Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

86139419 .. 86139676

Gene Structure 258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54022

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGAGCAATCATCCGCCATCAAGTGTCCATCAATATCTTATCATCTAGTTGGAACAAAAAAAATTCAACAAGAACTTGCTAAGCCTAATGTTCTCGAGAGGTTCCTTGATGATAAAGAAGACATTGCAAGATTGCGGAAATGCTTTGCAAGATTGTGGAGTTTGGACGACTCAGAAATTGTTAGAAAAAGCAATGGAAAAGCCAGAGTTATTTGTCATGAAGCCCCAAAGAGAAGGCGGAGGGAACAATATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

85

Amino Acids

10.0

Weight (kDa)

9.67

Isoelectric Point (pI)

66.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSH_synth_ATP	PF03917	18 - 67	2.6e-15	Eukaryotic glutathione synthase, ATP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	15, 136, 238
AcsI	RAATTY	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	63
AvaI	CYCGRG	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	126
BccI	CCATC	2 cut(s)	26, 37
BfaI	CTAG	1 cut(s)	47
BlpI	GCTNAGC	1 cut(s)	81
BmeT110I	CYCGRG	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	81
Bse3DI	GCAATG	2 cut(s)	123, 199
BseGI	GGATG	1 cut(s)	11
BseMI	GCAATG	2 cut(s)	123, 199
BseMII	CTCAG	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	95
Bsp1720I	GCTNAGC	1 cut(s)	81
BspACI	CCGC	3 cut(s)	15, 136, 238
BspCNI	CTCAG	1 cut(s)	185
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	104
BsrDI	GCAATG	2 cut(s)	123, 199
BstDEI	CTNAG	2 cut(s)	81, 172
BstF5I	GGATG	1 cut(s)	11
BstV2I	GAAGAC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	11
CciI	TCATGA	1 cut(s)	217
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	3 cut(s)	85, 203, 224
CviKI_1	RGCY	3 cut(s)	85, 203, 224
DdeI	CTNAG	2 cut(s)	81, 172
EciI	GGCGGA	2 cut(s)	4, 253
Eco88I	CYCGRG	1 cut(s)	95
FaeI	CATG	1 cut(s)	221
FaiI	YATR	2 cut(s)	219, 256
FatI	CATG	1 cut(s)	217
FspBI	CTAG	1 cut(s)	47
Hin1II	CATG	1 cut(s)	221
HinfI	GANTC	1 cut(s)	170
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	3 cut(s)	95, 97, 218
HpyAV	CCTTC	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	128, 149
HpyF3I	CTNAG	2 cut(s)	81, 172
Hsp92II	CATG	1 cut(s)	221
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	1 cut(s)	217
MaeI	CTAG	1 cut(s)	47
MboII	GAAGA	1 cut(s)	131
MluCI	AATT	2 cut(s)	63, 177
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	2 cut(s)	93, 234
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	1 cut(s)	104
PaeR7I	CTCGAG	1 cut(s)	95
PagI	TCATGA	1 cut(s)	217
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	104
SchI	GAGTC	1 cut(s)	164
SetI	ASST	1 cut(s)	104
Sfr274I	CTCGAG	1 cut(s)	95
SlaI	CTCGAG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	63, 177
SsiI	CCGC	3 cut(s)	15, 136, 238
SspMI	CTAG	1 cut(s)	47
TaqI	TCGA	1 cut(s)	96
TasI	AATT	2 cut(s)	63, 177
TspDTI	ATGAA	1 cut(s)	234
XapI	RAATTY	1 cut(s)	63
XhoI	CTCGAG	1 cut(s)	95
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.