Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Forward (+)

2407837 .. 2408913

Gene Structure 1077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00079380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGGTGCTTCACTTTCCATTCCTCTCACCGCTGATACCATCACCCTTCTCCACTCAAATCCCAGTACCACCTTAATTATTTTCTCAATCAAGATTACAGAACCCAGTGTTCAAATTAACCCCACTAACCAAATCTTCAAGACCCAGTTGAAGACCATGTCTCAACCCTCTCGAGTTTTGCCTGCCAATGGTGGCAAAGTTGTAGCTAGGGAGACCCAGGATGAAAGTAGCATAAGGCCAATTAATGTTGATGGGATTGATCAGGGACTGGTTGGCAAGATGGTGTATGATGCTCTTGTTTGGAGCTCAATTCATGGCCTTGTTGTTGGTGACAAGTCTGTTCAGAGGTCATCAACAATACCTGGAGTAGGAATGGTACATGCACCATTCGCTTTAATTCCAATGCCGTTTCCAAAAAGTCAGTTGAATCAAGCAAATGAGTTGGCTCCCATATTTAATGAACTTGTTGATCGAATAGAGATGAACACAATTTCATCTTCATTTGCAGGGCTCAGTGGTCTTGTCTGCCAACTTCACAGGAGCTTACTTGCGGCTTTGGCCAGAGCTTGGACTGAATACAACAACCCTAAGGCCGCAGTTCTATTTGTCGTTCAGGTTGAAGAACGCAACATGTATGACCAACATTGGCTCTCTACTTCATTGAAGGAAAAATATAACATATCAACTCTTCGAAAAACTTTGGCTGAAATTGACGCCGAGGTGGAGTTTCTACCAGATGGAACATTTGTTGTTAGCGGCCAAGTAATTGCAATAGTTTATTTCAGAGCTGGGTATACCCCAAATGATTATATATCCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

273

Amino Acids

29.95

Weight (kDa)

5.96

Isoelectric Point (pI)

32.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSH_synth_ATP	PF03917	93 - 159	8.7e-11	Eukaryotic glutathione synthase, ATP binding domain
GSH_synthase	PF03199	199 - 271	1.9e-18	Eukaryotic glutathione synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	567
AccI	GTMKAC	1 cut(s)	794
AciI	CCGC	4 cut(s)	30, 551, 594, 756
AcoI	YGGCCR	2 cut(s)	558, 757
AcyI	GRCGYC	1 cut(s)	714
AfaI	GTAC	2 cut(s)	67, 378
AfiI	CCNNNNNNNGG	3 cut(s)	188, 368, 567
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	6 cut(s)	113, 139, 151, 427, 620, 664
AjnI	CCWGG	2 cut(s)	216, 361
AluBI	AGCT	5 cut(s)	206, 306, 543, 566, 788
AluI	AGCT	5 cut(s)	206, 306, 543, 566, 788
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	2 cut(s)	165, 206
AlwNI	CAGNNNCTG	1 cut(s)	268
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	5 cut(s)	236, 316, 558, 591, 757
AseI	ATTAAT	1 cut(s)	243
AsuHPI	GGTGA	3 cut(s)	19, 34, 341
AsuII	TTCGAA	1 cut(s)	691
AvaI	CYCGRG	1 cut(s)	171
AxyI	CCTNAGG	1 cut(s)	588
BalI	TGGCCA	1 cut(s)	560
BanII	GRGCYC	2 cut(s)	308, 513
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	308
BccI	CCATC	4 cut(s)	47, 245, 274, 731
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	218, 363
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	165, 206
BfaI	CTAG	1 cut(s)	207
BisI	GCNGC	3 cut(s)	552, 594, 757
BlsI	GCNGC	3 cut(s)	553, 595, 758
Bme1390I	CCNGG	2 cut(s)	218, 363
BmeT110I	CYCGRG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	218, 363
BmrI	ACTGGG	3 cut(s)	57, 99, 139
BmsI	GCATC	1 cut(s)	280
BmuI	ACTGGG	3 cut(s)	57, 99, 139
BpiI	GAAGAC	1 cut(s)	158
BpmI	CTGGAG	1 cut(s)	384
Bpu14I	TTCGAA	1 cut(s)	691
BsaHI	GRCGYC	1 cut(s)	714
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	216, 717
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 368, 567
Bse1I	ACTGG	4 cut(s)	63, 105, 145, 273
Bse21I	CCTNAGG	1 cut(s)	588
BseBI	CCWGG	2 cut(s)	218, 363
BseDI	CCNNGG	2 cut(s)	216, 717
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	3 cut(s)	188, 368, 567
BseMII	CTCAG	1 cut(s)	526
BseNI	ACTGG	4 cut(s)	63, 105, 145, 273
BseYI	CCCAGC	1 cut(s)	788
BshFI	GGCC	5 cut(s)	238, 318, 560, 593, 759
BsiHKAI	GWGCWC	1 cut(s)	308
BsiHKCI	CYCGRG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	3 cut(s)	188, 368, 567
BsmAI	GTCTC	2 cut(s)	165, 206
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	5 cut(s)	238, 318, 560, 593, 759
Bso31I	GGTCTC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	171
Bsp119I	TTCGAA	1 cut(s)	691
Bsp1286I	GDGCHC	2 cut(s)	308, 513
Bsp143I	GATC	2 cut(s)	259, 469
BspACI	CCGC	4 cut(s)	30, 551, 594, 756
BspANI	GGCC	5 cut(s)	238, 318, 560, 593, 759
BspCNI	CTCAG	1 cut(s)	525
BspLI	GGNNCC	1 cut(s)	447
BspT104I	TTCGAA	1 cut(s)	691
BspTNI	GGTCTC	1 cut(s)	206
BsrI	ACTGG	4 cut(s)	63, 105, 145, 273
BssECI	CCNNGG	2 cut(s)	216, 717
BssMI	GATC	2 cut(s)	259, 469
BssNAI	GTATAC	1 cut(s)	795
BssNI	GRCGYC	1 cut(s)	714
Bst1107I	GTATAC	1 cut(s)	795
Bst2UI	CCWGG	2 cut(s)	218, 363
Bst6I	CTCTTC	1 cut(s)	693
BstACI	GRCGYC	1 cut(s)	714
BstBI	TTCGAA	1 cut(s)	691
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	512, 588
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	2 cut(s)	262, 472
BstMAI	GTCTC	2 cut(s)	165, 206
BstMBI	GATC	2 cut(s)	259, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 557
BstNI	CCWGG	2 cut(s)	218, 363
BstNSI	RCATGY	2 cut(s)	383, 634
BstSCI	CCNGG	2 cut(s)	216, 361
BstV2I	GAAGAC	1 cut(s)	158
BstZ17I	GTATAC	1 cut(s)	795
Bsu36I	CCTNAGG	1 cut(s)	588
BsuRI	GGCC	5 cut(s)	238, 318, 560, 593, 759
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	2 cut(s)	112, 520
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	268
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	2 cut(s)	66, 377
CviAII	CATG	4 cut(s)	157, 314, 380, 631
CviQI	GTAC	2 cut(s)	66, 377
DdeI	CTNAG	2 cut(s)	512, 588
DpnI	GATC	2 cut(s)	261, 471
DpnII	GATC	2 cut(s)	259, 469
EaeI	YGGCCR	2 cut(s)	558, 757
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
Ecl136II	GAGCTC	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	308, 513
Eco31I	GGTCTC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	306
Eco81I	CCTNAGG	1 cut(s)	588
Eco88I	CYCGRG	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	306
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoRII	CCWGG	2 cut(s)	216, 361
EcoT38I	GRGCYC	2 cut(s)	308, 513
FaeI	CATG	4 cut(s)	160, 317, 383, 634
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	4 cut(s)	156, 313, 379, 630
FbaI	TGATCA	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	794
Fnu4HI	GCNGC	3 cut(s)	552, 594, 757
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	2 cut(s)	308, 513
Fsp4HI	GCNGC	3 cut(s)	552, 594, 757
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	3 cut(s)	552, 594, 757
GsaI	CCCAGC	1 cut(s)	792
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	5 cut(s)	238, 318, 560, 593, 759
HgaI	GACGC	1 cut(s)	722
Hin1I	GRCGYC	1 cut(s)	714
Hin1II	CATG	4 cut(s)	160, 317, 383, 634
HinfI	GANTC	1 cut(s)	427
HphI	GGTGA	3 cut(s)	19, 34, 341
Hpy166II	GTNNAC	1 cut(s)	795
Hpy188I	TCNGA	3 cut(s)	345, 785, 821
Hpy188III	TCNNGA	3 cut(s)	91, 139, 171
Hpy8I	GTNNAC	1 cut(s)	795
HpyAV	CCTTC	2 cut(s)	56, 658
HpyCH4V	TGCA	3 cut(s)	383, 506, 770
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 557
HpyF3I	CTNAG	2 cut(s)	512, 588
Hsp92I	GRCGYC	1 cut(s)	714
Hsp92II	CATG	4 cut(s)	160, 317, 383, 634
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	259, 469
LmnI	GCTCC	3 cut(s)	303, 451, 540
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	2 cut(s)	261, 471
MboI	GATC	2 cut(s)	259, 469
MboII	GAAGA	5 cut(s)	127, 163, 489, 632, 680
MhlI	GDGCHC	2 cut(s)	308, 513
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	8 cut(s)	75, 114, 240, 309, 396, 489, 708, 765
MluNI	TGGCCA	1 cut(s)	560
MnlI	CCTC	4 cut(s)	33, 178, 339, 712
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
MseI	TTAA	5 cut(s)	74, 117, 243, 395, 456
Msp20I	TGGCCA	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	32
MspR9I	CCNGG	2 cut(s)	218, 363
MvaI	CCWGG	2 cut(s)	218, 363
MwoI	GCNNNNNNNGC	2 cut(s)	389, 557
NdeII	GATC	2 cut(s)	259, 469
NlaIII	CATG	4 cut(s)	160, 317, 383, 634
NlaIV	GGNNCC	1 cut(s)	447
NmeAIII	GCCGAG	1 cut(s)	742
NmuCI	GTSAC	1 cut(s)	329
NspI	RCATGY	2 cut(s)	383, 634
NspV	TTCGAA	1 cut(s)	691
PaeR7I	CTCGAG	1 cut(s)	171
PciI	ACATGT	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	427
PflFI	GACNNNGTC	1 cut(s)	157
PflMI	CCANNNNNTGG	1 cut(s)	567
PkrI	GCNGC	3 cut(s)	553, 595, 758
PscI	ACATGT	1 cut(s)	630
PshBI	ATTAAT	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	308
Psp6I	CCWGG	2 cut(s)	216, 361
PspFI	CCCAGC	1 cut(s)	788
PspGI	CCWGG	2 cut(s)	216, 361
PspN4I	GGNNCC	1 cut(s)	447
PstNI	CAGNNNCTG	1 cut(s)	268
PsyI	GACNNNGTC	1 cut(s)	157
RsaI	GTAC	2 cut(s)	67, 378
RsaNI	GTAC	2 cut(s)	66, 377
SacI	GAGCTC	1 cut(s)	308
SaqAI	TTAA	5 cut(s)	74, 117, 243, 395, 456
SatI	GCNGC	3 cut(s)	552, 594, 757
Sau3AI	GATC	2 cut(s)	259, 469
ScrFI	CCNGG	2 cut(s)	218, 363
SduI	GDGCHC	2 cut(s)	308, 513
SfaNI	GCATC	1 cut(s)	280
Sfr274I	CTCGAG	1 cut(s)	171
SfuI	TTCGAA	1 cut(s)	691
SlaI	CTCGAG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	171
SmoI	CTYRAG	1 cut(s)	171
Sse9I	AATT	8 cut(s)	75, 114, 240, 309, 396, 489, 708, 765
SsiI	CCGC	4 cut(s)	30, 551, 594, 756
SspMI	CTAG	1 cut(s)	207
SstI	GAGCTC	1 cut(s)	308
StyD4I	CCNGG	2 cut(s)	216, 361
TaqI	TCGA	3 cut(s)	172, 472, 691
TasI	AATT	8 cut(s)	75, 114, 240, 309, 396, 489, 708, 765
TauI	GCSGC	3 cut(s)	554, 596, 759
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	5 cut(s)	74, 117, 243, 395, 456
Tru9I	TTAA	5 cut(s)	74, 117, 243, 395, 456
TscAI	CASTG	2 cut(s)	112, 520
TseFI	GTSAC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	7 cut(s)	237, 302, 474, 483, 489, 497, 648
TspRI	CASTG	2 cut(s)	112, 520
Tth111I	GACNNNGTC	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	567
VspI	ATTAAT	1 cut(s)	243
XagI	CCTNNNNNAGG	1 cut(s)	366
XceI	RCATGY	2 cut(s)	383, 634
XhoI	CTCGAG	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	794
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.