6 cut(s)	44, 190, 351, 667, 891, 1032
Mox20I	TGGCCA	1 cut(s)	515
Mph1103I	ATGCAT	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	515
MseI	TTAA	3 cut(s)	128, 255, 477
Msp20I	TGGCCA	1 cut(s)	515
MspA1I	CMGCKG	2 cut(s)	43, 506
MspR9I	CCNGG	2 cut(s)	230, 375
MvaI	CCWGG	2 cut(s)	230, 375
MwoI	GCNNNNNNNGC	1 cut(s)	512
NdeII	GATC	2 cut(s)	271, 456
NlaIII	CATG	6 cut(s)	15, 172, 329, 589, 845, 1019
NlaIV	GGNNCC	2 cut(s)	458, 902
NmuCI	GTSAC	1 cut(s)	341
NsiI	ATGCAT	1 cut(s)	13
NspI	RCATGY	1 cut(s)	589
NspV	TTCGAA	1 cut(s)	646
PaeR7I	CTCGAG	1 cut(s)	893
PagI	TCATGA	1 cut(s)	1015
PciI	ACATGT	1 cut(s)	585
PfeI	GAWTC	2 cut(s)	468, 773
PflFI	GACNNNGTC	1 cut(s)	169
PflMI	CCANNNNNTGG	1 cut(s)	522
PkrI	GCNGC	3 cut(s)	508, 550, 713
PleI	GAGTC	1 cut(s)	962
PpsI	GAGTC	1 cut(s)	962
Ppu21I	YACGTR	1 cut(s)	118
PscI	ACATGT	1 cut(s)	585
PshBI	ATTAAT	2 cut(s)	255, 477
Psp124BI	GAGCTC	1 cut(s)	320
Psp6I	CCWGG	2 cut(s)	228, 373
PspFI	CCCAGC	1 cut(s)	743
PspGI	CCWGG	2 cut(s)	228, 373
PspN4I	GGNNCC	2 cut(s)	458, 902
PspPI	GGNCC	1 cut(s)	546
PstNI	CAGNNNCTG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	456
PsyI	GACNNNGTC	1 cut(s)	169
RsaI	GTAC	2 cut(s)	78, 116
RsaNI	GTAC	2 cut(s)	77, 115
SacI	GAGCTC	1 cut(s)	320
SaqAI	TTAA	3 cut(s)	128, 255, 477
SatI	GCNGC	3 cut(s)	507, 549, 712
Sau3AI	GATC	2 cut(s)	271, 456
Sau96I	GGNCC	1 cut(s)	546
ScaI	AGTACT	1 cut(s)	78
SchI	GAGTC	1 cut(s)	962
ScrFI	CCNGG	2 cut(s)	230, 375
SduI	GDGCHC	2 cut(s)	320, 392
SfaNI	GCATC	1 cut(s)	292
Sfr274I	CTCGAG	1 cut(s)	893
SfuI	TTCGAA	1 cut(s)	646
SlaI	CTCGAG	1 cut(s)	893
SmlI	CTYRAG	2 cut(s)	183, 893
SmoI	CTYRAG	2 cut(s)	183, 893
Sse9I	AATT	9 cut(s)	125, 252, 442, 474, 663, 720, 861, 929, 975
SsiI	CCGC	8 cut(s)	41, 506, 549, 677, 711, 813, 934, 1036
SspMI	CTAG	3 cut(s)	219, 543, 789
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	2 cut(s)	228, 373
StyI	CCWWGG	1 cut(s)	542
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	3 cut(s)	646, 865, 894
TasI	AATT	9 cut(s)	125, 252, 442, 474, 663, 720, 861, 929, 975
TatI	WGTACW	1 cut(s)	76
TauI	GCSGC	3 cut(s)	509, 551, 714
TfiI	GAWTC	2 cut(s)	468, 773
Tru1I	TTAA	3 cut(s)	128, 255, 477
Tru9I	TTAA	3 cut(s)	128, 255, 477
TscAI	CASTG	2 cut(s)	142, 399
TseFI	GTSAC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	4 cut(s)	17, 249, 603, 1032
TspRI	CASTG	2 cut(s)	142, 399
Tth111I	GACNNNGTC	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	522
VspI	ATTAAT	2 cut(s)	255, 477
XagI	CCTNNNNNAGG	1 cut(s)	378
XapI	RAATTY	2 cut(s)	442, 861
XceI	RCATGY	1 cut(s)	589
XhoI	CTCGAG	1 cut(s)	893
XmaJI	CCTAGG	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	749
XspI	CTAG	3 cut(s)	219, 543, 789
ZrmI	AGTACT	1 cut(s)	78
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.