Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002048

Physical Location & Seq

Genomic Coordinates Forward (+)

20616070 .. 20617976

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16260.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCTTCGCCGTCAGAACGCGAAACTCCGTCGCCGAACATCTACATACCGCCGGAATGGTCCGAGGCAGCAGACTGTATAGCATACGATTCAGTCACTTGGCCGCCACCCATTGCCTTAGTATGTGGCGCTAAAAACTGCGGAAAGTCCACCTTTTCCCGCCACCTCCTCAACATTTTTCTCCGGAGGTATAAAAAAGTTGGTTACTTGGATACAGATGTCGGTCAACCGGAGTTCAGTCCTCCTGGTTTTGTATCTCTCACTGTAATAGATGAAGTCACTCCAGATTTGACAATCCCTCATCTGAAGACACCGGAGAGATGTCTTTTCTTTGGTGATGTTTCTTCGAAGACAAATCCTACAACATACTTGAATTCTATATTTTCTTTATATGATTACTATAAGAAGGAATACTGCTTATCTGACCGGAGTGATAGACCTACCAAGACTGGATTGCCTCTTGTTGTGAATACACCTGGCTGGGTGAAAGGTATGTGTTGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000448 GO:0000460 GO:0000463 GO:0000466 GO:0000469 GO:0000470 GO:0000478 GO:0000479 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051731 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLP1_P

Protein Analysis

169

Amino Acids

18.89

Weight (kDa)

6.1

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002048)

Species	Orthologous Gene IDs
malus_domestica	MD07G1221000.v1.1
prunus_persica	Prupe.1G119300_v2.0.a1 Prupe.1G119300_v2.0.a1
pyrus_communis	pycom06g16260
rosa_chinensis	RchiOBHm_Chr2g0109271 RchiOBHm_Chr3g0449971 RchiOBHm_Chr5g0055151 RchiOBHm_Chr7g0225831
rosa_laevigata	RLG00000013375 RLG00000014560 RLG00000019363 RLG00000034972 RLG00000036177
rosa_multiflora	Rmu_sc0000820.1_g000009 Rmu_sc0010632.1_g000015 Rmu_sc0021708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326060
rosa_rugosa	Rorug04G0011200 Rorug05G0291600 Rorug06G0106800 Rorug06G0229800
rosa_samantha	Rh1AG168800 Rh1BG015000 Rh1CG156200 Rh2BG108000 Rh2BG192200 Rh2CG109800 Rh2DG571800 Rh3AG023500 Rh3CG317800 Rh3DG024000 Rh4AG069700 Rh4AG336500 Rh4CG032300 Rh4DG120200 Rh4DG339000 Rh5CG394600 Rh5DG417000 Rh5DG465600 Rh6BG052200 Rh6CG121900 Rh6DG342900 Rh6DG343000 Rh7AG365200 Rh7CG384100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	183
AciI	CCGC	4 cut(s)	50, 104, 141, 160
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	326
AgsI	TTSAA	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	244, 475
Aor13HI	TCCGGA	1 cut(s)	183
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	347, 496
AsuII	TTCGAA	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	60
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BbsI	GAAGAC	2 cut(s)	314, 356
BbvI	GCAGC	1 cut(s)	80
BciT130I	CCWGG	2 cut(s)	246, 477
BciVI	GTATCC	1 cut(s)	205
BfoI	RGCGCY	1 cut(s)	132
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	2 cut(s)	69, 104
BlsI	GCNGC	2 cut(s)	70, 105
Bme1390I	CCNGG	2 cut(s)	246, 477
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	60
BmrFI	CCNGG	2 cut(s)	246, 477
BpiI	GAAGAC	2 cut(s)	314, 356
BpmI	CTGGAG	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	63
BsaWI	WCCGGW	4 cut(s)	183, 229, 313, 426
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	111
BseAI	TCCGGA	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	246, 477
BseDI	CCNNGG	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	80
BseYI	CCCAGC	1 cut(s)	480
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	103
BsiSI	CCGG	5 cut(s)	53, 184, 230, 314, 427
BsnI	GGCC	1 cut(s)	103
Bsp119I	TTCGAA	1 cut(s)	347
Bsp13I	TCCGGA	1 cut(s)	183
BspACI	CCGC	4 cut(s)	50, 104, 141, 160
BspANI	GGCC	1 cut(s)	103
BspEI	TCCGGA	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	21
BspT104I	TTCGAA	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	246, 477
Bst4CI	ACNGT	2 cut(s)	77, 265
BstBI	TTCGAA	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstNI	CCWGG	2 cut(s)	246, 477
BstSCI	CCNGG	2 cut(s)	244, 475
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	80
BstV2I	GAAGAC	2 cut(s)	314, 356
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	261
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	60
CviJI	RGCY	3 cut(s)	5, 103, 480
CviKI_1	RGCY	3 cut(s)	5, 103, 480
DdeI	CTNAG	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	2 cut(s)	244, 475
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	2 cut(s)	69, 104
Fsp4HI	GCNGC	2 cut(s)	69, 104
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	2 cut(s)	69, 104
GsaI	CCCAGC	1 cut(s)	484
GsuI	CTGGAG	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	5 cut(s)	53, 184, 230, 314, 427
HhaI	GCGC	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	5 cut(s)	53, 184, 230, 314, 427
HphI	GGTGA	2 cut(s)	347, 496
Hpy166II	GTNNAC	2 cut(s)	150, 227
Hpy188I	TCNGA	4 cut(s)	16, 64, 306, 424
Hpy188III	TCNNGA	2 cut(s)	184, 284
Hpy8I	GTNNAC	2 cut(s)	150, 227
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	2 cut(s)	77, 265
HpyF3I	CTNAG	1 cut(s)	118
HspAI	GCGC	1 cut(s)	129
Kpn2I	TCCGGA	1 cut(s)	183
Lsp1109I	GCAGC	1 cut(s)	80
MaeIII	GTNAC	3 cut(s)	94, 203, 277
MboII	GAAGA	3 cut(s)	319, 336, 361
MluCI	AATT	1 cut(s)	373
MnlI	CCTC	7 cut(s)	58, 176, 179, 180, 252, 309, 468
MroI	TCCGGA	1 cut(s)	183
MspI	CCGG	5 cut(s)	53, 184, 230, 314, 427
MspR9I	CCNGG	2 cut(s)	246, 477
MvaI	CCWGG	2 cut(s)	246, 477
MvnI	CGCG	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	94, 277
NspV	TTCGAA	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	70, 105
Psp6I	CCWGG	2 cut(s)	244, 475
PspFI	CCCAGC	1 cut(s)	480
PspGI	CCWGG	2 cut(s)	244, 475
PspPI	GGNCC	1 cut(s)	60
SatI	GCNGC	2 cut(s)	69, 104
Sau96I	GGNCC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	246, 477
SetI	ASST	6 cut(s)	155, 168, 191, 442, 478, 493
SfuI	TTCGAA	1 cut(s)	347
SinI	GGWCC	1 cut(s)	60
Sse9I	AATT	1 cut(s)	373
SsiI	CCGC	4 cut(s)	50, 104, 141, 160
StyD4I	CCNGG	2 cut(s)	244, 475
TaaI	ACNGT	2 cut(s)	77, 265
TaqI	TCGA	1 cut(s)	347
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	1 cut(s)	373
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	89
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	2 cut(s)	94, 277
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	2 cut(s)	94, 277
TspDTI	ATGAA	1 cut(s)	288
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	60
XapI	RAATTY	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.