Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002048

Physical Location & Seq

Genomic Coordinates Forward (+)

9115707 .. 9118473

Gene Structure 2767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG108000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCTACTCATCGGACATTAGATCTGACGTCCAGTCTTGAAGTGGGCTCAACAACAAACCATAACGCTGGAGATTTGAATTCATTTCATAACGCTCGATTAGTATTAACGATTGCCTTCCAGTTTCCCTTCGAGAGTAGTCTACAGGATAATGTTGCATCCATGGCACGCCAATATGTACGAAATGTCATCTCATCAGTGCAGAGTGTGATATTCAGAGATGGTTATGCTCTTGAAACTGCTGTTTTGTCAGTTCGGATATCTTATTGCACCTCCAGAAGGAAACCAATTGGACCTCAGAGTGATTGGAAGCTGAATAATAATATCCATGTATCCAAGAAGGAGCACAAAAGCAAAAAAATTCAGCCAGGAATCTCTGATATAGTTGAATTGCTGGATGCTTACAGAGCTGATGGTGCTGTGATCATTTGCTTCACTTCTGGGAAAAGATATCCTGGAAATCAACCATCCCGAAAGTTCTTTCGGCATAAAGAACAGAGTGATATGAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

171

Amino Acids

19.29

Weight (kDa)

9.69

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002048)

Species	Orthologous Gene IDs
malus_domestica	MD07G1221000.v1.1
prunus_persica	Prupe.1G119300_v2.0.a1 Prupe.1G119300_v2.0.a1
pyrus_communis	pycom06g16260
rosa_chinensis	RchiOBHm_Chr2g0109271 RchiOBHm_Chr3g0449971 RchiOBHm_Chr5g0055151 RchiOBHm_Chr7g0225831
rosa_laevigata	RLG00000013375 RLG00000014560 RLG00000019363 RLG00000034972 RLG00000036177
rosa_multiflora	Rmu_sc0000820.1_g000009 Rmu_sc0010632.1_g000015 Rmu_sc0021708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326060
rosa_rugosa	Rorug04G0011200 Rorug05G0291600 Rorug06G0106800 Rorug06G0229800
rosa_samantha	Rh1AG168800 Rh1BG015000 Rh1CG156200 Rh2BG108000 Rh2BG192200 Rh2CG109800 Rh2DG571800 Rh3AG023500 Rh3CG317800 Rh3DG024000 Rh4AG069700 Rh4AG336500 Rh4CG032300 Rh4DG120200 Rh4DG339000 Rh5CG394600 Rh5DG417000 Rh5DG465600 Rh6BG052200 Rh6CG121900 Rh6DG342900 Rh6DG343000 Rh7AG365200 Rh7CG384100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	142
AcsI	RAATTY	3 cut(s)	79, 360, 509
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	279
AgsI	TTSAA	4 cut(s)	41, 79, 236, 389
AhdI	GACNNNNNGTC	1 cut(s)	33
AjnI	CCWGG	2 cut(s)	367, 454
AluBI	AGCT	2 cut(s)	313, 410
AluI	AGCT	2 cut(s)	313, 410
Alw21I	GWGCWC	1 cut(s)	348
ApoI	RAATTY	3 cut(s)	79, 360, 509
AspS9I	GGNCC	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	348
BccI	CCATC	3 cut(s)	215, 407, 475
BciT130I	CCWGG	2 cut(s)	369, 456
BciVI	GTATCC	1 cut(s)	343
BclI	TGATCA	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	343
BglII	AGATCT	1 cut(s)	22
Bme1390I	CCNGG	2 cut(s)	369, 456
Bme18I	GGWCC	1 cut(s)	293
BmeRI	GACNNNNNGTC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	293
BmrFI	CCNGG	2 cut(s)	369, 456
BmsI	GCATC	2 cut(s)	167, 388
BpmI	CTGGAG	2 cut(s)	90, 259
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
Bse1I	ACTGG	2 cut(s)	33, 121
BseBI	CCWGG	2 cut(s)	369, 456
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	3 cut(s)	158, 403, 467
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	2 cut(s)	33, 121
BsgI	GTGCAG	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	279
Bsp1286I	GDGCHC	2 cut(s)	50, 348
Bsp143I	GATC	2 cut(s)	22, 423
Bsp19I	CCATGG	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	33, 121
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	2 cut(s)	22, 423
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	369, 456
BstACI	GRCGYC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	1 cut(s)	162
BstENI	CCTNNNNNAGG	1 cut(s)	277
BstF5I	GGATG	3 cut(s)	158, 403, 467
BstKTI	GATC	2 cut(s)	25, 426
BstMBI	GATC	2 cut(s)	22, 423
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 407, 416
BstNI	CCWGG	2 cut(s)	369, 456
BstSCI	CCNGG	2 cut(s)	367, 454
BstSFI	CTRYAG	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	22
BsuI	GTATCC	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	3 cut(s)	158, 403, 467
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	2 cut(s)	163, 329
CviJI	RGCY	5 cut(s)	5, 48, 313, 367, 410
CviKI_1	RGCY	5 cut(s)	5, 48, 313, 367, 410
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	2 cut(s)	24, 425
DpnII	GATC	2 cut(s)	22, 423
DriI	GACNNNNNGTC	1 cut(s)	33
Eam1105I	GACNNNNNGTC	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	50
Eco32I	GATATC	2 cut(s)	261, 452
Eco47I	GGWCC	1 cut(s)	293
EcoNI	CCTNNNNNAGG	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	2 cut(s)	367, 454
EcoRV	GATATC	2 cut(s)	261, 452
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	2 cut(s)	166, 332
FaiI	YATR	9 cut(s)	63, 90, 164, 177, 228, 330, 383, 489, 506
FatI	CATG	2 cut(s)	162, 328
FbaI	TGATCA	1 cut(s)	423
FblI	GTMKAC	1 cut(s)	142
FokI	GGATG	3 cut(s)	145, 410, 454
FriOI	GRGCYC	1 cut(s)	50
GsuI	CTGGAG	2 cut(s)	90, 259
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	166, 332
HinfI	GANTC	1 cut(s)	372
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	6 cut(s)	15, 27, 218, 258, 300, 379
Hpy188III	TCNNGA	5 cut(s)	38, 133, 233, 276, 471
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	4 cut(s)	127, 139, 273, 334
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	3 cut(s)	158, 202, 270
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 407, 416
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	1 cut(s)	29
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	166, 332
Ksp22I	TGATCA	1 cut(s)	423
Kzo9I	GATC	2 cut(s)	22, 423
LmnI	GCTCC	1 cut(s)	343
LweI	GCATC	2 cut(s)	167, 388
MaeII	ACGT	1 cut(s)	29
MalI	GATC	2 cut(s)	24, 425
MboI	GATC	2 cut(s)	22, 423
MfeI	CAATTG	1 cut(s)	288
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	50, 348
MluCI	AATT	5 cut(s)	79, 288, 360, 389, 509
MnlI	CCTC	2 cut(s)	283, 306
MseI	TTAA	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	369, 456
MunI	CAATTG	1 cut(s)	288
MvaI	CCWGG	2 cut(s)	369, 456
MwoI	GCNNNNNNNGC	3 cut(s)	164, 407, 416
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	2 cut(s)	22, 423
NlaIII	CATG	2 cut(s)	166, 332
PfeI	GAWTC	1 cut(s)	372
PfoI	TCCNGGA	1 cut(s)	454
Psp6I	CCWGG	2 cut(s)	367, 454
PspGI	CCWGG	2 cut(s)	367, 454
PspPI	GGNCC	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	107
Sau3AI	GATC	2 cut(s)	22, 423
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	369, 456
SduI	GDGCHC	2 cut(s)	50, 348
SetI	ASST	5 cut(s)	32, 275, 298, 315, 412
SfaNI	GCATC	2 cut(s)	167, 388
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	293
Sse9I	AATT	5 cut(s)	79, 288, 360, 389, 509
StyD4I	CCNGG	2 cut(s)	367, 454
StyI	CCWWGG	1 cut(s)	162
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	2 cut(s)	97, 132
TasI	AATT	5 cut(s)	79, 288, 360, 389, 509
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TscAI	CASTG	1 cut(s)	204
TspDTI	ATGAA	2 cut(s)	72, 77
TspRI	CASTG	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	293
XagI	CCTNNNNNAGG	1 cut(s)	277
XapI	RAATTY	3 cut(s)	79, 360, 509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	142
ZraI	GACGTC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.