Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Forward (+)

68912110 .. 68912720

Gene Structure 611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0564200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCCAGTCTATTGTATGCTGGACCAGACAAGAATTAAACAAATGGAGATGGCCGGTAAGAGGAGGGAAGAGGCAGAACGTTGGACCACAGAACTAACTCCCAAAATGGAGGAAAGATTGAAGGTGCAAATGGAGAAATCTCGTCGTTTCAGTGTCCATTATTCTAGCCCTGGAGTTTATGAGGTTCGATCTGACTTTTCATATGTAGTCAACATCTCCGATCATTCATGTTCATGTGTGAAATGGCAGATCAATTGTTTTCCTTGTCCTCACGGCCTTGCTGCATTACAGGCTGCTTCTGTAAATGTATATGATTATATTGATAAGTACTTTCAGGTTGATATGTTCAAGAAAAGCTACAGTTTTCCTATCTGTCCGATAACCAATGTTGATATGTCTTCTTCAGAATCTGCTTCTGAATGTATATTACCTCCCCTTTCGAAGAGGCCCCCCGGGAGGCCTAGGGTGAAGCGGTTCAAGTCGGTTGGAGAGGCTGAAAAGAAGCTGATTCGTTGTGGTCGTTGTGGCAAAATGGGCACTCATAACAAGTTGAGCTGCACTGAACCTCTCGTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

192

Amino Acids

22.07

Weight (kDa)

9.08

Isoelectric Point (pI)

69.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIM	PF04434	68 - 99	1.5e-06	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	472
AclI	AACGTT	1 cut(s)	79
AcoI	YGGCCR	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	60, 456
AgsI	TTSAA	3 cut(s)	121, 349, 478
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	3 cut(s)	357, 505, 555
AluI	AGCT	3 cut(s)	357, 505, 555
AlwNI	CAGNNNCTG	1 cut(s)	410
Ama87I	CYCGRG	1 cut(s)	452
AoxI	GGCC	4 cut(s)	51, 274, 446, 458
ApeKI	GCWGC	3 cut(s)	281, 293, 555
Asp700I	GAANNNNTTC	1 cut(s)	473
AspA2I	CCTAGG	1 cut(s)	461
AspS9I	GGNCC	3 cut(s)	22, 84, 447
AsuC2I	CCSGG	2 cut(s)	453, 454
AsuHPI	GGTGA	1 cut(s)	478
AsuII	TTCGAA	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	452
AvaII	GGWCC	2 cut(s)	22, 84
AvrII	CCTAGG	1 cut(s)	461
BaeGI	GKGCMC	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	268, 280, 542
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	171
BcnI	CCSGG	2 cut(s)	453, 454
BfaI	CTAG	2 cut(s)	165, 462
BfmI	CTRYAG	1 cut(s)	358
BisI	GCNGC	3 cut(s)	282, 294, 556
BlnI	CCTAGG	1 cut(s)	461
BlsI	GCNGC	3 cut(s)	283, 295, 557
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	3 cut(s)	171, 453, 454
Bme18I	GGWCC	2 cut(s)	22, 84
BmeT110I	CYCGRG	1 cut(s)	452
BmgT120I	GGNCC	3 cut(s)	22, 84, 447
BmiI	GGNNCC	1 cut(s)	449
BmrFI	CCNGG	3 cut(s)	171, 453, 454
BpiI	GAAGAC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	440
BpuMI	CCSGG	2 cut(s)	453, 454
BsaJI	CCNNGG	4 cut(s)	169, 451, 452, 461
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 456
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	5
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	4 cut(s)	169, 451, 452, 461
BseLI	CCNNNNNNNGG	2 cut(s)	60, 456
BseNI	ACTGG	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	539
BseXI	GCAGC	3 cut(s)	268, 280, 542
BsgI	GTGCAG	1 cut(s)	541
BshFI	GGCC	4 cut(s)	53, 276, 448, 460
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	54, 453
BslI	CCNNNNNNNGG	2 cut(s)	60, 456
BsnI	GGCC	4 cut(s)	53, 276, 448, 460
BsoBI	CYCGRG	1 cut(s)	452
Bsp119I	TTCGAA	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	3 cut(s)	188, 220, 249
BspACI	CCGC	1 cut(s)	472
BspANI	GGCC	4 cut(s)	53, 276, 448, 460
BspLI	GGNNCC	1 cut(s)	449
BspT104I	TTCGAA	1 cut(s)	440
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	5
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	4 cut(s)	169, 451, 452, 461
BssMI	GATC	3 cut(s)	188, 220, 249
BssT1I	CCWWGG	1 cut(s)	461
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	2 cut(s)	63, 437
BstBI	TTCGAA	1 cut(s)	440
BstKTI	GATC	3 cut(s)	191, 223, 252
BstMBI	GATC	3 cut(s)	188, 220, 249
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 534
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	3 cut(s)	169, 451, 452
BstSFI	CTRYAG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	539
BstV1I	GCAGC	3 cut(s)	268, 280, 542
BstV2I	GAAGAC	1 cut(s)	390
BsuRI	GGCC	4 cut(s)	53, 276, 448, 460
BtsIMutI	CAGTG	2 cut(s)	157, 558
CaiI	CAGNNNCTG	1 cut(s)	410
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	22, 84, 447
Cfr9I	CCCGGG	1 cut(s)	452
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	2 cut(s)	228, 234
CviQI	GTAC	1 cut(s)	328
DpnI	GATC	3 cut(s)	190, 222, 251
DpnII	GATC	3 cut(s)	188, 220, 249
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	63, 437
EarI	CTCTTC	2 cut(s)	63, 437
Eco130I	CCWWGG	1 cut(s)	461
Eco147I	AGGCCT	1 cut(s)	460
Eco47I	GGWCC	2 cut(s)	22, 84
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	452
EcoO109I	RGGNCCY	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	461
ErhI	CCWWGG	1 cut(s)	461
FaeI	CATG	2 cut(s)	231, 237
FatI	CATG	2 cut(s)	227, 233
FauNDI	CATATG	1 cut(s)	202
Fnu4HI	GCNGC	3 cut(s)	282, 294, 556
Fsp4HI	GCNGC	3 cut(s)	282, 294, 556
FspBI	CTAG	2 cut(s)	165, 462
GluI	GCNGC	3 cut(s)	282, 294, 556
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	4 cut(s)	53, 276, 448, 460
HapII	CCGG	2 cut(s)	54, 453
Hin1II	CATG	2 cut(s)	231, 237
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	407, 508
HpaII	CCGG	2 cut(s)	54, 453
HphI	GGTGA	1 cut(s)	478
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	5 cut(s)	193, 220, 378, 406, 418
Hpy188III	TCNNGA	1 cut(s)	349
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	1 cut(s)	147
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	3 cut(s)	127, 284, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 534
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	2 cut(s)	231, 237
Kzo9I	GATC	3 cut(s)	188, 220, 249
LpnPI	CCDG	9 cut(s)	5, 18, 38, 67, 156, 183, 275, 320, 466
Lsp1109I	GCAGC	3 cut(s)	268, 280, 542
MaeI	CTAG	2 cut(s)	165, 462
MaeII	ACGT	1 cut(s)	79
MalI	GATC	3 cut(s)	190, 222, 251
MboI	GATC	3 cut(s)	188, 220, 249
MboII	GAAGA	4 cut(s)	80, 390, 393, 454
MfeI	CAATTG	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	2 cut(s)	33, 253
MmeI	TCCRAC	2 cut(s)	62, 466
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	232
MspI	CCGG	2 cut(s)	54, 453
MspR9I	CCNGG	3 cut(s)	171, 453, 454
MunI	CAATTG	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	290, 534
NciI	CCSGG	2 cut(s)	453, 454
NdeI	CATATG	1 cut(s)	202
NdeII	GATC	3 cut(s)	188, 220, 249
NlaIII	CATG	2 cut(s)	231, 237
NlaIV	GGNNCC	1 cut(s)	449
NspV	TTCGAA	1 cut(s)	440
PceI	AGGCCT	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	407, 508
PkrI	GCNGC	3 cut(s)	283, 295, 557
Psp1406I	AACGTT	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	449
PspPI	GGNCC	3 cut(s)	22, 84, 447
PstNI	CAGNNNCTG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	3 cut(s)	282, 294, 556
Sau3AI	GATC	3 cut(s)	188, 220, 249
Sau96I	GGNCC	3 cut(s)	22, 84, 447
ScaI	AGTACT	1 cut(s)	329
ScrFI	CCNGG	3 cut(s)	171, 453, 454
SduI	GDGCHC	1 cut(s)	539
SetI	ASST	9 cut(s)	82, 126, 186, 339, 359, 433, 507, 557, 568
SfcI	CTRYAG	1 cut(s)	358
SfuI	TTCGAA	1 cut(s)	440
SinI	GGWCC	2 cut(s)	22, 84
SmaI	CCCGGG	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	232
Sse9I	AATT	2 cut(s)	33, 253
SseBI	AGGCCT	1 cut(s)	460
SsiI	CCGC	1 cut(s)	472
SspMI	CTAG	2 cut(s)	165, 462
StuI	AGGCCT	1 cut(s)	460
StyD4I	CCNGG	3 cut(s)	169, 451, 452
StyI	CCWWGG	1 cut(s)	461
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	2 cut(s)	187, 440
TasI	AATT	2 cut(s)	33, 253
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	2 cut(s)	407, 508
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	2 cut(s)	157, 565
TseI	GCWGC	3 cut(s)	281, 293, 555
TspDTI	ATGAA	3 cut(s)	189, 216, 222
TspMI	CCCGGG	1 cut(s)	452
TspRI	CASTG	2 cut(s)	157, 565
VpaK11BI	GGWCC	2 cut(s)	22, 84
XmaI	CCCGGG	1 cut(s)	452
XmaJI	CCTAGG	1 cut(s)	461
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	2 cut(s)	165, 462
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.