Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

75990290 .. 75997218

Gene Structure 6929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0652300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3054 bp

ATGGCTTCTTCTACTGCGTGGGCGATGCTGTTATTGGCACAGTTGCTGGCCGCAAGATCGGAGTACATAGCTTACAATACGACGGCGGGGATCGTCCCGGAGAAACTCAACGTTCATTTGGTTCCTCACTCTCACGACGACGTCGGCTGGCTTAAGACGGTGGACCAGTACTACGTGGGCGCCAACAATTCAATTCGAGGTGCTTGTGTACAGAACGTCATTGACTCTGTCATCTCTGCCTTATTAGAGGACAAGAATCGCAAGTTCATCTACGTTGAGATTGCATTCTTTCAGAGATGGTGGAGACAGCAAAGCCCTGCTATGAAGATCAAAGTCAAGGACCTGGTCAGCTCCGGTCAACTTGAGTTCATAAATGGGGGCATGTGTATGCACGACGAGGCCACCCCGCATTACATTGACTTGATTGATCAGACTACCCTAGGGCATCAATTTATACTGAAAGAGTTTGGTCAGACTCCTCGAGTTGGCTGGCAGATTGATCCTTTTGGCCATTCTGCTGTTCAAGCTTACTTGCTTGGTGCTGAGTTAGGTTTCGATTCCCTCTTTTTTGCTCGAATTGATTACCAAGATAGAGCAGTCCGGCTCAGGGATAAGACCCTTGAGGTTATATGGCAGGGTTCTAAGTCCCTTGCTGCATCTTCACAGATTTTCACTGGCGTATTCCCCAGGCACTATGATCCTCCAGATGGTTTCGTATTTGAAATAAATGATGTGTCACCTCCTATTCAGGATGACATTCTCCTGTTTGACTACAATGTTCAAGGGCGAGTCAATGACTTTGTTGCAGCTGCTTTAGCTCAGGCTAATGTGACAAGAACAAATCATATTATGTGGACCATGGGGACAGATTTTCGCTACCAATATGGAAATTCATGGTTCAGGCAGATGGACAAATTCATTCATTATGTCAACCAGGATGGGCGTGTCAATGCATTTTATTCAACTCCATCAATCTACACTGATGCAAAATATGCAGCAGATGAGCAATGGCCTGTCAAAACTGATGATTTCTTTCCATATGCGGATCATCCAAATGCATATTGGACCGGTTATTTTACAAGTCGTCCGGCCTTTAAAGGTTACGTCCGAATTTTGAGTGGTTACTATCTGGCAGCAAGGCAGTTGGAATTCTTCAAAGGCAGGAGTGATTCTGGAGCAAATACTGATGCATTAGCTGATGCTTTGGCTATTGTTCAACATCATGATGCAGTTAGTGGTACACAACGACAGCATGTTGCTGCTGATTATGCAATGCGATTATCAATAGGTTATTTGGAGGCTGAAAAGTTGGTTGCCTCTTCTCTTGCTTACCTTTCTGAGTCAGAACCAAGTTCTGGACAGAAGCGCATAGCCACAAAATTTGAACAGTGCCCTCTTCTAAACATCAGTTATTGTCCTCCATCAGAAACTGCTTTATCCGATGGGAAAAGCTTGGTTGTTGTTATCTACAATCCTCTTGGTTGGAAGAGAGAGGAAGTAATACGGATCCCTGTTTCCAATGAAAGGGTCACTGTTCAGGATTCTAGCCAAAGAAAAATTGATGCTCAGCTTTTACCTCTCTCAAATGCCACTTTGAAATTAAGAAGTTACTATGTCAGAGCATATTTGGGTAATACCCCAAGTGAACCACCCAAATATTGGCTAGCTTTTTCAGTAACGGTACCACCACTTGGTTTCAGCTCTTACATTGTCTCAAGTGCAAATCAGACAGATAAAGATCGAAGCTCAACTATCTCCAAAGTATACACATCAGAAGGAAATACAAATAAGACCATACAAGTTGGGCAAGGGAGTTTAAAGCTACTTTATTCTGCAGAAGGAAAGCTTGCTCGTTATATTAACAGCAGAAATATGGTTACAGCGGTTGCTGAACAATCATATAGTTATTATACTGGAAACGATGGAACTGACAAAGATCCTCAGGCCTCTGGGGCATATGTATTTCGACCGAATGGCACAGTTGTTATAAAATCTGAAGAAAAGGTTTCTCTCACCGTGATGCGAGGCCCATTATTGGATGAAGTGCATCAGCAGATCAATCCATGGGTATCTCAGATTACAAGGTTATACAAAGGAAAGGAGCATGCTGAAGTAGAGTTCACTATTGGGCCTATACCCGTGGATGATGGTATTGGAAAAGAAATCACAACTCAACTTACAACAGCCATGAAGACCAATAAGACATTCTACACAGATTCCAATGGTCGCGACTTCATTAAGCGGATTCGAGATTTCAGGACAGATTGGGACCTACAAGTGAACCAACCAATTGCTGGAAATTATTACCCGATTAATCTTGGAATTTATGTGCAAGATAGCACTACAGAACTTTCAGTCTTGGTTGATCGTGCAGTGGGAGGATCTAGCTTAGTAGATGGTCAAGTAGAGCTGATGCTCCACAGGAGGCTAACTCATGATGATATCAGAGGTGTTGGCGAGATACTAAATGAAACGGTTTGCGTTTCCGAGAAGTGTGAAGGTTTAACTATCCAAGGGAAGTTTTATGTCAGAATCGATCCTGTTGGAGAAGGTTCTAAGTGGCGTCGCACAGCTGGCCAAGAGATAAGTGCTCCACTTTTATTGGCCTTCGCCGAACAGGAAGGAAATGATTGGATGAATTCTCATGTATCAACATTTTCTGGAATTGACCCTTCCTATGCCTTACCAGACAATGTTGCTGTGATAACCCTCCAGGAACTTGAAAATGGGAAAGTTCTCCTTCGTTTGGCTCACCTATACGAGACTGGCGAGGACAAGGACTATTCTGTATTGGCAAATGTGGAACTAAGAAGGTTGTTTCCGAGGAAGAAGATCAGCAAAGTGACAGAGATGAGTTTATCTGCCAATCAAGAAAGAGCTGAAATGGAGAAGAGGAAATTAGTTTGGAAAGTGAAAGGTTCTGCCGCGGCCGAAGAGTCTAAGGTGGTGAGGGGAGGCGCTGTTGACCCTGCAAAACTGGTGGTGGAACTAGCACCAATGGAAATACGCACTTTCCTTATTGACTTGGATTACCTCCATATGTATGGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

1017

Amino Acids

114.15

Weight (kDa)

5.91

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_38N	PF01074	37 - 348	3.2e-84	Glycosyl hydrolases family 38 N-terminal domain
Alpha-mann_mid	PF09261	353 - 445	4.5e-19	Alpha mannosidase middle domain
Laman-like_dom	PF21260	520 - 571	1.5e-09	Lysosomal alpha-mannosidase-like, central domain
Glyco_hydro_38C	PF07748	603 - 816	3.5e-45	Glycosyl hydrolases family 38 C-terminal domain
Glyco_hydro38C2	PF17677	898 - 1005	1.4e-07	Glycosyl hydrolases family 38 C-terminal beta sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1988
AatII	GACGTC	1 cut(s)	144
Acc65I	GGTACC	1 cut(s)	1681
AccB1I	GGYRCC	2 cut(s)	179, 1681
AccB7I	CCANNNNNTGG	4 cut(s)	1355, 1659, 1691, 2294
AccI	GTMKAC	1 cut(s)	1764
AccII	CGCG	2 cut(s)	2229, 2927
AciI	CCGC	8 cut(s)	51, 86, 407, 1043, 1883, 2242, 2925, 2927
AclI	AACGTT	1 cut(s)	111
AclWI	GGATC	9 cut(s)	98, 494, 692, 1053, 1501, 1514, 1931, 2389, 2531
AcoI	YGGCCR	4 cut(s)	48, 508, 2575, 2928
AcsI	RAATTY	7 cut(s)	889, 914, 1110, 1148, 1379, 2322, 2638
AcuI	CTGAAG	2 cut(s)	2016, 2130
AcyI	GRCGYC	3 cut(s)	141, 180, 2563
AfaI	GTAC	5 cut(s)	65, 170, 210, 1240, 1683
AflII	CTTAAG	1 cut(s)	152
AgeI	ACCGGT	1 cut(s)	1067
AjnI	CCWGG	4 cut(s)	342, 686, 933, 2712
AjuI	GAANNNNNNNTTGG	2 cut(s)	2189, 2221
Alw21I	GWGCWC	1 cut(s)	2593
Alw26I	GTCTC	3 cut(s)	298, 1717, 2756
AlwI	GGATC	9 cut(s)	98, 494, 692, 1053, 1501, 1514, 1931, 2389, 2531
AlwNI	CAGNNNCTG	2 cut(s)	46, 1430
Ama87I	CYCGRG	1 cut(s)	480
ApeKI	GCWGC	6 cut(s)	653, 806, 809, 995, 1133, 1259
ApoI	RAATTY	7 cut(s)	889, 914, 1110, 1148, 1379, 2322, 2638
AseI	ATTAAT	1 cut(s)	2313
AsiGI	ACCGGT	1 cut(s)	1067
Asp718I	GGTACC	1 cut(s)	1681
AspA2I	CCTAGG	1 cut(s)	439
AspLEI	GCGC	3 cut(s)	182, 1368, 2960
AspS9I	GGNCC	7 cut(s)	163, 340, 855, 1065, 2027, 2129, 2269
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	4 cut(s)	729, 2005, 2744, 2959
AsuNHI	GCTAGC	1 cut(s)	1663
AvaI	CYCGRG	1 cut(s)	480
AvaII	GGWCC	5 cut(s)	163, 340, 855, 1065, 2269
AvrII	CCTAGG	1 cut(s)	439
AxyI	CCTNAGG	1 cut(s)	1941
BaeGI	GKGCMC	1 cut(s)	1394
BalI	TGGCCA	2 cut(s)	510, 2577
BamHI	GGATCC	1 cut(s)	1506
BanI	GGYRCC	2 cut(s)	179, 1681
BbsI	GAAGAC	1 cut(s)	2198
Bbv12I	GWGCWC	1 cut(s)	2593
BbvI	GCAGC	6 cut(s)	640, 796, 818, 1007, 1145, 1246
BceAI	ACGGC	1 cut(s)	99
BciT130I	CCWGG	4 cut(s)	344, 688, 935, 2714
BclI	TGATCA	1 cut(s)	427
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	3 cut(s)	298, 1717, 2756
BfaI	CTAG	5 cut(s)	440, 1545, 1664, 2385, 2990
BfmI	CTRYAG	2 cut(s)	1833, 2343
BfoI	RGCGCY	2 cut(s)	183, 2961
BfrI	CTTAAG	1 cut(s)	152
BglI	GCCNNNNNGGC	1 cut(s)	1952
BisI	GCNGC	9 cut(s)	51, 654, 807, 810, 996, 1134, 1260, 2925, 2928
BlnI	CCTAGG	1 cut(s)	439
BlpI	GCTNAGC	1 cut(s)	1566
BlsI	GCNGC	9 cut(s)	52, 655, 808, 811, 997, 1135, 1261, 2926, 2929
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	5 cut(s)	98, 344, 688, 935, 2714
Bme18I	GGWCC	5 cut(s)	163, 340, 855, 1065, 2269
BmeT110I	CYCGRG	1 cut(s)	480
BmgT120I	GGNCC	7 cut(s)	163, 340, 855, 1065, 2027, 2129, 2269
BmiI	GGNNCC	6 cut(s)	123, 181, 1508, 1683, 2270, 3049
BmrFI	CCNGG	5 cut(s)	98, 344, 688, 935, 2714
BmtI	GCTAGC	1 cut(s)	1667
BpiI	GAAGAC	1 cut(s)	2198
BplI	GAGNNNNNCTC	2 cut(s)	2416, 2448
BpmI	CTGGAG	3 cut(s)	687, 1194, 2696
Bpu10I	CCTNAGC	2 cut(s)	605, 819
Bpu1102I	GCTNAGC	1 cut(s)	1566
BpuEI	CTTGAG	3 cut(s)	383, 641, 1699
BpuMI	CCSGG	1 cut(s)	98
Bsa29I	ATCGAT	1 cut(s)	2535
BsaAI	YACGTR	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	1737
BsaHI	GRCGYC	3 cut(s)	141, 180, 2563
BsaJI	CCNNGG	8 cut(s)	439, 686, 858, 2063, 2139, 2512, 2822, 2925
BsaWI	WCCGGW	2 cut(s)	353, 1067
BsaXI	ACNNNNNCTCC	2 cut(s)	2946, 2976
Bse118I	RCCGGY	1 cut(s)	1067
Bse1I	ACTGG	5 cut(s)	166, 679, 1918, 2770, 2982
Bse21I	CCTNAGG	1 cut(s)	1941
Bse3DI	GCAATG	2 cut(s)	1013, 1278
Bse8I	GATNNNNATC	1 cut(s)	1737
BseBI	CCWGG	4 cut(s)	344, 688, 935, 2714
BseCI	ATCGAT	1 cut(s)	2535
BseDI	CCNNGG	8 cut(s)	439, 686, 858, 2063, 2139, 2512, 2822, 2925
BseGI	GGATG	6 cut(s)	757, 943, 1048, 2044, 2149, 2640
BseJI	GATNNNNATC	1 cut(s)	1737
BseMI	GCAATG	2 cut(s)	1013, 1278
BseMII	CTCAG	7 cut(s)	534, 619, 833, 1329, 1580, 1955, 2087
BseNI	ACTGG	5 cut(s)	166, 679, 1918, 2770, 2982
BseRI	GAGGAG	1 cut(s)	468
BseSI	GKGCMC	1 cut(s)	1394
BseX3I	CGGCCG	1 cut(s)	2928
BseXI	GCAGC	6 cut(s)	640, 796, 818, 1007, 1145, 1246
BsgI	GTGCAG	1 cut(s)	2391
Bsh1236I	CGCG	2 cut(s)	2229, 2927
Bsh1285I	CGRYCG	2 cut(s)	1970, 2931
BshNI	GGYRCC	2 cut(s)	179, 1681
BshTI	ACCGGT	1 cut(s)	1067
BshVI	ATCGAT	1 cut(s)	2535
BsiEI	CGRYCG	2 cut(s)	1970, 2931
BsiHKAI	GWGCWC	1 cut(s)	2593
BsiHKCI	CYCGRG	1 cut(s)	480
BsiSI	CCGG	5 cut(s)	98, 354, 601, 1068, 1088
BslFI	GGGAC	4 cut(s)	80, 631, 877, 2282
BsmAI	GTCTC	3 cut(s)	298, 1717, 2756
BsmFI	GGGAC	4 cut(s)	80, 631, 877, 2282
BsmI	GAATGC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	480
Bsp1286I	GDGCHC	2 cut(s)	1394, 2593
Bsp1407I	TGTACA	1 cut(s)	208
Bsp1720I	GCTNAGC	1 cut(s)	1566
Bsp19I	CCATGG	2 cut(s)	858, 2063
Bsp68I	TCGCGA	1 cut(s)	2229
BspACI	CCGC	8 cut(s)	51, 86, 407, 1043, 1883, 2242, 2925, 2927
BspCNI	CTCAG	7 cut(s)	535, 618, 832, 1330, 1579, 1954, 2086
BspDI	ATCGAT	1 cut(s)	2535
BspFNI	CGCG	2 cut(s)	2229, 2927
BspHI	TCATGA	2 cut(s)	1222, 2434
BspLI	GGNNCC	6 cut(s)	123, 181, 1508, 1683, 2270, 3049
BspMAI	CTGCAG	1 cut(s)	1837
BspOI	GCTAGC	1 cut(s)	1667
BspPI	GGATC	9 cut(s)	98, 494, 692, 1053, 1501, 1514, 1931, 2389, 2531
BspT107I	GGYRCC	2 cut(s)	179, 1681
BspTI	CTTAAG	1 cut(s)	152
BsrDI	GCAATG	2 cut(s)	1013, 1278
BsrFI	RCCGGY	1 cut(s)	1067
BsrGI	TGTACA	1 cut(s)	208
BsrI	ACTGG	5 cut(s)	166, 679, 1918, 2770, 2982
BssAI	RCCGGY	1 cut(s)	1067
BssECI	CCNNGG	8 cut(s)	439, 686, 858, 2063, 2139, 2512, 2822, 2925
BssNAI	GTATAC	1 cut(s)	1765
BssNI	GRCGYC	3 cut(s)	141, 180, 2563
BssT1I	CCWWGG	4 cut(s)	439, 858, 2063, 2512
Bst1107I	GTATAC	1 cut(s)	1765
Bst2UI	CCWGG	4 cut(s)	344, 688, 935, 2714
Bst4CI	ACNGT	8 cut(s)	42, 160, 1389, 1534, 1681, 1981, 2017, 2476
Bst6I	CTCTTC	5 cut(s)	1324, 1401, 1481, 2885, 2928
BstACI	GRCGYC	3 cut(s)	141, 180, 2563
BstAFI	CTTAAG	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	992
BstAUI	TGTACA	1 cut(s)	208
BstBAI	YACGTR	1 cut(s)	175
BstC8I	GCNNGC	7 cut(s)	48, 149, 491, 1665, 1848, 2106, 2575
BstDSI	CCRYGG	4 cut(s)	858, 2063, 2139, 2925
BstF5I	GGATG	6 cut(s)	757, 943, 1048, 2044, 2149, 2640
BstFNI	CGCG	2 cut(s)	2229, 2927
BstH2I	RGCGCY	2 cut(s)	183, 2961
BstHHI	GCGC	3 cut(s)	182, 1368, 2960
BstMAI	GTCTC	3 cut(s)	298, 1717, 2756
BstMCI	CGRYCG	2 cut(s)	1970, 2931
BstMWI	GCNNNNNNNGC	6 cut(s)	524, 815, 992, 1268, 1952, 2574
BstNI	CCWGG	4 cut(s)	344, 688, 935, 2714
BstNSI	RCATGY	3 cut(s)	385, 1256, 2108
BstSCI	CCNGG	5 cut(s)	96, 342, 686, 933, 2712
BstSFI	CTRYAG	2 cut(s)	1833, 2343
BstSLI	GKGCMC	1 cut(s)	1394
BstUI	CGCG	2 cut(s)	2229, 2927
BstV1I	GCAGC	6 cut(s)	640, 796, 818, 1007, 1145, 1246
BstV2I	GAAGAC	1 cut(s)	2198
BstX2I	RGATCY	3 cut(s)	1506, 1936, 2381
BstXI	CCANNNNNNTGG	1 cut(s)	3044
BstYI	RGATCY	3 cut(s)	1506, 1936, 2381
BstZ17I	GTATAC	1 cut(s)	1765
BstZI	CGGCCG	1 cut(s)	2928
Bsu15I	ATCGAT	1 cut(s)	2535
Bsu36I	CCTNAGG	1 cut(s)	1941
BsuTUI	ATCGAT	1 cut(s)	2535
BtgI	CCRYGG	4 cut(s)	858, 2063, 2139, 2925
BtgZI	GCGATG	1 cut(s)	38
BtsCI	GGATG	6 cut(s)	757, 943, 1048, 2044, 2149, 2640
BtsI	GCAGTG	1 cut(s)	2379
BtsIMutI	CAGTG	5 cut(s)	672, 978, 1394, 1530, 2379
BtuMI	TCGCGA	1 cut(s)	2229
Cac8I	GCNNGC	7 cut(s)	48, 149, 491, 1665, 1848, 2106, 2575
CaiI	CAGNNNCTG	2 cut(s)	46, 1430
CciI	TCATGA	2 cut(s)	1222, 2434
CfoI	GCGC	3 cut(s)	182, 1368, 2960
Cfr10I	RCCGGY	1 cut(s)	1067
Cfr13I	GGNCC	7 cut(s)	163, 340, 855, 1065, 2027, 2129, 2269
Cfr42I	CCGCGG	1 cut(s)	2928
ClaI	ATCGAT	1 cut(s)	2535
CseI	GACGC	1 cut(s)	2552
CsiI	ACCWGGT	1 cut(s)	342
Csp6I	GTAC	5 cut(s)	64, 169, 209, 1239, 1682
CspAI	ACCGGT	1 cut(s)	1067
CspCI	CAANNNNNGTGG	6 cut(s)	1363, 1398, 2583, 2618, 2961, 2996
CviQI	GTAC	5 cut(s)	64, 169, 209, 1239, 1682
DinI	GGCGCC	1 cut(s)	181
DraI	TTTAAA	2 cut(s)	1096, 1818
EaeI	YGGCCR	4 cut(s)	48, 508, 2575, 2928
EagI	CGGCCG	1 cut(s)	2928
Eam1104I	CTCTTC	5 cut(s)	1324, 1401, 1481, 2885, 2928
EarI	CTCTTC	5 cut(s)	1324, 1401, 1481, 2885, 2928
EclXI	CGGCCG	1 cut(s)	2928
Eco130I	CCWWGG	4 cut(s)	439, 858, 2063, 2512
Eco147I	AGGCCT	1 cut(s)	1946
Eco32I	GATATC	1 cut(s)	2443
Eco47I	GGWCC	5 cut(s)	163, 340, 855, 1065, 2269
Eco52I	CGGCCG	1 cut(s)	2928
Eco57I	CTGAAG	2 cut(s)	2016, 2130
Eco81I	CCTNAGG	1 cut(s)	1941
Eco88I	CYCGRG	1 cut(s)	480
EcoO109I	RGGNCCY	2 cut(s)	340, 2269
EcoRI	GAATTC	2 cut(s)	1148, 2638
EcoRII	CCWGG	4 cut(s)	342, 686, 933, 2712
EcoRV	GATATC	1 cut(s)	2443
EcoT14I	CCWWGG	4 cut(s)	439, 858, 2063, 2512
EcoT22I	ATGCAT	3 cut(s)	955, 1060, 1192
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	4 cut(s)	439, 858, 2063, 2512
FalI	AAGNNNNNCTT	4 cut(s)	1830, 1862, 2724, 2756
FaqI	GGGAC	4 cut(s)	80, 631, 877, 2282
FauI	CCCGC	2 cut(s)	79, 414
FauNDI	CATATG	3 cut(s)	1039, 1957, 3039
FbaI	TGATCA	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	1764
Fnu4HI	GCNGC	9 cut(s)	51, 654, 807, 810, 996, 1134, 1260, 2925, 2928
FokI	GGATG	6 cut(s)	764, 950, 1035, 2051, 2156, 2647
Fsp4HI	GCNGC	9 cut(s)	51, 654, 807, 810, 996, 1134, 1260, 2925, 2928
FspBI	CTAG	5 cut(s)	440, 1545, 1664, 2385, 2990
GlaI	GCGC	3 cut(s)	181, 1367, 2959
GluI	GCNGC	9 cut(s)	51, 654, 807, 810, 996, 1134, 1260, 2925, 2928
GsuI	CTGGAG	3 cut(s)	687, 1194, 2696
HaeII	RGCGCY	2 cut(s)	183, 2961
HapII	CCGG	5 cut(s)	98, 354, 601, 1068, 1088
HgaI	GACGC	1 cut(s)	2552
HhaI	GCGC	3 cut(s)	182, 1368, 2960
Hin1I	GRCGYC	3 cut(s)	141, 180, 2563
Hin6I	GCGC	3 cut(s)	180, 1366, 2958
HinP1I	GCGC	3 cut(s)	180, 1366, 2958
HincII	GTYRAC	3 cut(s)	359, 931, 2965
HindII	GTYRAC	3 cut(s)	359, 931, 2965
HindIII	AAGCTT	3 cut(s)	525, 1450, 1844
HpaII	CCGG	5 cut(s)	98, 354, 601, 1068, 1088
HphI	GGTGA	4 cut(s)	729, 2005, 2744, 2959
Hpy99I	CGWCG	6 cut(s)	85, 140, 143, 146, 398, 2568
HpyAV	CCTTC	9 cut(s)	1769, 1832, 2492, 2543, 2615, 2617, 2682, 2750, 2805
HpyCH4III	ACNGT	8 cut(s)	42, 160, 1389, 1534, 1681, 1981, 2017, 2476
HpyCH4IV	ACGT	6 cut(s)	111, 141, 174, 216, 273, 1104
HpyF10VI	GCNNNNNNNGC	6 cut(s)	524, 815, 992, 1268, 1952, 2574
HpySE526I	ACGT	6 cut(s)	111, 141, 174, 216, 273, 1104
Hsp92I	GRCGYC	3 cut(s)	141, 180, 2563
HspAI	GCGC	3 cut(s)	180, 1366, 2958
KasI	GGCGCC	1 cut(s)	179
KpnI	GGTACC	1 cut(s)	1685
Ksp22I	TGATCA	1 cut(s)	427
KspI	CCGCGG	1 cut(s)	2928
LmnI	GCTCC	5 cut(s)	356, 1175, 2101, 2421, 2596
Lsp1109I	GCAGC	6 cut(s)	640, 796, 818, 1007, 1145, 1246
MabI	ACCWGGT	1 cut(s)	342
MaeI	CTAG	5 cut(s)	440, 1545, 1664, 2385, 2990
MaeII	ACGT	6 cut(s)	111, 141, 174, 216, 273, 1104
MaeIII	GTNAC	9 cut(s)	735, 829, 1100, 1121, 1528, 1607, 1675, 1876, 2842
MfeI	CAATTG	1 cut(s)	2289
MflI	RGATCY	3 cut(s)	1506, 1936, 2381
MhlI	GDGCHC	2 cut(s)	1394, 2593
MlsI	TGGCCA	2 cut(s)	510, 2577
MluNI	TGGCCA	2 cut(s)	510, 2577
Mly113I	GGCGCC	1 cut(s)	180
MlyI	GAGTC	5 cut(s)	218, 469, 798, 1349, 2945
MmeI	TCCRAC	3 cut(s)	1125, 1463, 2524
Mox20I	TGGCCA	2 cut(s)	510, 2577
Mph1103I	ATGCAT	3 cut(s)	955, 1060, 1192
MscI	TGGCCA	2 cut(s)	510, 2577
MseI	TTAA	8 cut(s)	153, 1095, 1601, 1817, 1860, 2238, 2313, 2504
MslI	CAYNNNNRTG	5 cut(s)	386, 1053, 1224, 2018, 3042
Msp20I	TGGCCA	2 cut(s)	510, 2577
MspA1I	CMGCKG	4 cut(s)	809, 1883, 2573, 2927
MspCI	CTTAAG	1 cut(s)	152
MspI	CCGG	5 cut(s)	98, 354, 601, 1068, 1088
MspR9I	CCNGG	5 cut(s)	98, 344, 688, 935, 2714
MunI	CAATTG	1 cut(s)	2289
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	4 cut(s)	344, 688, 935, 2714
MvnI	CGCG	2 cut(s)	2229, 2927
MwoI	GCNNNNNNNGC	6 cut(s)	524, 815, 992, 1268, 1952, 2574
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	98
NcoI	CCATGG	2 cut(s)	858, 2063
NdeI	CATATG	3 cut(s)	1039, 1957, 3039
NheI	GCTAGC	1 cut(s)	1663
NlaIV	GGNNCC	6 cut(s)	123, 181, 1508, 1683, 2270, 3049
NmuCI	GTSAC	4 cut(s)	735, 829, 1528, 2842
NruI	TCGCGA	1 cut(s)	2229
NsiI	ATGCAT	3 cut(s)	955, 1060, 1192
NspI	RCATGY	3 cut(s)	385, 1256, 2108
PaeI	GCATGC	1 cut(s)	2108
PaeR7I	CTCGAG	1 cut(s)	480
PagI	TCATGA	2 cut(s)	1222, 2434
PceI	AGGCCT	1 cut(s)	1946
PcsI	WCGNNNNNNNCGW	1 cut(s)	2766
PctI	GAATGC	1 cut(s)	284
PfeI	GAWTC	7 cut(s)	256, 557, 1169, 1541, 2216, 2245, 2532
PflFI	GACNNNGTC	3 cut(s)	140, 227, 344
PflMI	CCANNNNNTGG	4 cut(s)	1355, 1659, 1691, 2294
PfoI	TCCNGGA	2 cut(s)	96, 2712
PinAI	ACCGGT	1 cut(s)	1067
PkrI	GCNGC	9 cut(s)	52, 655, 808, 811, 997, 1135, 1261, 2926, 2929
PleI	GAGTC	5 cut(s)	218, 469, 797, 1348, 2944
PluTI	GGCGCC	1 cut(s)	183
PpsI	GAGTC	5 cut(s)	218, 469, 797, 1348, 2944
Ppu21I	YACGTR	1 cut(s)	175
PpuMI	RGGWCCY	2 cut(s)	340, 2269
PshBI	ATTAAT	1 cut(s)	2313
PsiI	TTATAA	1 cut(s)	1988
Psp1406I	AACGTT	1 cut(s)	111
Psp5II	RGGWCCY	2 cut(s)	340, 2269
Psp6I	CCWGG	4 cut(s)	342, 686, 933, 2712
PspGI	CCWGG	4 cut(s)	342, 686, 933, 2712
PspN4I	GGNNCC	6 cut(s)	123, 181, 1508, 1683, 2270, 3049
PspPI	GGNCC	7 cut(s)	163, 340, 855, 1065, 2027, 2129, 2269
PspPPI	RGGWCCY	2 cut(s)	340, 2269
PspXI	VCTCGAGB	1 cut(s)	480
PstI	CTGCAG	1 cut(s)	1837
PstNI	CAGNNNCTG	2 cut(s)	46, 1430
PsuI	RGATCY	3 cut(s)	1506, 1936, 2381
PsyI	GACNNNGTC	3 cut(s)	140, 227, 344
PvuII	CAGCTG	2 cut(s)	809, 2573
RruI	TCGCGA	1 cut(s)	2229
RsaI	GTAC	5 cut(s)	65, 170, 210, 1240, 1683
RsaNI	GTAC	5 cut(s)	64, 169, 209, 1239, 1682
RseI	CAYNNNNRTG	5 cut(s)	386, 1053, 1224, 2018, 3042
SacII	CCGCGG	1 cut(s)	2928
SaqAI	TTAA	8 cut(s)	153, 1095, 1601, 1817, 1860, 2238, 2313, 2504
SatI	GCNGC	9 cut(s)	51, 654, 807, 810, 996, 1134, 1260, 2925, 2928
Sau96I	GGNCC	7 cut(s)	163, 340, 855, 1065, 2027, 2129, 2269
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	5 cut(s)	218, 469, 798, 1349, 2945
ScrFI	CCNGG	5 cut(s)	98, 344, 688, 935, 2714
SduI	GDGCHC	2 cut(s)	1394, 2593
SexAI	ACCWGGT	1 cut(s)	342
SfcI	CTRYAG	2 cut(s)	1833, 2343
SfoI	GGCGCC	1 cut(s)	181
Sfr274I	CTCGAG	1 cut(s)	480
Sfr303I	CCGCGG	1 cut(s)	2928
SgrBI	CCGCGG	1 cut(s)	2928
SinI	GGWCC	5 cut(s)	163, 340, 855, 1065, 2269
SlaI	CTCGAG	1 cut(s)	480
SmiMI	CAYNNNNRTG	5 cut(s)	386, 1053, 1224, 2018, 3042
SmlI	CTYRAG	5 cut(s)	152, 362, 480, 620, 1714
SmoI	CTYRAG	5 cut(s)	152, 362, 480, 620, 1714
SphI	GCATGC	1 cut(s)	2108
SseBI	AGGCCT	1 cut(s)	1946
SsiI	CCGC	8 cut(s)	51, 86, 407, 1043, 1883, 2242, 2925, 2927
SspDI	GGCGCC	1 cut(s)	179
SspI	AATATT	1 cut(s)	1658
SspMI	CTAG	5 cut(s)	440, 1545, 1664, 2385, 2990
StuI	AGGCCT	1 cut(s)	1946
StyD4I	CCNGG	5 cut(s)	96, 342, 686, 933, 2712
StyI	CCWWGG	4 cut(s)	439, 858, 2063, 2512
TaaI	ACNGT	8 cut(s)	42, 160, 1389, 1534, 1681, 1981, 2017, 2476
TaiI	ACGT	6 cut(s)	114, 144, 177, 219, 276, 1107
TaqI	TCGA	8 cut(s)	196, 481, 555, 574, 1741, 1966, 2248, 2535
TaqII	GACCGA	1 cut(s)	1984
TatI	WGTACW	3 cut(s)	63, 168, 208
TauI	GCSGC	3 cut(s)	53, 2927, 2930
TfiI	GAWTC	7 cut(s)	256, 557, 1169, 1541, 2216, 2245, 2532
Tru1I	TTAA	8 cut(s)	153, 1095, 1601, 1817, 1860, 2238, 2313, 2504
Tru9I	TTAA	8 cut(s)	153, 1095, 1601, 1817, 1860, 2238, 2313, 2504
TscAI	CASTG	5 cut(s)	679, 985, 1394, 1537, 2379
TseFI	GTSAC	4 cut(s)	735, 829, 1528, 2842
TseI	GCWGC	6 cut(s)	653, 806, 809, 995, 1133, 1259
Tsp45I	GTSAC	4 cut(s)	735, 829, 1528, 2842
TspGWI	ACGGA	1 cut(s)	1519
TspRI	CASTG	5 cut(s)	679, 985, 1394, 1537, 2379
Tth111I	GACNNNGTC	3 cut(s)	140, 227, 344
Van91I	CCANNNNNTGG	4 cut(s)	1355, 1659, 1691, 2294
Vha464I	CTTAAG	1 cut(s)	152
VpaK11BI	GGWCC	5 cut(s)	163, 340, 855, 1065, 2269
VspI	ATTAAT	1 cut(s)	2313
XapI	RAATTY	7 cut(s)	889, 914, 1110, 1148, 1379, 2322, 2638
XceI	RCATGY	3 cut(s)	385, 1256, 2108
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1059, 1656, 2291
XhoI	CTCGAG	1 cut(s)	480
XmaJI	CCTAGG	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	1764
XspI	CTAG	5 cut(s)	440, 1545, 1664, 2385, 2990
ZraI	GACGTC	1 cut(s)	142
ZrmI	AGTACT	1 cut(s)	170
Zsp2I	ATGCAT	3 cut(s)	955, 1060, 1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.