Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

81313812 .. 81314186

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022146

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGTGCTTCACTTTCCATTCCTCTCACCGCTGATACCATCACCCTTCTCTACTCAAATCCCAGTACCACCTTATTTTCTCAATCAAGATTACAGAACCCAGTGTTCAAATTAAACCCCACTAACCAAATCTTCAAGACCCAGTTGAAGACCATGTCTCAACCCTCTCAAGTTTTGCCTGCCAATGGTGGCAAAGTTGTAGCTAGGGAGACCCAGGATGAAAGTAGCACAAGGCCAATTAATGTTGATGGGATTGATCAGGGACTGGTTGACAAGATGGTGTATGATGCTCTTGTTTGGAGCTCAATTCATGGCCTTGTTGTTGGTGACAGGTCTGTTCAGAGGTCATCAACAATACCTGGAGTAGGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

125

Amino Acids

13.34

Weight (kDa)

8.09

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	30
AfaI	GTAC	1 cut(s)	67
AfiI	CCNNNNNNNGG	2 cut(s)	185, 365
AgsI	TTSAA	3 cut(s)	109, 136, 148
AjnI	CCWGG	2 cut(s)	213, 358
AluBI	AGCT	2 cut(s)	203, 303
AluI	AGCT	2 cut(s)	203, 303
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	2 cut(s)	162, 203
AlwNI	CAGNNNCTG	1 cut(s)	265
AoxI	GGCC	2 cut(s)	233, 313
AseI	ATTAAT	1 cut(s)	240
AsuHPI	GGTGA	3 cut(s)	19, 34, 338
BanII	GRGCYC	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	305
BccI	CCATC	3 cut(s)	47, 242, 271
BciT130I	CCWGG	2 cut(s)	215, 360
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	162, 203
BfaI	CTAG	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	215, 360
BmrFI	CCNGG	2 cut(s)	215, 360
BmrI	ACTGGG	3 cut(s)	57, 95, 136
BmsI	GCATC	1 cut(s)	277
BmuI	ACTGGG	3 cut(s)	57, 95, 136
BpiI	GAAGAC	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 365
Bse1I	ACTGG	4 cut(s)	63, 101, 142, 270
BseBI	CCWGG	2 cut(s)	215, 360
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	2 cut(s)	185, 365
BseNI	ACTGG	4 cut(s)	63, 101, 142, 270
BshFI	GGCC	2 cut(s)	235, 315
BsiHKAI	GWGCWC	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	2 cut(s)	185, 365
BsmAI	GTCTC	2 cut(s)	162, 203
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	2 cut(s)	235, 315
Bso31I	GGTCTC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	2 cut(s)	235, 315
BspTNI	GGTCTC	1 cut(s)	203
BsrI	ACTGG	4 cut(s)	63, 101, 142, 270
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	256
Bst2UI	CCWGG	2 cut(s)	215, 360
BstC8I	GCNNGC	1 cut(s)	180
BstENI	CCTNNNNNAGG	1 cut(s)	363
BstF5I	GGATG	1 cut(s)	223
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	2 cut(s)	162, 203
BstMBI	GATC	1 cut(s)	256
BstNI	CCWGG	2 cut(s)	215, 360
BstSCI	CCNGG	2 cut(s)	213, 358
BstV2I	GAAGAC	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	235, 315
BtsCI	GGATG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	180
CaiI	CAGNNNCTG	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	66
CviAII	CATG	2 cut(s)	154, 311
CviJI	RGCY	4 cut(s)	203, 235, 303, 315
CviKI_1	RGCY	4 cut(s)	203, 235, 303, 315
CviQI	GTAC	1 cut(s)	66
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	303
EcoICRI	GAGCTC	1 cut(s)	303
EcoNI	CCTNNNNNAGG	1 cut(s)	363
EcoRII	CCWGG	2 cut(s)	213, 358
EcoT38I	GRGCYC	1 cut(s)	305
FaeI	CATG	2 cut(s)	157, 314
FaiI	YATR	4 cut(s)	155, 285, 312, 373
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	2 cut(s)	153, 310
FbaI	TGATCA	1 cut(s)	256
FokI	GGATG	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	305
FspBI	CTAG	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	235, 315
Hin1II	CATG	2 cut(s)	157, 314
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HphI	GGTGA	3 cut(s)	19, 34, 338
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	2 cut(s)	87, 136
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	157, 314
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	1 cut(s)	300
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	2 cut(s)	124, 160
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	3 cut(s)	110, 237, 306
MnlI	CCTC	3 cut(s)	33, 175, 336
MseI	TTAA	2 cut(s)	113, 240
MspA1I	CMGCKG	1 cut(s)	32
MspR9I	CCNGG	2 cut(s)	215, 360
MvaI	CCWGG	2 cut(s)	215, 360
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	157, 314
NmuCI	GTSAC	1 cut(s)	326
PflFI	GACNNNGTC	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	305
Psp6I	CCWGG	2 cut(s)	213, 358
PspGI	CCWGG	2 cut(s)	213, 358
PstNI	CAGNNNCTG	1 cut(s)	265
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	1 cut(s)	67
RsaNI	GTAC	1 cut(s)	66
SacI	GAGCTC	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	113, 240
Sau3AI	GATC	1 cut(s)	256
ScrFI	CCNGG	2 cut(s)	215, 360
SduI	GDGCHC	1 cut(s)	305
SetI	ASST	6 cut(s)	74, 205, 305, 335, 347, 361
SfaNI	GCATC	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
Sse9I	AATT	3 cut(s)	110, 237, 306
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	1 cut(s)	204
SstI	GAGCTC	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	213, 358
TasI	AATT	3 cut(s)	110, 237, 306
Tru1I	TTAA	2 cut(s)	113, 240
Tru9I	TTAA	2 cut(s)	113, 240
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	234, 299
TspRI	CASTG	1 cut(s)	108
Tth111I	GACNNNGTC	1 cut(s)	154
VspI	ATTAAT	1 cut(s)	240
XagI	CCTNNNNNAGG	1 cut(s)	363
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.