Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001525

Physical Location & Seq

Genomic Coordinates Reverse (-)

86139191 .. 86139346

Gene Structure 156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54021

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGCAGAGGTTATTCCCTCATGTTTCTCACACATTCTTGATGCGAGAGGGAATTTGTTATAAAGACGATACTATATCTGAGCTTGGAGTATATGTTGTCTACTTGAGGAACAACAAGAAAGTGATTTTGAATGACCAGTGTGGCTACCTAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000287 GO:0001101 GO:0003674 GO:0003824 GO:0004363 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006518 GO:0006520 GO:0006575 GO:0006749 GO:0006750 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0016874 GO:0016879 GO:0016881 GO:0017076 GO:0019184 GO:0019752 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033218 GO:0034641 GO:0035639 GO:0036094 GO:0042221 GO:0042277 GO:0042398 GO:0042802 GO:0042803 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043295 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046983 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072341 GO:0097159 GO:0097367 GO:1900750 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00270 ko00480 ko01100 ko03008 ko03013 ko04216 map00270 map00480 map01100 map03008 map03013 map04216

Pfam Domains

Protein Families

GSH_synth_ATP

Protein Analysis

51

Amino Acids

6.05

Weight (kDa)

7.81

Isoelectric Point (pI)

17.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSH_synth_ATP	PF03917	1 - 51	1e-11	Eukaryotic glutathione synthase, ATP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27380
fragaria_vesca	FvH4_6g05260 FvH4_6g05260 FvH4_6g05260
malus_domestica	MD04G1210100.v1.1 MD12G1224500.v1.1
prunus_persica	Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1 Prupe.6G331000_v2.0.a1
pyrus_communis	pycom04g18610 pycom04g18620 pycom12g21010
rosa_chinensis	RchiOBHm_Chr2g0172951 RchiOBHm_Chr2g0172961 RchiOBHm_Chr2g0172971 RchiOBHm_Chr2g0172981 RchiOBHm_Chr3g0453991 RchiOBHm_Chr6g0303351
rosa_laevigata	RLG00000022145 RLG00000022146 RLG00000025491
rosa_multiflora	Rmu_sc0003556.1_g000035 Rmu_sc0012743.1_g000009 Rmu_sc0019265.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039730 Rroxscaffold_2G00079380 Rroxscaffold_6G00430810
rosa_rugosa	Rorug02G0563900 Rorug02G0563900 Rorug02G0564000 Rorug02G0564200 Rorug02G0652300
rosa_samantha	Rh1CG053200 Rh1DG057100 Rh2AG640700 Rh2AG640800 Rh2BG654200 Rh2BG654300 Rh2BG654500 Rh2CG619800 Rh2DG667800 Rh3AG054800 Rh3BG056400 Rh3CG055600 Rh3DG056900 Rh4AG280200 Rh4BG285600 Rh6AG435100 Rh6BG144800
rosa_wichuraiana	Rw2G052890 Rw3G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	51
BmsI	GCATC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bse1I	ACTGG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	136
BspCNI	CTCAG	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	143
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	2 cut(s)	82, 144
CviKI_1	RGCY	2 cut(s)	82, 144
DdeI	CTNAG	1 cut(s)	78
FaeI	CATG	1 cut(s)	23
FaiI	YATR	5 cut(s)	21, 60, 74, 91, 93
FatI	CATG	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	99
FspEI	CC	8 cut(s)	29, 30, 32, 33, 69, 91, 126, 149
Hin1II	CATG	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	23
LpnPI	CCDG	1 cut(s)	149
LweI	GCATC	1 cut(s)	30
MluCI	AATT	1 cut(s)	51
MnlI	CCTC	3 cut(s)	27, 40, 99
NlaIII	CATG	1 cut(s)	23
PsiI	TTATAA	1 cut(s)	60
SetI	ASST	3 cut(s)	11, 84, 150
SfaNI	GCATC	1 cut(s)	30
SgeI	CNNG	7 cut(s)	32, 49, 56, 95, 115, 127, 148
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	1 cut(s)	51
TasI	AATT	1 cut(s)	51
TscAI	CASTG	1 cut(s)	143
TspRI	CASTG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	51
XmiI	GTMKAC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.