Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

87091561 .. 87091749

Gene Structure 189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG654500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGTCTCAACCCTCTCAAGTTTTGCCTGCCAATGGTGGCAAATTTGTAGCTAGGGAGACCCAGGATGAAAGTAGCACAAGGCCAATTAATGTTGATGGGATTGATCAGGGACTGGTTGAAAAGATCGATGGTGAACACCATGTCTCAACCCTCTCAAATTTTGCCTGCCAAATGGTGGCAAATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

62

Amino Acids

6.67

Weight (kDa)

4.73

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	175
AcsI	RAATTY	3 cut(s)	41, 157, 181
AfiI	CCNNNNNNNGG	2 cut(s)	32, 175
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw26I	GTCTC	3 cut(s)	9, 50, 148
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	80
ApoI	RAATTY	3 cut(s)	41, 157, 181
AseI	ATTAAT	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	143
BccI	CCATC	2 cut(s)	89, 122
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	1 cut(s)	103
BcoDI	GTCTC	3 cut(s)	9, 50, 148
BfaI	CTAG	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	62
Bsa29I	ATCGAT	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 175
Bse1I	ACTGG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	62
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	2 cut(s)	32, 175
BseNI	ACTGG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	82
BshVI	ATCGAT	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	32, 175
BsmAI	GTCTC	3 cut(s)	9, 50, 148
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	82
Bso31I	GGTCTC	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	103, 123
BspANI	GGCC	1 cut(s)	82
BspDI	ATCGAT	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	103, 123
Bst2UI	CCWGG	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	27, 166
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	2 cut(s)	106, 126
BstMAI	GTCTC	3 cut(s)	9, 50, 148
BstMBI	GATC	2 cut(s)	103, 123
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
Bsu15I	ATCGAT	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	82
BsuTUI	ATCGAT	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	27, 166
CaiI	CAGNNNCTG	1 cut(s)	112
ClaI	ATCGAT	1 cut(s)	126
CviAII	CATG	1 cut(s)	140
CviJI	RGCY	2 cut(s)	50, 82
CviKI_1	RGCY	2 cut(s)	50, 82
DpnI	GATC	2 cut(s)	105, 125
DpnII	GATC	2 cut(s)	103, 123
Eco31I	GGTCTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	143
FaiI	YATR	1 cut(s)	141
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	103
FokI	GGATG	1 cut(s)	77
FspBI	CTAG	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	143
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	134
Hpy8I	GTNNAC	1 cut(s)	134
Hsp92II	CATG	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	103, 123
LpnPI	CCDG	6 cut(s)	39, 47, 74, 92, 98, 178
MaeI	CTAG	1 cut(s)	51
MalI	GATC	2 cut(s)	105, 125
MboI	GATC	2 cut(s)	103, 123
MluCI	AATT	4 cut(s)	41, 84, 157, 181
MnlI	CCTC	2 cut(s)	22, 161
MseI	TTAA	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
NdeII	GATC	2 cut(s)	103, 123
NlaIII	CATG	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	175
PshBI	ATTAAT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	103, 123
ScrFI	CCNGG	1 cut(s)	62
SetI	ASST	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	4 cut(s)	41, 84, 157, 181
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	60
TaqI	TCGA	1 cut(s)	126
TasI	AATT	4 cut(s)	41, 84, 157, 181
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TspDTI	ATGAA	1 cut(s)	81
Van91I	CCANNNNNTGG	1 cut(s)	175
VspI	ATTAAT	1 cut(s)	87
XapI	RAATTY	3 cut(s)	41, 157, 181
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.