Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

86139695 .. 86139889

Gene Structure 195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54023

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGTATGACCAACATTGGCTCTCTACTTCATTGAAGCAAAAATATAACATATCAACTCTTCGAAAAACTTTGGCTGAAATTGACGCTGAGGCGGAGTTTCTACCCGATGGAACATTTGTTGTTGGCGGCCAAGTAATTGGAATAGTTTATTTCCGAGCTGGGTATACCCCAAATGATTATTCTTCTGAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

64

Amino Acids

7.22

Weight (kDa)

4.75

Isoelectric Point (pI)

38.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSH_synthase	PF03199	1 - 63	3.8e-13	Eukaryotic glutathione synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	164
AciI	CCGC	2 cut(s)	92, 126
AcoI	YGGCCR	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	34
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AluBI	AGCT	1 cut(s)	158
AluI	AGCT	1 cut(s)	158
AoxI	GGCC	1 cut(s)	127
AsuII	TTCGAA	1 cut(s)	61
BbvCI	CCTCAGC	1 cut(s)	87
BccI	CCATC	1 cut(s)	101
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	78
BseYI	CCCAGC	1 cut(s)	158
BshFI	GGCC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	129
Bsp119I	TTCGAA	1 cut(s)	61
BspACI	CCGC	2 cut(s)	92, 126
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	79
BspT104I	TTCGAA	1 cut(s)	61
BssNAI	GTATAC	1 cut(s)	165
Bst1107I	GTATAC	1 cut(s)	165
Bst6I	CTCTTC	1 cut(s)	63
BstBI	TTCGAA	1 cut(s)	61
BstDEI	CTNAG	1 cut(s)	87
BstXI	CCANNNNNNTGG	1 cut(s)	137
BstZ17I	GTATAC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	129
CseI	GACGC	1 cut(s)	92
CviJI	RGCY	4 cut(s)	19, 74, 129, 158
CviKI_1	RGCY	4 cut(s)	19, 74, 129, 158
DdeI	CTNAG	1 cut(s)	87
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
EciI	GGCGGA	1 cut(s)	107
FaiI	YATR	5 cut(s)	6, 45, 50, 165, 193
FblI	GTMKAC	1 cut(s)	164
Fnu4HI	GCNGC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	127
GluI	GCNGC	1 cut(s)	127
GsaI	CCCAGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	129
HgaI	GACGC	1 cut(s)	92
HinfI	GANTC	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	2 cut(s)	155, 187
Hpy8I	GTNNAC	1 cut(s)	165
HpyF3I	CTNAG	1 cut(s)	87
LpnPI	CCDG	1 cut(s)	144
MboII	GAAGA	2 cut(s)	50, 174
MluCI	AATT	2 cut(s)	78, 135
MnlI	CCTC	1 cut(s)	82
NspV	TTCGAA	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	158
SatI	GCNGC	1 cut(s)	127
SetI	ASST	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	61
SgeI	CNNG	4 cut(s)	116, 143, 167, 171
Sse9I	AATT	2 cut(s)	78, 135
SsiI	CCGC	2 cut(s)	92, 126
TaqI	TCGA	1 cut(s)	61
TasI	AATT	2 cut(s)	78, 135
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.