Rh5DG417000

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002048
Physical Location & Seq
Forward (+)
66274788 .. 66275514
727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG417000.1

Sequence Viewer

Length: 372 bp
ATGGTTCTGATGGTCTATGCATTATGTATCTTTACGGGCGCACTTCGTCCAGAGATGGTACCACAATTTGCAGGTATGAACAGAAAATGGCAATGTGTCATACGGATACTGCAAGTTTCATGGCACCCTTGCAGTGATACTCATCTGGGAATTCTTTCTTCTGATTCAGTTTTCAGCTTCATGAGAAATTCGTTGGAACTGCATGAAACTCAAATCAAAATCATGTCTAGAGTGAGATCACTTAACCGCCCCACCATTGGAATGGTCTGCAATGACTCGCACCAGCTTGCTACTTTCAAGCTTGAAGCCGAACTTCAAAATTGGCATGCTTGCTTTGTATCATACTTTTCTTCCCAGAAAAGCGTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

123

Amino Acids

14.15

Weight (kDa)

8.72

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 64 - 121 2.5e-12 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 62
Acc65I GGTACC 1 cut(s) 58
AccB1I GGYRCC 2 cut(s) 58, 123
AciI CCGC 1 cut(s) 247
AcsI RAATTY 2 cut(s) 150, 187
AfaI GTAC 2 cut(s) 60, 366
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 3 cut(s) 298, 305, 317
AluBI AGCT 3 cut(s) 177, 286, 301
AluI AGCT 3 cut(s) 177, 286, 301
ApoI RAATTY 2 cut(s) 150, 187
Asp700I GAANNNNTTC 1 cut(s) 154
Asp718I GGTACC 1 cut(s) 58
AspLEI GCGC 1 cut(s) 41
BanI GGYRCC 2 cut(s) 58, 123
BccI CCATC 2 cut(s) 4, 49
BciVI GTATCC 1 cut(s) 99
BfaI CTAG 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 62
BfuI GTATCC 1 cut(s) 99
BmiI GGNNCC 2 cut(s) 60, 125
BsaBI GATNNNNATC 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse3DI GCAATG 2 cut(s) 98, 277
Bse8I GATNNNNATC 1 cut(s) 141
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 2 cut(s) 98, 277
BshNI GGYRCC 2 cut(s) 58, 123
BslI CCNNNNNNNGG 1 cut(s) 257
Bsp143I GATC 1 cut(s) 236
BspACI CCGC 1 cut(s) 247
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 60, 125
BspMI ACCTGC 1 cut(s) 62
BspT107I GGYRCC 2 cut(s) 58, 123
BsrDI GCAATG 2 cut(s) 98, 277
BssMI GATC 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 369
BstC8I GCNNGC 3 cut(s) 288, 327, 331
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 1 cut(s) 239
BstMBI GATC 1 cut(s) 236
BstNSI RCATGY 1 cut(s) 329
BstXI CCANNNNNNTGG 1 cut(s) 262
BsuI GTATCC 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 139
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 3 cut(s) 288, 327, 331
CciI TCATGA 1 cut(s) 180
CfoI GCGC 1 cut(s) 41
Csp6I GTAC 2 cut(s) 59, 365
CviAII CATG 5 cut(s) 120, 181, 203, 223, 326
CviJI RGCY 4 cut(s) 177, 286, 301, 308
CviKI_1 RGCY 4 cut(s) 177, 286, 301, 308
CviQI GTAC 2 cut(s) 59, 365
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 22
FaeI CATG 5 cut(s) 123, 184, 206, 226, 329
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FatI CATG 5 cut(s) 119, 180, 202, 222, 325
FspBI CTAG 1 cut(s) 228
GlaI GCGC 1 cut(s) 40
HhaI GCGC 1 cut(s) 41
Hin1II CATG 5 cut(s) 123, 184, 206, 226, 329
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 2 cut(s) 164, 275
Hpy188I TCNGA 2 cut(s) 9, 163
Hpy188III TCNNGA 3 cut(s) 50, 181, 228
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4V TGCA 6 cut(s) 20, 71, 112, 132, 202, 270
Hsp92II CATG 5 cut(s) 123, 184, 206, 226, 329
HspAI GCGC 1 cut(s) 39
KpnI GGTACC 1 cut(s) 62
Kzo9I GATC 1 cut(s) 236
LpnPI CCDG 5 cut(s) 57, 63, 131, 296, 368
MaeI CTAG 1 cut(s) 228
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MboII GAAGA 2 cut(s) 150, 342
MluCI AATT 4 cut(s) 65, 150, 187, 319
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 174
Mph1103I ATGCAT 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 154
MseI TTAA 1 cut(s) 243
MslI CAYNNNNRTG 1 cut(s) 260
NdeII GATC 1 cut(s) 236
NlaIII CATG 5 cut(s) 123, 184, 206, 226, 329
NlaIV GGNNCC 2 cut(s) 60, 125
NsiI ATGCAT 1 cut(s) 22
NspI RCATGY 1 cut(s) 329
PaeI GCATGC 1 cut(s) 329
PagI TCATGA 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 164
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 60, 125
RsaI GTAC 2 cut(s) 60, 366
RsaNI GTAC 2 cut(s) 59, 365
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 1 cut(s) 243
Sau3AI GATC 1 cut(s) 236
SchI GAGTC 1 cut(s) 269
SetI ASST 4 cut(s) 76, 179, 288, 303
SmiMI CAYNNNNRTG 1 cut(s) 260
SphI GCATGC 1 cut(s) 329
Sse9I AATT 4 cut(s) 65, 150, 187, 319
SsiI CCGC 1 cut(s) 247
SspMI CTAG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 369
TasI AATT 4 cut(s) 65, 150, 187, 319
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 1 cut(s) 139
TspDTI ATGAA 4 cut(s) 92, 108, 169, 219
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 1 cut(s) 139
XapI RAATTY 2 cut(s) 150, 187
XbaI TCTAGA 1 cut(s) 227
XceI RCATGY 1 cut(s) 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 154
XspI CTAG 1 cut(s) 228
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.