Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

50905592 .. 50911084

Gene Structure 5493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00430810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGGTGCTTCACATTCCATCCCTCTCACCCCTGATACCATCACCCTTCTTCACTTAAATCCCAGAACAACCTTGTTTTCTCAGTCAACACAGTCGAGATTACAAAACCCAGTATTCAAATTAAACCCCACCAACCAAATCTTGAAGGCCCAGTTGAAGACCATGTCTCAACCCTCTCAAGTTGTGCCTGTCAATGGTGGCAACGTTGTAGTTAGGGAGACCCAAGATGAAAGTAGCATAAGGCCAATTAATGTTGATGGGATTGATCAGGAAGTGGTTGACAAGATGGTATATGATGCTCTTGTTTGGAGCTCAATTCATGGCCTTGTTGTTGGTGACAAGTCTGTTCCGAGGTCATCAACAGTACCTGGAGTAGGATTGGTACACGCCCCGTTCGCTTTACTTCCGATGCCGTTTCCAGAAACTCAGTTGAATCAAGCGAATGAGTTAGCCCCCATATTCAATGAACTTGTTGATCGAGTGAGTTTGGATGCGGAATTCCTGCAGGATTCATTGTCCAGAACGAAGAAAGCAGATCCTTTTACAGCTAGACTTCTAGATATTCATGCCAAGATGCTAGAGATTAACAAGAAAGAGGAGATACGCTTGGGTTTACATCGGTCAGATTATATGCTTGATGAACAAACTAAATTACTCCTTCAAATAGAGATGAACACAATTTCATCTTCATTTGCAGGCCTCAGTGGTCTTGTCGGCAAACTTCACAGGAGCTTACTTAGTAACTATGGAGAATTTCTTGGATTAGATTCCAAAAGGATTCCTGATAATGCTGCAGTCAGTCAGTTTTCAATGGCTTTGGCTAGAGCTTGGACTGAATACAACAACCCAAGGTTCCTTGACGATAAAGAGGACATTGCAAAATTACGGAAATGCTTTGCAGGATTGTGGAGTTTGGACAACTCGGATATTGTCAAAAAAGCAATAGAGAAGCCAGAGTTATTTGTCATGAAGCCCCAAAGAGAAGGCGGAGGGAACAATATCTATGGCAATGACGTTAGGGAGACCCTCATTAAATTGCAGAAGGAAGGGTCAGAAGCAGAGGCTGCTTATATCCTGATGCAGAGGTTATTCCCTGCTGTTTCTACCACATTCTTGATGCGAGAGGGCATTTGTTATAAAGACGATACTATATCTGAGCTTGGGGTATATGGTGCCTACTTGAGGAACAACGAGAAAGTGATTTTGAATGACCAGTGTGGCTACCTGATGCGAACCAAGGTTTCGTCATCAGATGAAGGTGGAGTTGCCGCTGGATTTGCGGTCTTAGATAGTTTATATTTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

435

Amino Acids

48.29

Weight (kDa)

5.64

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSH_synth_ATP	PF03917	91 - 283	1.9e-53	Eukaryotic glutathione synthase, ATP binding domain
GSH_synth_ATP	PF03917	284 - 434	8.2e-58	Eukaryotic glutathione synthase, ATP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1137
AccB1I	GGYRCC	1 cut(s)	1172
AciI	CCGC	4 cut(s)	494, 987, 1269, 1280
AclI	AACGTT	1 cut(s)	204
AclWI	GGATC	1 cut(s)	530
AcsI	RAATTY	2 cut(s)	497, 752
AfaI	GTAC	2 cut(s)	366, 384
AfiI	CCNNNNNNNGG	3 cut(s)	194, 374, 1182
AgsI	TTSAA	8 cut(s)	118, 145, 157, 433, 463, 662, 810, 1207
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	5 cut(s)	312, 548, 732, 827, 1159
AluI	AGCT	5 cut(s)	312, 548, 732, 827, 1159
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	3 cut(s)	171, 212, 1016
AlwI	GGATC	1 cut(s)	530
AlwNI	CAGNNNCTG	2 cut(s)	368, 1064
AoxI	GGCC	4 cut(s)	147, 242, 322, 697
ApeKI	GCWGC	2 cut(s)	791, 1064
ApoI	RAATTY	2 cut(s)	497, 752
AseI	ATTAAT	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	3 cut(s)	19, 34, 347
BanI	GGYRCC	1 cut(s)	1172
BanII	GRGCYC	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	778, 1051
BccI	CCATC	4 cut(s)	26, 47, 251, 280
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	369
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	3 cut(s)	171, 212, 1016
BfaI	CTAG	4 cut(s)	549, 557, 578, 822
BfmI	CTRYAG	2 cut(s)	503, 792
BisI	GCNGC	3 cut(s)	792, 1065, 1269
BlsI	GCNGC	3 cut(s)	793, 1066, 1270
Bme1390I	CCNGG	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	2 cut(s)	854, 1174
BmrFI	CCNGG	1 cut(s)	369
BmrI	ACTGGG	2 cut(s)	104, 145
BmsI	GCATC	7 cut(s)	286, 399, 481, 564, 1068, 1107, 1218
BmuI	ACTGGG	2 cut(s)	104, 145
BpiI	GAAGAC	1 cut(s)	164
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	2 cut(s)	162, 1201
BsaI	GGTCTC	2 cut(s)	212, 1016
BsaJI	CCNNGG	3 cut(s)	350, 848, 1236
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 374, 1182
Bse1I	ACTGG	3 cut(s)	110, 151, 1213
Bse3DI	GCAATG	2 cut(s)	873, 1015
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	3 cut(s)	350, 848, 1236
BseGI	GGATG	2 cut(s)	18, 496
BseLI	CCNNNNNNNGG	3 cut(s)	194, 374, 1182
BseMI	GCAATG	2 cut(s)	873, 1015
BseMII	CTCAG	4 cut(s)	95, 440, 715, 1146
BseNI	ACTGG	3 cut(s)	110, 151, 1213
BseRI	GAGGAG	1 cut(s)	611
BseXI	GCAGC	2 cut(s)	778, 1051
BshFI	GGCC	4 cut(s)	149, 244, 324, 699
BshNI	GGYRCC	1 cut(s)	1172
BsiHKAI	GWGCWC	1 cut(s)	314
BslI	CCNNNNNNNGG	3 cut(s)	194, 374, 1182
BsmAI	GTCTC	3 cut(s)	171, 212, 1016
BsnI	GGCC	4 cut(s)	149, 244, 324, 699
Bso31I	GGTCTC	2 cut(s)	212, 1016
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	3 cut(s)	265, 475, 535
BspACI	CCGC	4 cut(s)	494, 987, 1269, 1280
BspANI	GGCC	4 cut(s)	149, 244, 324, 699
BspCNI	CTCAG	4 cut(s)	94, 439, 714, 1147
BspHI	TCATGA	1 cut(s)	966
BspLI	GGNNCC	2 cut(s)	854, 1174
BspMAI	CTGCAG	2 cut(s)	507, 796
BspPI	GGATC	1 cut(s)	530
BspT107I	GGYRCC	1 cut(s)	1172
BspTNI	GGTCTC	2 cut(s)	212, 1016
BsrDI	GCAATG	2 cut(s)	873, 1015
BsrI	ACTGG	3 cut(s)	110, 151, 1213
BssECI	CCNNGG	3 cut(s)	350, 848, 1236
BssMI	GATC	3 cut(s)	265, 475, 535
BssT1I	CCWWGG	2 cut(s)	848, 1236
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	2 cut(s)	93, 364
BstAPI	GCANNNNNTGC	1 cut(s)	1064
BstC8I	GCNNGC	1 cut(s)	697
BstDEI	CTNAG	6 cut(s)	81, 426, 701, 737, 1155, 1285
BstENI	CCTNNNNNAGG	2 cut(s)	372, 1180
BstF5I	GGATG	2 cut(s)	18, 496
BstKTI	GATC	3 cut(s)	268, 478, 538
BstMAI	GTCTC	3 cut(s)	171, 212, 1016
BstMBI	GATC	3 cut(s)	265, 475, 535
BstMWI	GCNNNNNNNGC	3 cut(s)	395, 1064, 1277
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	367
BstSFI	CTRYAG	2 cut(s)	503, 792
BstV1I	GCAGC	2 cut(s)	778, 1051
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BsuRI	GGCC	4 cut(s)	149, 244, 324, 699
BtsCI	GGATG	2 cut(s)	18, 496
BtsIMutI	CAGTG	2 cut(s)	709, 1220
Cac8I	GCNNGC	1 cut(s)	697
CaiI	CAGNNNCTG	2 cut(s)	368, 1064
CciI	TCATGA	1 cut(s)	966
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	365, 383
CviAII	CATG	4 cut(s)	163, 320, 566, 967
CviQI	GTAC	2 cut(s)	365, 383
DdeI	CTNAG	6 cut(s)	81, 426, 701, 737, 1155, 1285
DpnI	GATC	3 cut(s)	267, 477, 537
DpnII	GATC	3 cut(s)	265, 475, 535
EciI	GGCGGA	1 cut(s)	1002
Ecl136II	GAGCTC	1 cut(s)	312
Eco130I	CCWWGG	2 cut(s)	848, 1236
Eco147I	AGGCCT	1 cut(s)	699
Eco24I	GRGCYC	1 cut(s)	314
Eco31I	GGTCTC	2 cut(s)	212, 1016
Eco53kI	GAGCTC	1 cut(s)	312
EcoICRI	GAGCTC	1 cut(s)	312
EcoNI	CCTNNNNNAGG	2 cut(s)	372, 1180
EcoRI	GAATTC	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	2 cut(s)	848, 1236
EcoT38I	GRGCYC	1 cut(s)	314
ErhI	CCWWGG	2 cut(s)	848, 1236
FaeI	CATG	4 cut(s)	166, 323, 569, 970
FatI	CATG	4 cut(s)	162, 319, 565, 966
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	3 cut(s)	792, 1065, 1269
FokI	GGATG	2 cut(s)	5, 503
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	3 cut(s)	792, 1065, 1269
FspBI	CTAG	4 cut(s)	549, 557, 578, 822
GluI	GCNGC	3 cut(s)	792, 1065, 1269
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	4 cut(s)	149, 244, 324, 699
Hin1II	CATG	4 cut(s)	166, 323, 569, 970
HincII	GTYRAC	2 cut(s)	87, 280
HindII	GTYRAC	2 cut(s)	87, 280
HinfI	GANTC	4 cut(s)	433, 509, 767, 778
HphI	GGTGA	3 cut(s)	19, 34, 347
Hpy166II	GTNNAC	4 cut(s)	87, 280, 385, 614
Hpy188I	TCNGA	7 cut(s)	351, 408, 625, 925, 1054, 1156, 1252
Hpy8I	GTNNAC	4 cut(s)	87, 280, 385, 614
HpyAV	CCTTC	7 cut(s)	56, 139, 668, 977, 1036, 1040, 1250
HpyCH4III	ACNGT	2 cut(s)	93, 364
HpyCH4IV	ACGT	2 cut(s)	204, 1014
HpyCH4V	TGCA	7 cut(s)	505, 695, 794, 878, 899, 1039, 1081
HpyF10VI	GCNNNNNNNGC	3 cut(s)	395, 1064, 1277
HpyF3I	CTNAG	6 cut(s)	81, 426, 701, 737, 1155, 1285
HpySE526I	ACGT	2 cut(s)	204, 1014
Hsp92II	CATG	4 cut(s)	166, 323, 569, 970
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	265, 475, 535
LmnI	GCTCC	2 cut(s)	309, 729
Lsp1109I	GCAGC	2 cut(s)	778, 1051
LweI	GCATC	7 cut(s)	286, 399, 481, 564, 1068, 1107, 1218
MaeI	CTAG	4 cut(s)	549, 557, 578, 822
MaeII	ACGT	2 cut(s)	204, 1014
MaeIII	GTNAC	2 cut(s)	335, 740
MalI	GATC	3 cut(s)	267, 477, 537
MboI	GATC	3 cut(s)	265, 475, 535
MboII	GAAGA	4 cut(s)	41, 169, 538, 678
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	9 cut(s)	119, 246, 315, 497, 650, 678, 752, 881, 1034
MseI	TTAA	6 cut(s)	56, 122, 249, 585, 1032, 1301
MspA1I	CMGCKG	1 cut(s)	1271
MspR9I	CCNGG	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	369
MwoI	GCNNNNNNNGC	3 cut(s)	395, 1064, 1277
NdeII	GATC	3 cut(s)	265, 475, 535
NlaIII	CATG	4 cut(s)	166, 323, 569, 970
NlaIV	GGNNCC	2 cut(s)	854, 1174
NmuCI	GTSAC	1 cut(s)	335
PagI	TCATGA	1 cut(s)	966
PceI	AGGCCT	1 cut(s)	699
PfeI	GAWTC	4 cut(s)	433, 509, 767, 778
PflFI	GACNNNGTC	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	793, 1066, 1270
PshBI	ATTAAT	1 cut(s)	249
PsiI	TTATAA	1 cut(s)	1137
Psp124BI	GAGCTC	1 cut(s)	314
Psp1406I	AACGTT	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	2 cut(s)	854, 1174
PspPI	GGNCC	1 cut(s)	148
PstI	CTGCAG	2 cut(s)	507, 796
PstNI	CAGNNNCTG	2 cut(s)	368, 1064
PsuI	RGATCY	1 cut(s)	535
PsyI	GACNNNGTC	1 cut(s)	163
RsaI	GTAC	2 cut(s)	366, 384
RsaNI	GTAC	2 cut(s)	365, 383
SacI	GAGCTC	1 cut(s)	314
SaqAI	TTAA	6 cut(s)	56, 122, 249, 585, 1032, 1301
SatI	GCNGC	3 cut(s)	792, 1065, 1269
Sau3AI	GATC	3 cut(s)	265, 475, 535
Sau96I	GGNCC	1 cut(s)	148
SbfI	CCTGCAGG	1 cut(s)	507
ScrFI	CCNGG	1 cut(s)	369
SdaI	CCTGCAGG	1 cut(s)	507
SduI	GDGCHC	1 cut(s)	314
SfaNI	GCATC	7 cut(s)	286, 399, 481, 564, 1068, 1107, 1218
SfcI	CTRYAG	2 cut(s)	503, 792
SmlI	CTYRAG	2 cut(s)	177, 1180
SmoI	CTYRAG	2 cut(s)	177, 1180
Sse8387I	CCTGCAGG	1 cut(s)	507
Sse9I	AATT	9 cut(s)	119, 246, 315, 497, 650, 678, 752, 881, 1034
SseBI	AGGCCT	1 cut(s)	699
SsiI	CCGC	4 cut(s)	494, 987, 1269, 1280
SspMI	CTAG	4 cut(s)	549, 557, 578, 822
SstI	GAGCTC	1 cut(s)	314
StuI	AGGCCT	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	367
StyI	CCWWGG	2 cut(s)	848, 1236
TaaI	ACNGT	2 cut(s)	93, 364
TaiI	ACGT	2 cut(s)	207, 1017
TaqI	TCGA	2 cut(s)	95, 478
TaqII	GACCGA	1 cut(s)	609
TasI	AATT	9 cut(s)	119, 246, 315, 497, 650, 678, 752, 881, 1034
TauI	GCSGC	1 cut(s)	1271
TfiI	GAWTC	4 cut(s)	433, 509, 767, 778
Tru1I	TTAA	6 cut(s)	56, 122, 249, 585, 1032, 1301
Tru9I	TTAA	6 cut(s)	56, 122, 249, 585, 1032, 1301
TscAI	CASTG	2 cut(s)	709, 1220
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	2 cut(s)	791, 1064
Tsp45I	GTSAC	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	901
TspRI	CASTG	2 cut(s)	709, 1220
Tth111I	GACNNNGTC	1 cut(s)	163
VspI	ATTAAT	1 cut(s)	249
XagI	CCTNNNNNAGG	2 cut(s)	372, 1180
XapI	RAATTY	2 cut(s)	497, 752
XbaI	TCTAGA	1 cut(s)	556
XspI	CTAG	4 cut(s)	549, 557, 578, 822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.