Rh6DG343000

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002048
Physical Location & Seq
Forward (+)
54574903 .. 54576642
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG343000.1

Sequence Viewer

Length: 372 bp
ATGTTTTTGAAGGGTGGTGGTATCCTTACTCTGGCAGAGATATATCAATTGTTAGCTAGGAAGTTATCTGGGAAGGTGTTCTTAGAAGCTGCCAACTACCAACTGAAAAGAGATTTTGTTAGAGAGTACCAGGCTATTGAGAGAGGGACAGAAGGCACGAGGGACAAAGTTGGAGTTGAAGTAAAGGACTTGTATGCCAGAATTTTGGCTGCCATATGCAGTGCTGAATCAATATCTCAAAGGATCAAAAGACTGAGAGATGAAGAGCTGCAGCCACAACTTATCGAGCTGCTAAAGGGCTTCATGAGAAATTGGCGGATGATTACCTGTTGGAATTGCATGAAACTCAAAACAAAATCATGTCTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

123

Amino Acids

14.26

Weight (kDa)

9.41

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 51 - 109 4.6e-17 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 316
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 201
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 2 cut(s) 10, 179
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 4 cut(s) 56, 89, 268, 289
AluI AGCT 4 cut(s) 56, 89, 268, 289
AlwI GGATC 1 cut(s) 251
ApeKI GCWGC 5 cut(s) 89, 209, 268, 271, 289
ApoI RAATTY 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 77
BauI CACGAG 1 cut(s) 157
BbvI GCAGC 5 cut(s) 76, 196, 255, 276, 283
BciT130I CCWGG 1 cut(s) 131
BciVI GTATCC 1 cut(s) 32
BfaI CTAG 2 cut(s) 57, 365
BfmI CTRYAG 1 cut(s) 269
BfuI GTATCC 1 cut(s) 32
BisI GCNGC 5 cut(s) 90, 210, 269, 272, 290
BlsI GCNGC 5 cut(s) 91, 211, 270, 273, 291
Bme1390I CCNGG 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 131
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 131
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 245
BseXI GCAGC 5 cut(s) 76, 196, 255, 276, 283
BslFI GGGAC 2 cut(s) 160, 176
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 2 cut(s) 160, 176
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 246
BspHI TCATGA 1 cut(s) 303
BspMAI CTGCAG 1 cut(s) 273
BspPI GGATC 1 cut(s) 251
BspQI GCTCTTC 1 cut(s) 258
BssMI GATC 1 cut(s) 243
BssSI CACGAG 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 258
BstDEI CTNAG 2 cut(s) 82, 254
BstF5I GGATG 1 cut(s) 324
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 269
BstV1I GCAGC 5 cut(s) 76, 196, 255, 276, 283
BstXI CCANNNNNNTGG 1 cut(s) 205
BsuI GTATCC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 324
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 226
CciI TCATGA 1 cut(s) 303
Csp6I GTAC 1 cut(s) 127
CviAII CATG 3 cut(s) 304, 340, 360
CviJI RGCY 8 cut(s) 56, 89, 134, 209, 268, 274, 289, 300
CviKI_1 RGCY 8 cut(s) 56, 89, 134, 209, 268, 274, 289, 300
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 2 cut(s) 82, 254
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
EciI GGCGGA 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 129
FaeI CATG 3 cut(s) 307, 343, 363
FaiI YATR 7 cut(s) 43, 195, 215, 217, 305, 341, 361
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FaqI GGGAC 2 cut(s) 160, 176
FatI CATG 3 cut(s) 303, 339, 359
FauNDI CATATG 1 cut(s) 215
Fnu4HI GCNGC 5 cut(s) 90, 210, 269, 272, 290
FokI GGATG 1 cut(s) 331
Fsp4HI GCNGC 5 cut(s) 90, 210, 269, 272, 290
FspBI CTAG 2 cut(s) 57, 365
GluI GCNGC 5 cut(s) 90, 210, 269, 272, 290
Hin1II CATG 3 cut(s) 307, 343, 363
HinfI GANTC 1 cut(s) 227
Hpy188III TCNNGA 2 cut(s) 304, 365
HpyAV CCTTC 3 cut(s) 4, 67, 146
HpyCH4V TGCA 3 cut(s) 219, 271, 339
HpyF3I CTNAG 2 cut(s) 82, 254
Hsp92II CATG 3 cut(s) 307, 343, 363
Kzo9I GATC 1 cut(s) 243
LguI GCTCTTC 1 cut(s) 258
LpnPI CCDG 6 cut(s) 17, 54, 116, 143, 211, 340
Lsp1109I GCAGC 5 cut(s) 76, 196, 255, 276, 283
MaeI CTAG 2 cut(s) 57, 365
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 1 cut(s) 275
MfeI CAATTG 1 cut(s) 47
MluCI AATT 4 cut(s) 47, 201, 310, 334
MmeI TCCRAC 2 cut(s) 151, 311
MnlI CCTC 2 cut(s) 137, 153
MroXI GAANNNNTTC 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 131
MunI CAATTG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 131
NdeI CATATG 1 cut(s) 215
NdeII GATC 1 cut(s) 243
NlaIII CATG 3 cut(s) 307, 343, 363
PagI TCATGA 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 5 cut(s) 91, 211, 270, 273, 291
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PstI CTGCAG 1 cut(s) 273
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SapI GCTCTTC 1 cut(s) 258
SatI GCNGC 5 cut(s) 90, 210, 269, 272, 290
Sau3AI GATC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 131
SetI ASST 6 cut(s) 58, 78, 91, 270, 291, 329
SfcI CTRYAG 1 cut(s) 269
Sse9I AATT 4 cut(s) 47, 201, 310, 334
SsiI CCGC 1 cut(s) 316
SspMI CTAG 2 cut(s) 57, 365
StyD4I CCNGG 1 cut(s) 129
TaqI TCGA 1 cut(s) 285
TasI AATT 4 cut(s) 47, 201, 310, 334
TfiI GAWTC 1 cut(s) 227
TscAI CASTG 1 cut(s) 226
TseI GCWGC 5 cut(s) 89, 209, 268, 271, 289
TspDTI ATGAA 3 cut(s) 276, 292, 356
TspRI CASTG 1 cut(s) 226
XapI RAATTY 1 cut(s) 201
XbaI TCTAGA 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 77
XspI CTAG 2 cut(s) 57, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.