Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

80793755 .. 80795421

Gene Structure 1667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G052890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAAAGATGCATGGGTGCTTCACTTTCCATTCCTCTCACCGCTGACACCATCACCCTTCTCCACTCAAATCCCAGTACTGCCTTATTTTCTCAATCAAGATTACAGAACCCAATACGTGTTCAAATTAAACCCCACTAACCAAATCTTCAAGGCCCAGTTGAAGGTCATGTCTCAACCCTCTCAAGTTTTGCCTGATGAAAGTAGCACAAGGCCAATTAATGTTGATGGGATTGATCAGGGACTGGTTGACAAGATGGTGTATGATGCTCTTGTTTGGAGCTCAATTCATGGCCTTATTGTTGGTGACAGGTATGTTCAAAGGTCATCAACAATACCTGGATTGAATCAAGGAAATGAGTTGGCTCCCATATTTAATGAACTTGTTGATCGAGTGAGTTTGGATACGAGATTCCTGCAGGATTCACTGTCCAGAATGAAGAAAGCAAATCCTTTTACATCTAGACTTCTAGATATTCATGCCAAGATGCTAGAGAATAACAAGAAAGAGGAGATACGCTTGGGATTCCTAATTAATAATGCTGCAATCAGTCAGTTTTCAGCGGCTTTGGCTAGAACTTGGACTAAATACAACAACCCTAGGGCCGCAATTCTATTTGTCGTTCAGGCTGAAGAATGCAACATGTATGACCAACATTGGCTCTCTACTTCATTGAAGCAAAAATATAACATATCAACTCTTCGAAAAACTTTGGCTGAAATTGACGTTGAGGCGGAGTTTCTACCCGATGGAACATTTGTTATCGAGTGGAGAGCTAGGTTGCTTATGGAGCAATCATCCGCCATCAAGTGTCCATCAATATCTTATCATCTAGTTGGAACAAAAAAAATTAAACAAGAACTTGCTAAGCCTAATGTTCTCGAGAGATTGCGGAAATGCTTTGCAAGATTGTGGAGTTTGGACGACTCAGAAATTGTTAGAAAAAGCAATGGAAAAGCCAGAATGCAGAGGTTATTCCCTCCTGTTTCTCACACATTCTTGATGCGAGAGGGAATTTGTTATAAAGACGATACTATATCTGAGCTTGGACTATATGTTGTCTACTTGAGGAACAACAAGAAAGTTTCATCATCAGATGAAGGTGGAGTTGCAGTTTTAGATAATCTATATTTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

379

Amino Acids

43.36

Weight (kDa)

9.05

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSH_synth_ATP	PF03917	116 - 176	4.7e-11	Eukaryotic glutathione synthase, ATP binding domain
GSH_synth_ATP	PF03917	178 - 317	3.2e-08	Eukaryotic glutathione synthase, ATP binding domain
GSH_synthase	PF03199	203 - 247	4.2e-08	Eukaryotic glutathione synthase
GSH_synthase	PF03199	256 - 279	1.8e-06	Eukaryotic glutathione synthase
GSH_synth_ATP	PF03917	322 - 370	9e-07	Eukaryotic glutathione synthase, ATP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1023
AccI	GTMKAC	1 cut(s)	1062
AciI	CCGC	6 cut(s)	41, 563, 606, 734, 801, 892
AcsI	RAATTY	1 cut(s)	1014
AcuI	CTGAAG	1 cut(s)	651
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	163
AflIII	ACRYGT	2 cut(s)	117, 642
AgsI	TTSAA	6 cut(s)	124, 151, 163, 320, 346, 676
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	3 cut(s)	282, 776, 1045
AluI	AGCT	3 cut(s)	282, 776, 1045
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	1 cut(s)	177
AlwNI	CAGNNNCTG	1 cut(s)	244
Ama87I	CYCGRG	1 cut(s)	881
AoxI	GGCC	4 cut(s)	153, 212, 292, 603
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	1 cut(s)	1014
AseI	ATTAAT	2 cut(s)	219, 534
AspA2I	CCTAGG	1 cut(s)	599
AspS9I	GGNCC	2 cut(s)	154, 603
AsuHPI	GGTGA	3 cut(s)	30, 45, 317
AsuII	TTCGAA	1 cut(s)	703
AvaI	CYCGRG	1 cut(s)	881
AvrII	CCTAGG	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	6 cut(s)	58, 221, 250, 743, 812, 823
BcgI	CGANNNNNNTGC	2 cut(s)	397, 431
BciT130I	CCWGG	1 cut(s)	339
BciVI	GTATCC	1 cut(s)	397
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	7 cut(s)	462, 470, 491, 573, 600, 777, 833
BfmI	CTRYAG	1 cut(s)	416
BfuI	GTATCC	1 cut(s)	397
BisI	GCNGC	3 cut(s)	543, 564, 606
BlnI	CCTAGG	1 cut(s)	599
BlpI	GCTNAGC	1 cut(s)	867
BlsI	GCNGC	3 cut(s)	544, 565, 607
BmcAI	AGTACT	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	339
BmeT110I	CYCGRG	1 cut(s)	881
BmgT120I	GGNCC	2 cut(s)	154, 603
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	1 cut(s)	339
BmrI	ACTGGG	2 cut(s)	68, 151
BmsI	GCATC	3 cut(s)	256, 477, 993
BmuI	ACTGGG	2 cut(s)	68, 151
Bpu1102I	GCTNAGC	1 cut(s)	867
Bpu14I	TTCGAA	1 cut(s)	703
BpuEI	CTTGAG	2 cut(s)	168, 1087
BsaAI	YACGTR	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	599
BsaXI	ACNNNNNCTCC	2 cut(s)	1098, 1128
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	3 cut(s)	74, 157, 249
Bse3DI	GCAATG	1 cut(s)	955
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	599
BseGI	GGATG	1 cut(s)	797
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	955
BseMII	CTCAG	2 cut(s)	942, 1032
BseNI	ACTGG	3 cut(s)	74, 157, 249
BseRI	GAGGAG	1 cut(s)	524
BseXI	GCAGC	1 cut(s)	529
BshFI	GGCC	4 cut(s)	155, 214, 294, 605
BsiHKAI	GWGCWC	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	881
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	177
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	2 cut(s)	641, 969
BsnI	GGCC	4 cut(s)	155, 214, 294, 605
BsoBI	CYCGRG	1 cut(s)	881
Bsp119I	TTCGAA	1 cut(s)	703
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	2 cut(s)	235, 388
Bsp1720I	GCTNAGC	1 cut(s)	867
BspACI	CCGC	6 cut(s)	41, 563, 606, 734, 801, 892
BspANI	GGCC	4 cut(s)	155, 214, 294, 605
BspCNI	CTCAG	2 cut(s)	941, 1033
BspLI	GGNNCC	1 cut(s)	366
BspMAI	CTGCAG	1 cut(s)	420
BspT104I	TTCGAA	1 cut(s)	703
BsrDI	GCAATG	1 cut(s)	955
BsrI	ACTGG	3 cut(s)	74, 157, 249
BssECI	CCNNGG	1 cut(s)	599
BssMI	GATC	2 cut(s)	235, 388
BssT1I	CCWWGG	1 cut(s)	599
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	429
Bst6I	CTCTTC	1 cut(s)	705
BstBAI	YACGTR	1 cut(s)	118
BstBI	TTCGAA	1 cut(s)	703
BstDEI	CTNAG	3 cut(s)	867, 928, 1041
BstF5I	GGATG	1 cut(s)	797
BstKTI	GATC	2 cut(s)	238, 391
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	2 cut(s)	235, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	569, 790
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	529
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	4 cut(s)	155, 214, 294, 605
BtsCI	GGATG	1 cut(s)	797
BtsIMutI	CAGTG	1 cut(s)	425
CaiI	CAGNNNCTG	1 cut(s)	244
Cfr13I	GGNCC	2 cut(s)	154, 603
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	5 cut(s)	12, 169, 290, 479, 643
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	3 cut(s)	867, 928, 1041
DpnI	GATC	2 cut(s)	237, 390
DpnII	GATC	2 cut(s)	235, 388
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
EciI	GGCGGA	2 cut(s)	749, 790
Ecl136II	GAGCTC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	599
Eco24I	GRGCYC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	881
EcoICRI	GAGCTC	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	599
EcoT22I	ATGCAT	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	599
FaeI	CATG	5 cut(s)	15, 172, 293, 482, 646
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	5 cut(s)	11, 168, 289, 478, 642
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	1062
Fnu4HI	GCNGC	3 cut(s)	543, 564, 606
FokI	GGATG	1 cut(s)	784
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	3 cut(s)	543, 564, 606
FspBI	CTAG	7 cut(s)	462, 470, 491, 573, 600, 777, 833
GluI	GCNGC	3 cut(s)	543, 564, 606
HaeIII	GGCC	4 cut(s)	155, 214, 294, 605
Hin1II	CATG	5 cut(s)	15, 172, 293, 482, 646
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	5 cut(s)	346, 411, 422, 525, 926
HphI	GGTGA	3 cut(s)	30, 45, 317
Hpy166II	GTNNAC	2 cut(s)	250, 1063
Hpy188I	TCNGA	3 cut(s)	931, 1042, 1096
Hpy188III	TCNNGA	7 cut(s)	98, 432, 462, 470, 881, 883, 1000
Hpy8I	GTNNAC	2 cut(s)	250, 1063
HpyAV	CCTTC	3 cut(s)	67, 157, 1094
HpyCH4III	ACNGT	1 cut(s)	429
HpyCH4IV	ACGT	2 cut(s)	117, 726
HpyCH4V	TGCA	7 cut(s)	11, 418, 545, 639, 905, 967, 1112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	569, 790
HpyF3I	CTNAG	3 cut(s)	867, 928, 1041
HpySE526I	ACGT	2 cut(s)	117, 726
Hsp92II	CATG	5 cut(s)	15, 172, 293, 482, 646
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	235, 388
LmnI	GCTCC	3 cut(s)	279, 370, 790
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	3 cut(s)	256, 477, 993
MaeI	CTAG	7 cut(s)	462, 470, 491, 573, 600, 777, 833
MaeII	ACGT	2 cut(s)	117, 726
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	237, 390
MboI	GATC	2 cut(s)	235, 388
MboII	GAAGA	4 cut(s)	139, 451, 644, 692
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	9 cut(s)	125, 216, 285, 531, 609, 720, 849, 933, 1014
MlyI	GAGTC	1 cut(s)	920
MmeI	TCCRAC	1 cut(s)	817
MnlI	CCTC	8 cut(s)	44, 190, 502, 724, 963, 990, 1003, 1062
Mph1103I	ATGCAT	1 cut(s)	13
MseI	TTAA	6 cut(s)	128, 219, 375, 534, 852, 1133
MspA1I	CMGCKG	2 cut(s)	43, 563
MspR9I	CCNGG	1 cut(s)	339
Mva1269I	GAATGC	2 cut(s)	641, 969
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	569, 790
NdeII	GATC	2 cut(s)	235, 388
NlaIII	CATG	5 cut(s)	15, 172, 293, 482, 646
NlaIV	GGNNCC	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	305
NsiI	ATGCAT	1 cut(s)	13
NspI	RCATGY	1 cut(s)	646
NspV	TTCGAA	1 cut(s)	703
PaeR7I	CTCGAG	1 cut(s)	881
PciI	ACATGT	1 cut(s)	642
PctI	GAATGC	2 cut(s)	641, 969
PfeI	GAWTC	4 cut(s)	346, 411, 422, 525
PkrI	GCNGC	3 cut(s)	544, 565, 607
PleI	GAGTC	1 cut(s)	920
PpsI	GAGTC	1 cut(s)	920
Ppu21I	YACGTR	1 cut(s)	118
PscI	ACATGT	1 cut(s)	642
PshBI	ATTAAT	2 cut(s)	219, 534
PsiI	TTATAA	1 cut(s)	1023
Psp124BI	GAGCTC	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	2 cut(s)	154, 603
PstI	CTGCAG	1 cut(s)	420
PstNI	CAGNNNCTG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	284
SaqAI	TTAA	6 cut(s)	128, 219, 375, 534, 852, 1133
SatI	GCNGC	3 cut(s)	543, 564, 606
Sau3AI	GATC	2 cut(s)	235, 388
Sau96I	GGNCC	2 cut(s)	154, 603
SbfI	CCTGCAGG	1 cut(s)	420
ScaI	AGTACT	1 cut(s)	78
SchI	GAGTC	1 cut(s)	920
ScrFI	CCNGG	1 cut(s)	339
SdaI	CCTGCAGG	1 cut(s)	420
SduI	GDGCHC	1 cut(s)	284
SfaNI	GCATC	3 cut(s)	256, 477, 993
SfcI	CTRYAG	1 cut(s)	416
Sfr274I	CTCGAG	1 cut(s)	881
SfuI	TTCGAA	1 cut(s)	703
SlaI	CTCGAG	1 cut(s)	881
SmlI	CTYRAG	3 cut(s)	183, 881, 1066
SmoI	CTYRAG	3 cut(s)	183, 881, 1066
Sse8387I	CCTGCAGG	1 cut(s)	420
Sse9I	AATT	9 cut(s)	125, 216, 285, 531, 609, 720, 849, 933, 1014
SsiI	CCGC	6 cut(s)	41, 563, 606, 734, 801, 892
SspMI	CTAG	7 cut(s)	462, 470, 491, 573, 600, 777, 833
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	1 cut(s)	429
TaiI	ACGT	2 cut(s)	120, 729
TaqI	TCGA	4 cut(s)	391, 703, 765, 882
TasI	AATT	9 cut(s)	125, 216, 285, 531, 609, 720, 849, 933, 1014
TatI	WGTACW	1 cut(s)	76
TauI	GCSGC	2 cut(s)	566, 608
TfiI	GAWTC	4 cut(s)	346, 411, 422, 525
Tru1I	TTAA	6 cut(s)	128, 219, 375, 534, 852, 1133
Tru9I	TTAA	6 cut(s)	128, 219, 375, 534, 852, 1133
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	9 cut(s)	17, 213, 278, 393, 452, 467, 660, 1077, 1113
TspRI	CASTG	1 cut(s)	432
VspI	ATTAAT	2 cut(s)	219, 534
XapI	RAATTY	1 cut(s)	1014
XbaI	TCTAGA	2 cut(s)	461, 469
XceI	RCATGY	1 cut(s)	646
XhoI	CTCGAG	1 cut(s)	881
XmaJI	CCTAGG	1 cut(s)	599
XmiI	GTMKAC	1 cut(s)	1062
XspI	CTAG	7 cut(s)	462, 470, 491, 573, 600, 777, 833
ZrmI	AGTACT	1 cut(s)	78
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.