Rh4AG336500

Protein of unknown function (DUF632)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
64551978 .. 64553613
1636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG336500.1

Sequence Viewer

Length: 621 bp
ATGGAGAATATGATGAACAAGCTCCAGAATTTGGTCGCGTACCCCAAAATCAACAAAGATTTCTACAGCCATACCCTCTCCGGCGGCGTCATCACTCTCGCCTCCTCCATCGTTATGCTCCTGCTCTTCTCCGAGGTCAGTCTTATCGAATTCAACCCACAAACCAAAATGGGTGGGAGGAAGCTGCTACGAAGATCGGGAAGAGCTCCTGATGATATATCTAGTGTTGTGCTGGTTGAAAAGGATAGGGACAAAGTTGGAGTTGAAGTAAAGGATTTGTATGCCAGAATTTTGTTTGCCATATGCAGTGGTGAATCAATACCACAAAGGATCGGAAAACTGAGAGATGAAGAGCTGCAGCCACAACTTATCGAGCTGCTAAAGGGCTTCATGAGAAATTGGTGGATAATCACCTGTTGGAACTGCATGAAACTCAAAACAAAATCATGTCTAGAGTGGGATCACTTAACCGCCCCACCATTGGAATGGTCTGCAATGACTCGCACCAGCTTGCTACTTTCAAGCTTGAAGCAGAACTTCAAAATTGGCATGCTTGCTTTGCATCATACTTTTCTTCCCAGAAAAGCATACAGTGATAGGGCAGTGAACTTGTATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

206

Amino Acids

23.58

Weight (kDa)

9.39

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERGIC_N PF13850 9 - 44 9e-06 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
DUF632 PF04782 84 - 157 2.7e-13 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 31
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 84, 471
AclWI GGATC 2 cut(s) 338, 468
AcsI RAATTY 3 cut(s) 28, 149, 288
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 31, 481
AgsI TTSAA 6 cut(s) 154, 239, 266, 522, 529, 541
AluBI AGCT 7 cut(s) 22, 184, 206, 355, 376, 510, 525
AluI AGCT 7 cut(s) 22, 184, 206, 355, 376, 510, 525
Alw21I GWGCWC 1 cut(s) 208
AlwI GGATC 2 cut(s) 338, 468
ApeKI GCWGC 4 cut(s) 184, 355, 358, 376
ApoI RAATTY 3 cut(s) 28, 149, 288
AsuHPI GGTGA 2 cut(s) 323, 403
BanII GRGCYC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 4 cut(s) 171, 342, 363, 370
BccI CCATC 1 cut(s) 116
BfaI CTAG 2 cut(s) 222, 452
BfmI CTRYAG 2 cut(s) 64, 356
BisI GCNGC 5 cut(s) 85, 185, 356, 359, 377
BlsI GCNGC 5 cut(s) 86, 186, 357, 360, 378
BmsI GCATC 1 cut(s) 571
BpmI CTGGAG 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 481
Bse3DI GCAATG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 2 cut(s) 31, 481
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 1 cut(s) 332
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 4 cut(s) 171, 342, 363, 370
Bsh1236I CGCG 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 208
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 31, 481
BsmFI GGGAC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 3 cut(s) 194, 330, 460
BspACI CCGC 2 cut(s) 84, 471
BspCNI CTCAG 1 cut(s) 333
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 390
BspMAI CTGCAG 1 cut(s) 360
BspPI GGATC 2 cut(s) 338, 468
BspQI GCTCTTC 3 cut(s) 131, 196, 345
BsrDI GCAATG 1 cut(s) 501
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 3 cut(s) 194, 330, 460
BssNI GRCGYC 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 593
Bst6I CTCTTC 3 cut(s) 131, 196, 345
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 3 cut(s) 512, 551, 555
BstDEI CTNAG 1 cut(s) 341
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 3 cut(s) 197, 333, 463
BstMBI GATC 3 cut(s) 194, 330, 460
BstMWI GCNNNNNNNGC 1 cut(s) 559
BstNSI RCATGY 1 cut(s) 553
BstSFI CTRYAG 2 cut(s) 64, 356
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 4 cut(s) 171, 342, 363, 370
BstXI CCANNNNNNTGG 1 cut(s) 486
BtsI GCAGTG 2 cut(s) 313, 609
BtsIMutI CAGTG 3 cut(s) 313, 598, 609
Cac8I GCNNGC 3 cut(s) 512, 551, 555
CciI TCATGA 1 cut(s) 390
CseI GACGC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 40
CspCI CAANNNNNGTGG 2 cut(s) 154, 189
CviAII CATG 4 cut(s) 391, 427, 447, 550
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 1 cut(s) 341
DpnI GATC 3 cut(s) 196, 332, 462
DpnII GATC 3 cut(s) 194, 330, 460
Eam1104I CTCTTC 3 cut(s) 131, 196, 345
EarI CTCTTC 3 cut(s) 131, 196, 345
Ecl136II GAGCTC 1 cut(s) 206
Eco24I GRGCYC 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 206
EcoRI GAATTC 1 cut(s) 149
EcoT38I GRGCYC 1 cut(s) 208
FaeI CATG 4 cut(s) 394, 430, 450, 553
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FaqI GGGAC 1 cut(s) 263
FatI CATG 4 cut(s) 390, 426, 446, 549
FauNDI CATATG 1 cut(s) 302
Fnu4HI GCNGC 5 cut(s) 85, 185, 356, 359, 377
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 5 cut(s) 85, 185, 356, 359, 377
FspBI CTAG 2 cut(s) 222, 452
GluI GCNGC 5 cut(s) 85, 185, 356, 359, 377
GsuI CTGGAG 1 cut(s) 8
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 4 cut(s) 394, 430, 450, 553
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 2 cut(s) 314, 499
HpaII CCGG 1 cut(s) 81
HphI GGTGA 2 cut(s) 323, 403
Hpy166II GTNNAC 1 cut(s) 607
Hpy188I TCNGA 2 cut(s) 133, 335
Hpy188III TCNNGA 5 cut(s) 25, 198, 209, 391, 452
Hpy8I GTNNAC 1 cut(s) 607
HpyCH4III ACNGT 1 cut(s) 593
HpyCH4V TGCA 5 cut(s) 306, 358, 426, 494, 562
HpyF10VI GCNNNNNNNGC 1 cut(s) 559
HpyF3I CTNAG 1 cut(s) 341
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 4 cut(s) 394, 430, 450, 553
Kzo9I GATC 3 cut(s) 194, 330, 460
LguI GCTCTTC 3 cut(s) 131, 196, 345
LmnI GCTCC 3 cut(s) 27, 123, 211
LpnPI CCDG 9 cut(s) 38, 94, 134, 218, 222, 298, 427, 520, 592
Lsp1109I GCAGC 4 cut(s) 171, 342, 363, 370
LweI GCATC 1 cut(s) 571
MaeI CTAG 2 cut(s) 222, 452
MalI GATC 3 cut(s) 196, 332, 462
MboI GATC 3 cut(s) 194, 330, 460
MboII GAAGA 5 cut(s) 118, 204, 213, 362, 566
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 5 cut(s) 28, 149, 288, 397, 543
MlyI GAGTC 1 cut(s) 493
MmeI TCCRAC 2 cut(s) 238, 398
MnlI CCTC 5 cut(s) 86, 112, 115, 127, 171
MseI TTAA 1 cut(s) 467
MslI CAYNNNNRTG 2 cut(s) 113, 484
MspI CCGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 559
NdeI CATATG 1 cut(s) 302
NdeII GATC 3 cut(s) 194, 330, 460
NlaIII CATG 4 cut(s) 394, 430, 450, 553
NspI RCATGY 1 cut(s) 553
PaeI GCATGC 1 cut(s) 553
PagI TCATGA 1 cut(s) 390
PciSI GCTCTTC 3 cut(s) 131, 196, 345
PfeI GAWTC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 5 cut(s) 86, 186, 357, 360, 378
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
Psp124BI GAGCTC 1 cut(s) 208
PstI CTGCAG 1 cut(s) 360
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 2 cut(s) 113, 484
SacI GAGCTC 1 cut(s) 208
SapI GCTCTTC 3 cut(s) 131, 196, 345
SaqAI TTAA 1 cut(s) 467
SatI GCNGC 5 cut(s) 85, 185, 356, 359, 377
Sau3AI GATC 3 cut(s) 194, 330, 460
SchI GAGTC 1 cut(s) 493
SduI GDGCHC 1 cut(s) 208
SetI ASST 9 cut(s) 24, 138, 186, 208, 357, 378, 416, 512, 527
SfaNI GCATC 1 cut(s) 571
SfcI CTRYAG 2 cut(s) 64, 356
SmiMI CAYNNNNRTG 2 cut(s) 113, 484
SphI GCATGC 1 cut(s) 553
Sse9I AATT 5 cut(s) 28, 149, 288, 397, 543
SsiI CCGC 2 cut(s) 84, 471
SspMI CTAG 2 cut(s) 222, 452
SstI GAGCTC 1 cut(s) 208
TaaI ACNGT 1 cut(s) 593
TaqI TCGA 2 cut(s) 147, 372
TasI AATT 5 cut(s) 28, 149, 288, 397, 543
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TscAI CASTG 3 cut(s) 313, 598, 609
TseI GCWGC 4 cut(s) 184, 355, 358, 376
TspDTI ATGAA 4 cut(s) 29, 363, 379, 443
TspRI CASTG 3 cut(s) 313, 598, 609
Van91I CCANNNNNTGG 1 cut(s) 31
XapI RAATTY 3 cut(s) 28, 149, 288
XbaI TCTAGA 1 cut(s) 451
XceI RCATGY 1 cut(s) 553
XcmI CCANNNNNNNNNTGG 1 cut(s) 483
XspI CTAG 2 cut(s) 222, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.