Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003556.1

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

148840 .. 153065

Gene Structure 4226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003556.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggatagaagacagaaccagcaaccccaatcatcattttcactagggatttgccaatggcttttcaacttggtgatgaacattgcaatagcacaatccctcaagacggtgactctaggccaatccgatgagcactcatgctgcagcagccaaagcatcggaaccatagggacgaaaaaggttcaacaggaacttgctaagcctaatgttcttgagaggttccttgacgataaagaggacattgcaaaattacggaaatgctttgcaggattgtggagtttggatgactcagatattgtcaaaaaagcaatagaaaagccagagttatttgtcatgaagccccaaagagaaggcggagggaacaatatctatggcaatgatgttagggagaccctcattaaattgcagaaggaagggtcagaagcagaggctgcttatatcctgatgcagaggttattccctgctgtttctaccacattcttgatgcgagagggcatttgttataaagacgatactatatctgagcttggggtatatggtgcctacttgaggaacaacgagaaagtgattttgaatgaccagtgtggctacctgatgcgaaccaaggtttcatcatcggatgaaggtggagttgcagctggatttgcggtcttagatagtttatatttaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

224

Amino Acids

24.97

Weight (kDa)

5.38

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AccB1I	GGYRCC	1 cut(s)	539
AciI	CCGC	2 cut(s)	354, 647
AfiI	CCNNNNNNNGG	2 cut(s)	106, 549
AgsI	TTSAA	3 cut(s)	67, 185, 574
AluBI	AGCT	2 cut(s)	526, 638
AluI	AGCT	2 cut(s)	526, 638
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	383
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	5 cut(s)	141, 144, 147, 431, 635
AsuHPI	GGTGA	2 cut(s)	85, 121
BanI	GGYRCC	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	5 cut(s)	128, 156, 159, 418, 647
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	2 cut(s)	44, 116
BfmI	CTRYAG	1 cut(s)	142
BisI	GCNGC	5 cut(s)	142, 145, 148, 432, 636
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	5 cut(s)	143, 146, 149, 433, 637
BmiI	GGNNCC	3 cut(s)	163, 221, 541
BmsI	GCATC	4 cut(s)	165, 435, 474, 585
BpiI	GAAGAC	1 cut(s)	16
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	3 cut(s)	86, 233, 568
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	603
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 549
Bse1I	ACTGG	1 cut(s)	580
Bse3DI	GCAATG	3 cut(s)	81, 240, 382
BseDI	CCNNGG	1 cut(s)	603
BseGI	GGATG	2 cut(s)	289, 625
BseLI	CCNNNNNNNGG	2 cut(s)	106, 549
BseMI	GCAATG	3 cut(s)	81, 240, 382
BseMII	CTCAG	2 cut(s)	303, 513
BseNI	ACTGG	1 cut(s)	580
BseXI	GCAGC	5 cut(s)	128, 156, 159, 418, 647
BshFI	GGCC	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	106, 549
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	120
Bso31I	GGTCTC	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp1720I	GCTNAGC	1 cut(s)	198
BspACI	CCGC	2 cut(s)	354, 647
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	2 cut(s)	302, 514
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	3 cut(s)	163, 221, 541
BspMAI	CTGCAG	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	539
BspTNI	GGTCTC	1 cut(s)	383
BsrDI	GCAATG	3 cut(s)	81, 240, 382
BsrI	ACTGG	1 cut(s)	580
BssECI	CCNNGG	1 cut(s)	603
BssT1I	CCWWGG	1 cut(s)	603
Bst4CI	ACNGT	1 cut(s)	109
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstDEI	CTNAG	4 cut(s)	198, 289, 522, 652
BstENI	CCTNNNNNAGG	1 cut(s)	547
BstF5I	GGATG	2 cut(s)	289, 625
BstMAI	GTCTC	1 cut(s)	383
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 153, 431, 644
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	5 cut(s)	128, 156, 159, 418, 647
BstV2I	GAAGAC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	289, 625
BtsIMutI	CAGTG	1 cut(s)	587
CaiI	CAGNNNCTG	1 cut(s)	431
CciI	TCATGA	1 cut(s)	333
CviAII	CATG	2 cut(s)	138, 334
DdeI	CTNAG	4 cut(s)	198, 289, 522, 652
EciI	GGCGGA	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	603
Eco31I	GGTCTC	1 cut(s)	383
EcoNI	CCTNNNNNAGG	1 cut(s)	547
EcoT14I	CCWWGG	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	603
FaeI	CATG	2 cut(s)	141, 337
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	2 cut(s)	137, 333
Fnu4HI	GCNGC	5 cut(s)	142, 145, 148, 432, 636
FokI	GGATG	2 cut(s)	296, 632
Fsp4HI	GCNGC	5 cut(s)	142, 145, 148, 432, 636
FspBI	CTAG	2 cut(s)	44, 116
GluI	GCNGC	5 cut(s)	142, 145, 148, 432, 636
HaeIII	GGCC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	141, 337
HinfI	GANTC	2 cut(s)	112, 287
HphI	GGTGA	2 cut(s)	85, 121
Hpy188I	TCNGA	6 cut(s)	127, 161, 292, 421, 523, 619
Hpy188III	TCNNGA	5 cut(s)	103, 212, 334, 442, 481
HpyAV	CCTTC	4 cut(s)	344, 403, 407, 617
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	7 cut(s)	86, 144, 245, 266, 406, 448, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 153, 431, 644
HpyF3I	CTNAG	4 cut(s)	198, 289, 522, 652
Hsp92II	CATG	2 cut(s)	141, 337
LpnPI	CCDG	9 cut(s)	32, 173, 252, 333, 455, 474, 593, 605, 624
Lsp1109I	GCAGC	5 cut(s)	128, 156, 159, 418, 647
LweI	GCATC	4 cut(s)	165, 435, 474, 585
MaeI	CTAG	2 cut(s)	44, 116
MaeIII	GTNAC	1 cut(s)	109
MboII	GAAGA	1 cut(s)	21
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	2 cut(s)	248, 401
MlyI	GAGTC	2 cut(s)	106, 281
MnlI	CCTC	9 cut(s)	110, 210, 229, 350, 404, 421, 444, 484, 543
MseI	TTAA	2 cut(s)	399, 668
MspA1I	CMGCKG	1 cut(s)	638
MwoI	GCNNNNNNNGC	4 cut(s)	147, 153, 431, 644
NlaIII	CATG	2 cut(s)	141, 337
NlaIV	GGNNCC	3 cut(s)	163, 221, 541
NmuCI	GTSAC	1 cut(s)	109
PagI	TCATGA	1 cut(s)	333
PkrI	GCNGC	5 cut(s)	143, 146, 149, 433, 637
PleI	GAGTC	2 cut(s)	106, 281
PpsI	GAGTC	2 cut(s)	106, 281
PsiI	TTATAA	1 cut(s)	504
PspN4I	GGNNCC	3 cut(s)	163, 221, 541
PstI	CTGCAG	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	638
SaqAI	TTAA	2 cut(s)	399, 668
SatI	GCNGC	5 cut(s)	142, 145, 148, 432, 636
SchI	GAGTC	2 cut(s)	106, 281
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	8 cut(s)	183, 221, 455, 528, 594, 609, 628, 640
SfaNI	GCATC	4 cut(s)	165, 435, 474, 585
SfcI	CTRYAG	1 cut(s)	142
SmlI	CTYRAG	3 cut(s)	101, 212, 547
SmoI	CTYRAG	3 cut(s)	101, 212, 547
Sse9I	AATT	2 cut(s)	248, 401
SsiI	CCGC	2 cut(s)	354, 647
SspMI	CTAG	2 cut(s)	44, 116
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	1 cut(s)	109
TasI	AATT	2 cut(s)	248, 401
Tru1I	TTAA	2 cut(s)	399, 668
Tru9I	TTAA	2 cut(s)	399, 668
TscAI	CASTG	1 cut(s)	587
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	5 cut(s)	141, 144, 147, 431, 635
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	4 cut(s)	92, 350, 600, 636
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	1 cut(s)	587
XagI	CCTNNNNNAGG	1 cut(s)	547
XspI	CTAG	2 cut(s)	44, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.