Rh4DG339000

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002048
Physical Location & Seq
Reverse (-)
56138369 .. 56140177
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG339000.1

Sequence Viewer

Length: 384 bp
ATGTTAAGTAGGGACAAAGTTGGAGTTGAAGTAAAGGATTTGTATGCCAGAATTTTGTTTGCCATATGCAGTGGTGAATCAATACCACAAAGGATCGGAAAACTGAGAGATGAAGAGCTGCAGCCACAACTTATCGAGCTGCTAAAGGGCTTCATGAGAAATTGGTGGATAATCACCTGTTGGAACTGCATGAAACTCAAAACAAAATCATGTCTAGAGTGGGATCACTTAACCGCCCCACCATTGGAATGGTCTGCAATGACTCGCACCAGCTTGCTACTTTCAAGCTTGAAGCAGAACTTCAAAATTGGCATGCTTGCTTTGCATCATACTTTTCTTCCCAGAAAAGCATACAGTGATAGGGCAGTGAACTTGTATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

127

Amino Acids

14.77

Weight (kDa)

9.33

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 5 - 79 1.1e-13 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 234
AclWI GGATC 2 cut(s) 101, 231
AcsI RAATTY 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 4 cut(s) 29, 285, 292, 304
AluBI AGCT 4 cut(s) 118, 139, 273, 288
AluI AGCT 4 cut(s) 118, 139, 273, 288
AlwI GGATC 2 cut(s) 101, 231
ApeKI GCWGC 3 cut(s) 118, 121, 139
ApoI RAATTY 1 cut(s) 51
AsuHPI GGTGA 2 cut(s) 86, 166
BbvI GCAGC 3 cut(s) 105, 126, 133
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 119
BisI GCNGC 3 cut(s) 119, 122, 140
BlsI GCNGC 3 cut(s) 120, 123, 141
BmsI GCATC 1 cut(s) 334
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 95
BseXI GCAGC 3 cut(s) 105, 126, 133
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 93, 223
BspACI CCGC 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 96
BspHI TCATGA 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 123
BspPI GGATC 2 cut(s) 101, 231
BspQI GCTCTTC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 264
BssMI GATC 2 cut(s) 93, 223
Bst4CI ACNGT 1 cut(s) 356
Bst6I CTCTTC 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 275, 314, 318
BstDEI CTNAG 1 cut(s) 104
BstKTI GATC 2 cut(s) 96, 226
BstMBI GATC 2 cut(s) 93, 223
BstMWI GCNNNNNNNGC 1 cut(s) 322
BstNSI RCATGY 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 119
BstV1I GCAGC 3 cut(s) 105, 126, 133
BstXI CCANNNNNNTGG 1 cut(s) 249
BtsI GCAGTG 2 cut(s) 76, 372
BtsIMutI CAGTG 3 cut(s) 76, 361, 372
Cac8I GCNNGC 3 cut(s) 275, 314, 318
CciI TCATGA 1 cut(s) 153
CviAII CATG 4 cut(s) 154, 190, 210, 313
CviJI RGCY 6 cut(s) 118, 124, 139, 150, 273, 288
CviKI_1 RGCY 6 cut(s) 118, 124, 139, 150, 273, 288
DdeI CTNAG 1 cut(s) 104
DpnI GATC 2 cut(s) 95, 225
DpnII GATC 2 cut(s) 93, 223
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
FaeI CATG 4 cut(s) 157, 193, 213, 316
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FaqI GGGAC 1 cut(s) 26
FatI CATG 4 cut(s) 153, 189, 209, 312
FauNDI CATATG 1 cut(s) 65
Fnu4HI GCNGC 3 cut(s) 119, 122, 140
Fsp4HI GCNGC 3 cut(s) 119, 122, 140
FspBI CTAG 1 cut(s) 215
GluI GCNGC 3 cut(s) 119, 122, 140
Hin1II CATG 4 cut(s) 157, 193, 213, 316
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 2 cut(s) 77, 262
HphI GGTGA 2 cut(s) 86, 166
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 2 cut(s) 154, 215
Hpy8I GTNNAC 1 cut(s) 370
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 5 cut(s) 69, 121, 189, 257, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 322
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 4 cut(s) 157, 193, 213, 316
Kzo9I GATC 2 cut(s) 93, 223
LguI GCTCTTC 1 cut(s) 108
LpnPI CCDG 4 cut(s) 61, 190, 283, 355
Lsp1109I GCAGC 3 cut(s) 105, 126, 133
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 215
MalI GATC 2 cut(s) 95, 225
MboI GATC 2 cut(s) 93, 223
MboII GAAGA 2 cut(s) 125, 329
MluCI AATT 3 cut(s) 51, 160, 306
MlyI GAGTC 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 161
MseI TTAA 2 cut(s) 5, 230
MslI CAYNNNNRTG 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 322
NdeI CATATG 1 cut(s) 65
NdeII GATC 2 cut(s) 93, 223
NlaIII CATG 4 cut(s) 157, 193, 213, 316
NspI RCATGY 1 cut(s) 316
PaeI GCATGC 1 cut(s) 316
PagI TCATGA 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 3 cut(s) 120, 123, 141
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PstI CTGCAG 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 247
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 2 cut(s) 5, 230
SatI GCNGC 3 cut(s) 119, 122, 140
Sau3AI GATC 2 cut(s) 93, 223
SchI GAGTC 1 cut(s) 256
SetI ASST 5 cut(s) 120, 141, 179, 275, 290
SfaNI GCATC 1 cut(s) 334
SfcI CTRYAG 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 247
SphI GCATGC 1 cut(s) 316
Sse9I AATT 3 cut(s) 51, 160, 306
SsiI CCGC 1 cut(s) 234
SspMI CTAG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 1 cut(s) 135
TasI AATT 3 cut(s) 51, 160, 306
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 2 cut(s) 5, 230
Tru9I TTAA 2 cut(s) 5, 230
TscAI CASTG 3 cut(s) 76, 361, 372
TseI GCWGC 3 cut(s) 118, 121, 139
TspDTI ATGAA 3 cut(s) 126, 142, 206
TspRI CASTG 3 cut(s) 76, 361, 372
XapI RAATTY 1 cut(s) 51
XbaI TCTAGA 1 cut(s) 214
XceI RCATGY 1 cut(s) 316
XcmI CCANNNNNNNNNTGG 1 cut(s) 246
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.