Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

81312850 .. 81313782

Gene Structure 933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022145

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCCGTTTCCAGAAAGTCAGTTGAATCAAGCAAATGAGTTGGCTCCCATATTTAATGAACTTGTTGATCGAGTGAGTTTGGATACGAGATTCCTGCAGGATTCACTGTCCAGAACGAAGAAAGCAGATCCTTTTACATCTAGACTTCTACATATTCATGCCAAGATGCTAGAGAATAACAAGAAAGAGGAGATACGCTTGGGTTTGCATCGCTCAGATTATATGCTTGATGAACAATCTAAATTACTCCTTCAGATAGAGATGAACACAATTTCATCTTCATTTGCAGGGCTCAGTGGTCTTGTCTGCCAACTTCACAGGAGCTTACTTGGTAACTATGGAGAATTTCTTGGATTAGATCCCAAAAGGATTCCTGATAATGCTGCAGTCAGTCAGTTTTCAGTGGCTTTGGCCAGAGCTTGGACTGAATACAACAACCCTAGGGCCGCAGTTCTATTTGTCGTTCAGGCTGAAGAACGCAACATGTATGACCAACATTGGCTCTCTACTTCATTGAAGGAAAAATATAACATATCAACTCCTGAAATTGACGCCAAGGCGGAGTTTCTACCAGATGGAACATTTGTTGTTGGCGGCCAAGTAATTGGAATAGTTTATTTCAGAGCTGGGTATACCCCAAATGATTATCCTTCTGAATCAGAGTGGAGAGCTAGGTTACTTATGGAGCAATCATCCGCCATCAAGTGTCCATCAATATCTTATCATCTAGCTGGAACAAAAAAAGTTCAACAAGAACTTGCTAAGCCTAATGTTCTCGAGAGGTTTCTTGATGATAAAGAAGACATTGCAAAATTACGGAAATGCTTTGCAGGATTGTGGAGTTTGGACGACTCAGAAATTGTTAGAAAAGCCAGAGTTATTTGTCATGAAGCCCCAAAGAGAGGGCGGAGGGAACAATATCTATGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

311

Amino Acids

35.38

Weight (kDa)

6.68

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSH_synth_ATP	PF03917	2 - 300	1e-64	Eukaryotic glutathione synthase, ATP binding domain
GSH_synthase	PF03199	150 - 244	9.2e-29	Eukaryotic glutathione synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	420
AccI	GTMKAC	1 cut(s)	632
AciI	CCGC	5 cut(s)	447, 560, 594, 696, 907
AclWI	GGATC	2 cut(s)	122, 353
AcoI	YGGCCR	2 cut(s)	411, 595
AcsI	RAATTY	1 cut(s)	344
AcuI	CTGAAG	2 cut(s)	236, 492
AcyI	GRCGYC	1 cut(s)	552
AfiI	CCNNNNNNNGG	2 cut(s)	420, 902
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	3 cut(s)	25, 517, 749
AluBI	AGCT	5 cut(s)	324, 419, 626, 671, 731
AluI	AGCT	5 cut(s)	324, 419, 626, 671, 731
AlwI	GGATC	2 cut(s)	122, 353
Ama87I	CYCGRG	1 cut(s)	776
AoxI	GGCC	3 cut(s)	411, 444, 595
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	344
AspA2I	CCTAGG	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	444
AvaI	CYCGRG	1 cut(s)	776
AvrII	CCTAGG	1 cut(s)	440
BalI	TGGCCA	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	807
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	3 cut(s)	569, 707, 718
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciVI	GTATCC	1 cut(s)	76
BfaI	CTAG	5 cut(s)	141, 170, 441, 672, 728
BfmI	CTRYAG	2 cut(s)	95, 384
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	3 cut(s)	384, 447, 595
BlnI	CCTAGG	1 cut(s)	440
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	3 cut(s)	385, 448, 596
BmeT110I	CYCGRG	1 cut(s)	776
BmgT120I	GGNCC	1 cut(s)	444
BmiI	GGNNCC	1 cut(s)	45
BmsI	GCATC	2 cut(s)	156, 217
BpiI	GAAGAC	1 cut(s)	807
Bpu1102I	GCTNAGC	1 cut(s)	762
BsaHI	GRCGYC	1 cut(s)	552
BsaJI	CCNNGG	2 cut(s)	440, 555
Bsc4I	CCNNNNNNNGG	2 cut(s)	420, 902
Bse3DI	GCAATG	1 cut(s)	804
BseDI	CCNNGG	2 cut(s)	440, 555
BseGI	GGATG	1 cut(s)	692
BseLI	CCNNNNNNNGG	2 cut(s)	420, 902
BseMI	GCAATG	1 cut(s)	804
BseMII	CTCAG	3 cut(s)	228, 307, 867
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	370
BseYI	CCCAGC	1 cut(s)	626
BshFI	GGCC	3 cut(s)	413, 446, 597
BsiHKCI	CYCGRG	1 cut(s)	776
BslI	CCNNNNNNNGG	2 cut(s)	420, 902
BsnI	GGCC	3 cut(s)	413, 446, 597
BsoBI	CYCGRG	1 cut(s)	776
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	3 cut(s)	67, 127, 358
Bsp1720I	GCTNAGC	1 cut(s)	762
BspACI	CCGC	5 cut(s)	447, 560, 594, 696, 907
BspANI	GGCC	3 cut(s)	413, 446, 597
BspCNI	CTCAG	3 cut(s)	227, 306, 866
BspHI	TCATGA	1 cut(s)	886
BspLI	GGNNCC	1 cut(s)	45
BspMAI	CTGCAG	2 cut(s)	99, 388
BspPI	GGATC	2 cut(s)	122, 353
BsrDI	GCAATG	1 cut(s)	804
BssECI	CCNNGG	2 cut(s)	440, 555
BssMI	GATC	3 cut(s)	67, 127, 358
BssNAI	GTATAC	1 cut(s)	633
BssNI	GRCGYC	1 cut(s)	552
BssT1I	CCWWGG	2 cut(s)	440, 555
Bst1107I	GTATAC	1 cut(s)	633
Bst4CI	ACNGT	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	552
BstDEI	CTNAG	4 cut(s)	214, 293, 762, 853
BstF5I	GGATG	1 cut(s)	692
BstKTI	GATC	3 cut(s)	70, 130, 361
BstMBI	GATC	3 cut(s)	67, 127, 358
BstNSI	RCATGY	1 cut(s)	487
BstSFI	CTRYAG	2 cut(s)	95, 384
BstV1I	GCAGC	1 cut(s)	370
BstV2I	GAAGAC	1 cut(s)	807
BstX2I	RGATCY	2 cut(s)	127, 358
BstXI	CCANNNNNNTGG	1 cut(s)	605
BstYI	RGATCY	2 cut(s)	127, 358
BstZ17I	GTATAC	1 cut(s)	633
BsuI	GTATCC	1 cut(s)	76
BsuRI	GGCC	3 cut(s)	413, 446, 597
BtgZI	GCGATG	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	692
BtsIMutI	CAGTG	3 cut(s)	104, 301, 408
CciI	TCATGA	1 cut(s)	886
Cfr13I	GGNCC	1 cut(s)	444
CseI	GACGC	1 cut(s)	560
CviAII	CATG	3 cut(s)	158, 484, 887
DdeI	CTNAG	4 cut(s)	214, 293, 762, 853
DpnI	GATC	3 cut(s)	69, 129, 360
DpnII	GATC	3 cut(s)	67, 127, 358
EaeI	YGGCCR	2 cut(s)	411, 595
EciI	GGCGGA	3 cut(s)	575, 685, 922
Eco130I	CCWWGG	2 cut(s)	440, 555
Eco24I	GRGCYC	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	236, 492
Eco88I	CYCGRG	1 cut(s)	776
EcoT14I	CCWWGG	2 cut(s)	440, 555
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	2 cut(s)	440, 555
FaeI	CATG	3 cut(s)	161, 487, 890
FatI	CATG	3 cut(s)	157, 483, 886
FblI	GTMKAC	1 cut(s)	632
Fnu4HI	GCNGC	3 cut(s)	384, 447, 595
FokI	GGATG	1 cut(s)	679
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	3 cut(s)	384, 447, 595
FspBI	CTAG	5 cut(s)	141, 170, 441, 672, 728
GluI	GCNGC	3 cut(s)	384, 447, 595
GsaI	CCCAGC	1 cut(s)	630
HaeIII	GGCC	3 cut(s)	413, 446, 597
HgaI	GACGC	1 cut(s)	560
Hin1I	GRCGYC	1 cut(s)	552
Hin1II	CATG	3 cut(s)	161, 487, 890
HinfI	GANTC	6 cut(s)	25, 90, 101, 370, 656, 851
Hpy166II	GTNNAC	1 cut(s)	633
Hpy188I	TCNGA	6 cut(s)	217, 255, 623, 655, 661, 856
Hpy188III	TCNNGA	9 cut(s)	11, 111, 141, 374, 542, 776, 778, 788, 887
Hpy8I	GTNNAC	1 cut(s)	633
HpyAV	CCTTC	3 cut(s)	260, 511, 660
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4V	TGCA	6 cut(s)	97, 208, 287, 386, 809, 830
HpyF3I	CTNAG	4 cut(s)	214, 293, 762, 853
Hsp92I	GRCGYC	1 cut(s)	552
Hsp92II	CATG	3 cut(s)	161, 487, 890
Kzo9I	GATC	3 cut(s)	67, 127, 358
LmnI	GCTCC	3 cut(s)	49, 321, 685
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	2 cut(s)	156, 217
MaeI	CTAG	5 cut(s)	141, 170, 441, 672, 728
MaeIII	GTNAC	2 cut(s)	332, 675
MalI	GATC	3 cut(s)	69, 129, 360
MboI	GATC	3 cut(s)	67, 127, 358
MboII	GAAGA	4 cut(s)	130, 270, 485, 812
MflI	RGATCY	2 cut(s)	127, 358
MhlI	GDGCHC	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	413
MluCI	AATT	7 cut(s)	242, 270, 344, 546, 603, 812, 858
MluNI	TGGCCA	1 cut(s)	413
MlyI	GAGTC	1 cut(s)	845
MnlI	CCTC	4 cut(s)	181, 774, 896, 903
Mox20I	TGGCCA	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	413
MseI	TTAA	1 cut(s)	54
MslI	CAYNNNNRTG	1 cut(s)	156
Msp20I	TGGCCA	1 cut(s)	413
NdeII	GATC	3 cut(s)	67, 127, 358
NlaIII	CATG	3 cut(s)	161, 487, 890
NlaIV	GGNNCC	1 cut(s)	45
NspI	RCATGY	1 cut(s)	487
PaeR7I	CTCGAG	1 cut(s)	776
PagI	TCATGA	1 cut(s)	886
PciI	ACATGT	1 cut(s)	483
PfeI	GAWTC	5 cut(s)	25, 90, 101, 370, 656
PflMI	CCANNNNNTGG	1 cut(s)	420
PkrI	GCNGC	3 cut(s)	385, 448, 596
PleI	GAGTC	1 cut(s)	845
PpsI	GAGTC	1 cut(s)	845
PscI	ACATGT	1 cut(s)	483
PspFI	CCCAGC	1 cut(s)	626
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	444
PstI	CTGCAG	2 cut(s)	99, 388
PsuI	RGATCY	2 cut(s)	127, 358
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	3 cut(s)	384, 447, 595
Sau3AI	GATC	3 cut(s)	67, 127, 358
Sau96I	GGNCC	1 cut(s)	444
SbfI	CCTGCAGG	1 cut(s)	99
SchI	GAGTC	1 cut(s)	845
SdaI	CCTGCAGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	7 cut(s)	326, 421, 628, 673, 677, 733, 785
SfaNI	GCATC	2 cut(s)	156, 217
SfcI	CTRYAG	2 cut(s)	95, 384
Sfr274I	CTCGAG	1 cut(s)	776
SlaI	CTCGAG	1 cut(s)	776
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
Sse8387I	CCTGCAGG	1 cut(s)	99
Sse9I	AATT	7 cut(s)	242, 270, 344, 546, 603, 812, 858
SsiI	CCGC	5 cut(s)	447, 560, 594, 696, 907
SspMI	CTAG	5 cut(s)	141, 170, 441, 672, 728
StyI	CCWWGG	2 cut(s)	440, 555
TaaI	ACNGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	70, 777
TasI	AATT	7 cut(s)	242, 270, 344, 546, 603, 812, 858
TauI	GCSGC	2 cut(s)	449, 597
TfiI	GAWTC	5 cut(s)	25, 90, 101, 370, 656
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	3 cut(s)	111, 301, 408
TseI	GCWGC	1 cut(s)	383
TspDTI	ATGAA	8 cut(s)	72, 146, 246, 264, 270, 278, 501, 903
TspGWI	ACGGA	1 cut(s)	832
TspRI	CASTG	3 cut(s)	111, 301, 408
Van91I	CCANNNNNTGG	1 cut(s)	420
XapI	RAATTY	1 cut(s)	344
XbaI	TCTAGA	1 cut(s)	140
XceI	RCATGY	1 cut(s)	487
XhoI	CTCGAG	1 cut(s)	776
XmaJI	CCTAGG	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	632
XspI	CTAG	5 cut(s)	141, 170, 441, 672, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.