Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

86392851 .. 86393204

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG640800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCGTTTCCAGAAAGTCAGTTGAATAAAGCAAATGAGTTGGCTCCCATATTTAATGAACTTGTTGATCGAGTGAGTTTGGATATGAGATTCCTGCAGGATTCACAGTCCAGAATGAAGAAAGCAGATCCTTTTACATCTATACTTCTAGATATTCATGCCAAGATGCTAGAGAATAACAAGAAAGAGGAGATACGCTTGGGTTTGCATCGCTCAAATTGTATGCTTGATGAACAGTCTAAATTACTCCTTCAGATAGAGATGAACACAATTTCGTCTTCATTTGCAGGGCTGGTCTTGTCTGCCAACTTCACAGGAGCTTACTTGGTAACTATGGAGAATTTCTTAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

117

Amino Acids

13.34

Weight (kDa)

5.14

Isoelectric Point (pI)

62.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSH_synth_ATP	PF03917	2 - 103	2.7e-28	Eukaryotic glutathione synthase, ATP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
AlwI	GGATC	1 cut(s)	122
ApoI	RAATTY	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	270
BfaI	CTAG	2 cut(s)	149, 170
BfmI	CTRYAG	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	45
BmsI	GCATC	2 cut(s)	156, 217
BpiI	GAAGAC	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	203
Bsp143I	GATC	2 cut(s)	67, 127
BspLI	GGNNCC	1 cut(s)	45
BspMAI	CTGCAG	1 cut(s)	99
BspPI	GGATC	1 cut(s)	122
BssMI	GATC	2 cut(s)	67, 127
Bst4CI	ACNGT	2 cut(s)	108, 237
BstDEI	CTNAG	1 cut(s)	346
BstKTI	GATC	2 cut(s)	70, 130
BstMBI	GATC	2 cut(s)	67, 127
BstSFI	CTRYAG	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BtgZI	GCGATG	1 cut(s)	194
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	3 cut(s)	44, 292, 320
CviKI_1	RGCY	3 cut(s)	44, 292, 320
DdeI	CTNAG	1 cut(s)	346
DpnI	GATC	2 cut(s)	69, 129
DpnII	GATC	2 cut(s)	67, 127
Eco57I	CTGAAG	1 cut(s)	236
FaeI	CATG	1 cut(s)	161
FaiI	YATR	6 cut(s)	50, 86, 143, 159, 224, 335
FatI	CATG	1 cut(s)	157
FspBI	CTAG	2 cut(s)	149, 170
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	2 cut(s)	90, 101
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	3 cut(s)	11, 111, 149
HpyAV	CCTTC	1 cut(s)	260
HpyCH4III	ACNGT	2 cut(s)	108, 237
HpyCH4V	TGCA	3 cut(s)	97, 208, 287
HpyF3I	CTNAG	1 cut(s)	346
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	67, 127
LmnI	GCTCC	2 cut(s)	49, 317
LpnPI	CCDG	7 cut(s)	24, 83, 107, 124, 273, 278, 300
LweI	GCATC	2 cut(s)	156, 217
MaeI	CTAG	2 cut(s)	149, 170
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	2 cut(s)	69, 129
MboI	GATC	2 cut(s)	67, 127
MboII	GAAGA	2 cut(s)	130, 270
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	4 cut(s)	217, 242, 270, 340
MnlI	CCTC	1 cut(s)	181
MseI	TTAA	1 cut(s)	54
NdeII	GATC	2 cut(s)	67, 127
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	90, 101
PspN4I	GGNNCC	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	67, 127
SbfI	CCTGCAGG	1 cut(s)	99
SdaI	CCTGCAGG	1 cut(s)	99
SetI	ASST	1 cut(s)	322
SfaNI	GCATC	2 cut(s)	156, 217
SfcI	CTRYAG	1 cut(s)	95
Sse8387I	CCTGCAGG	1 cut(s)	99
Sse9I	AATT	4 cut(s)	217, 242, 270, 340
SspMI	CTAG	2 cut(s)	149, 170
TaaI	ACNGT	2 cut(s)	108, 237
TaqI	TCGA	1 cut(s)	70
TasI	AATT	4 cut(s)	217, 242, 270, 340
TfiI	GAWTC	2 cut(s)	90, 101
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TspDTI	ATGAA	6 cut(s)	72, 131, 146, 246, 270, 278
XapI	RAATTY	1 cut(s)	340
XbaI	TCTAGA	1 cut(s)	148
XspI	CTAG	2 cut(s)	149, 170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.