Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002048

Physical Location & Seq

Genomic Coordinates Forward (+)

9680430 .. 9686630

Gene Structure 6201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG109800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGCTACTCATCGGACATTAGATCTGACGTCCAGTCTTGAAGTGGGCTCAACAACAAACCATAACGCTGGAGATTTGAATTCATTTCATAACGCTCGATTAGTATTAACGATTGCCTTCCAGTTTCCCTTCGAGAGTAGTCTACAGGATAATGTTGCATCCATGGCACGCCAATATGTACGAAATGTCATCTCATCAGTGCAGAGTGTGATATTCAGAGATGGTTATGCTCTTGAAACTGCTGTTTTGTCAGTATATGAAAAAGTTCGACACTTGGATACTCATATTGGTCAACCTCAGTTTAGTCCTCCTACGTTTCTATCTATTCTTGTGCTGCATGAAGTGACTCCAGGTTTGGATTATTGGGGACAATTTTCAAGGGCTGGATTAATGTGCGAAGGCGATACTGGAATTGGCAGCGGTGGGCACGGTGGTTGGCGGTGTACAACGCCGTGGTCAACAATTGTTGGCTTTGTAGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009799 GO:0009855 GO:0009888 GO:0009889 GO:0009933 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010014 GO:0010051 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048507 GO:0048532 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox MEKHLA START

Protein Analysis

161

Amino Acids

17.65

Weight (kDa)

5.91

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002048)

Species	Orthologous Gene IDs
malus_domestica	MD07G1221000.v1.1
prunus_persica	Prupe.1G119300_v2.0.a1 Prupe.1G119300_v2.0.a1
pyrus_communis	pycom06g16260
rosa_chinensis	RchiOBHm_Chr2g0109271 RchiOBHm_Chr3g0449971 RchiOBHm_Chr5g0055151 RchiOBHm_Chr7g0225831
rosa_laevigata	RLG00000013375 RLG00000014560 RLG00000019363 RLG00000034972 RLG00000036177
rosa_multiflora	Rmu_sc0000820.1_g000009 Rmu_sc0010632.1_g000015 Rmu_sc0021708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326060
rosa_rugosa	Rorug04G0011200 Rorug05G0291600 Rorug06G0106800 Rorug06G0229800
rosa_samantha	Rh1AG168800 Rh1BG015000 Rh1CG156200 Rh2BG108000 Rh2BG192200 Rh2CG109800 Rh2DG571800 Rh3AG023500 Rh3CG317800 Rh3DG024000 Rh4AG069700 Rh4AG336500 Rh4CG032300 Rh4DG120200 Rh4DG339000 Rh5CG394600 Rh5DG417000 Rh5DG465600 Rh6BG052200 Rh6CG121900 Rh6DG342900 Rh6DG343000 Rh7AG365200 Rh7CG384100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	142
AciI	CCGC	2 cut(s)	420, 439
AcsI	RAATTY	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	2 cut(s)	180, 445
AgsI	TTSAA	4 cut(s)	41, 79, 236, 378
AhdI	GACNNNNNGTC	1 cut(s)	33
AjnI	CCWGG	1 cut(s)	349
ApeKI	GCWGC	2 cut(s)	334, 417
ApoI	RAATTY	1 cut(s)	79
ArsI	GACNNNNNNTTYG	2 cut(s)	337, 369
AseI	ATTAAT	1 cut(s)	389
Asp700I	GAANNNNTTC	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	429
BanII	GRGCYC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	321, 429
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	1 cut(s)	436
BciT130I	CCWGG	1 cut(s)	351
BciVI	GTATCC	1 cut(s)	271
BfmI	CTRYAG	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	271
BglII	AGATCT	1 cut(s)	22
BisI	GCNGC	2 cut(s)	335, 418
BlsI	GCNGC	2 cut(s)	336, 419
Bme1390I	CCNGG	1 cut(s)	351
BmeRI	GACNNNNNGTC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	167
BpmI	CTGGAG	2 cut(s)	90, 333
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	162, 452
Bse1I	ACTGG	3 cut(s)	33, 121, 412
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	162, 452
BseGI	GGATG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	3 cut(s)	33, 121, 412
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	2 cut(s)	321, 429
BsgI	GTGCAG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	381
Bsp1286I	GDGCHC	2 cut(s)	50, 429
Bsp1407I	TGTACA	1 cut(s)	443
Bsp143I	GATC	1 cut(s)	22
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	2 cut(s)	420, 439
BspCNI	CTCAG	1 cut(s)	310
BsrGI	TGTACA	1 cut(s)	443
BsrI	ACTGG	3 cut(s)	33, 121, 412
BssECI	CCNNGG	2 cut(s)	162, 452
BssMI	GATC	1 cut(s)	22
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	431
BstACI	GRCGYC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	2 cut(s)	162, 452
BstF5I	GGATG	1 cut(s)	158
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	1 cut(s)	349
BstSFI	CTRYAG	1 cut(s)	143
BstSLI	GKGCMC	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	321, 429
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	22
BsuI	GTATCC	1 cut(s)	271
BtgI	CCRYGG	2 cut(s)	162, 452
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	179, 444
CviAII	CATG	2 cut(s)	163, 338
CviJI	RGCY	4 cut(s)	5, 48, 383, 471
CviKI_1	RGCY	4 cut(s)	5, 48, 383, 471
CviQI	GTAC	2 cut(s)	179, 444
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
DriI	GACNNNNNGTC	1 cut(s)	33
Eam1105I	GACNNNNNGTC	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	2 cut(s)	166, 341
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	2 cut(s)	162, 337
FblI	GTMKAC	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	335, 418
FokI	GGATG	1 cut(s)	145
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	335, 418
GluI	GCNGC	2 cut(s)	335, 418
GsuI	CTGGAG	2 cut(s)	90, 333
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	166, 341
HincII	GTYRAC	2 cut(s)	293, 459
HindII	GTYRAC	2 cut(s)	293, 459
HinfI	GANTC	1 cut(s)	346
Hpy166II	GTNNAC	4 cut(s)	143, 293, 444, 459
Hpy188I	TCNGA	3 cut(s)	15, 27, 218
Hpy188III	TCNNGA	3 cut(s)	38, 133, 233
Hpy8I	GTNNAC	4 cut(s)	143, 293, 444, 459
HpyAV	CCTTC	3 cut(s)	127, 139, 392
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4IV	ACGT	2 cut(s)	29, 314
HpyCH4V	TGCA	3 cut(s)	158, 202, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	2 cut(s)	29, 314
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	2 cut(s)	166, 341
Kzo9I	GATC	1 cut(s)	22
LpnPI	CCDG	8 cut(s)	46, 54, 131, 134, 336, 363, 369, 393
Lsp1109I	GCAGC	2 cut(s)	321, 429
LweI	GCATC	1 cut(s)	167
MaeII	ACGT	2 cut(s)	29, 314
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	50, 429
MluCI	AATT	4 cut(s)	79, 371, 411, 462
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	2 cut(s)	306, 318
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	2 cut(s)	107, 389
MspA1I	CMGCKG	1 cut(s)	420
MspR9I	CCNGG	1 cut(s)	351
MunI	CAATTG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	2 cut(s)	166, 341
NmuCI	GTSAC	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	336, 419
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PshBI	ATTAAT	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	2 cut(s)	180, 445
RsaNI	GTAC	2 cut(s)	179, 444
SaqAI	TTAA	2 cut(s)	107, 389
SatI	GCNGC	2 cut(s)	335, 418
Sau3AI	GATC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	2 cut(s)	50, 429
SetI	ASST	4 cut(s)	32, 298, 317, 355
SfaNI	GCATC	1 cut(s)	167
SfcI	CTRYAG	1 cut(s)	143
Sse9I	AATT	4 cut(s)	79, 371, 411, 462
SsiI	CCGC	2 cut(s)	420, 439
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	431
TaiI	ACGT	2 cut(s)	32, 317
TaqI	TCGA	3 cut(s)	97, 132, 268
TasI	AATT	4 cut(s)	79, 371, 411, 462
TatI	WGTACW	1 cut(s)	443
Tru1I	TTAA	2 cut(s)	107, 389
Tru9I	TTAA	2 cut(s)	107, 389
TscAI	CASTG	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	2 cut(s)	334, 417
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	4 cut(s)	72, 77, 273, 354
TspRI	CASTG	1 cut(s)	204
VspI	ATTAAT	1 cut(s)	389
XapI	RAATTY	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	264
ZraI	GACGTC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.