Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002048

Physical Location & Seq

Genomic Coordinates Reverse (-)

33491401 .. 33494139

Gene Structure 2739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0291600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGATAAGCAAGTCTTCCTCATGCTTGTAAATGATTTGGAAAAGATAATGAAGGGTTCAAGAAACATGAGTATTGTTGAAATGTTGGCTATGTTTCTCTATATTTTGGGACAAGGTCAGACAAATAGGAATACACAAGAACGTTTTCAACGTTCTGATGAGAAGGTTAGTAGGTATTTCGATATAATGTTAGAGATTTTCTATAATATGGCAAAAGTGCTCATAAAGCCATTGGATCCGGAATTTAGGAGCATCCCACAAGAAATTCTAATTGATTCAAGATACATGCCTCATTTTAAGGATTGCATTGGCGCTATCGATGGTGTTCATGTCCAATCTTCAATATCTCCATGTGATCAAGTGCCATACATTGGAAGAAAAGGGATACCCACCCAAAATGTATTGGCTATTTGCAACTTCAACATGCAATTCACATTTGTATGTGCAGGGTGGGAAGGCACCGCCCATGATAGTAGAGTATTCTTATCAGCTCTACGCAATCCTCGATCGAATTTTCCTAAACCCCCAAATGGAAAATACTATGTGGTGGATGCAGGTTATCCACAAATGAAGGGTTATTTAGGACCATATAAAGGTGAGCGGTACCACCTTCCACATTTTCGTAGAGGTGATGAACCGACCGGTCATAAAGAAATATTCAATCATGCACATTCTTCACTCAGGGGTGTTATTGAGCGCACTTTTGGGGTATGGAAAAAGAAATGGAGTATTTTACGTGATATGCCACATTTTCCTTATGAAAAACAAGTGAAGATAGTTATTGCTACTATGGCTCTTCATAATTACATAAGAAGATATGCTCAACGAGATATTGATTTTGATGAAAGTGGAAATTACTCAAGTGAAGAGACTAGTGAAGAGATGGAGGATAATGAACATGATGGAGATGGTCCAGGAAGACAAGAAATGGAGGTGTTAAGAAATGCAATTGCACAAAGTCTAATGAATGCATCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPIIcoated_ERV ERGIC_N

Protein Analysis

326

Amino Acids

37.74

Weight (kDa)

6.84

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8040	PF26138	1 - 67	6.8e-19	Domain of unknown function (DUF8040)
DDE_Tnp_1	PF01609	100 - 265	6.1e-09	Transposase DDE domain
DDE_Tnp_4	PF13359	106 - 268	4.5e-22	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002048)

Species	Orthologous Gene IDs
malus_domestica	MD07G1221000.v1.1
prunus_persica	Prupe.1G119300_v2.0.a1 Prupe.1G119300_v2.0.a1
pyrus_communis	pycom06g16260
rosa_chinensis	RchiOBHm_Chr2g0109271 RchiOBHm_Chr3g0449971 RchiOBHm_Chr5g0055151 RchiOBHm_Chr7g0225831
rosa_laevigata	RLG00000013375 RLG00000014560 RLG00000019363 RLG00000034972 RLG00000036177
rosa_multiflora	Rmu_sc0000820.1_g000009 Rmu_sc0010632.1_g000015 Rmu_sc0021708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326060
rosa_rugosa	Rorug04G0011200 Rorug05G0291600 Rorug06G0106800 Rorug06G0229800
rosa_samantha	Rh1AG168800 Rh1BG015000 Rh1CG156200 Rh2BG108000 Rh2BG192200 Rh2CG109800 Rh2DG571800 Rh3AG023500 Rh3CG317800 Rh3DG024000 Rh4AG069700 Rh4AG336500 Rh4CG032300 Rh4DG120200 Rh4DG339000 Rh5CG394600 Rh5DG417000 Rh5DG465600 Rh6BG052200 Rh6CG121900 Rh6DG342900 Rh6DG343000 Rh7AG365200 Rh7CG384100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	545
Acc65I	GGTACC	1 cut(s)	603
AccB1I	GGYRCC	2 cut(s)	458, 603
AccB7I	CCANNNNNTGG	1 cut(s)	371
AccBSI	CCGCTC	1 cut(s)	601
AccIII	TCCGGA	1 cut(s)	238
AciI	CCGC	2 cut(s)	462, 601
AclI	AACGTT	2 cut(s)	142, 151
AclWI	GGATC	2 cut(s)	230, 243
AcsI	RAATTY	3 cut(s)	242, 264, 511
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	3 cut(s)	371, 530, 593
AgeI	ACCGGT	1 cut(s)	641
AgsI	TTSAA	7 cut(s)	60, 80, 149, 279, 342, 421, 661
AhlI	ACTAGT	1 cut(s)	872
AjnI	CCWGG	1 cut(s)	913
AluBI	AGCT	1 cut(s)	491
AluI	AGCT	1 cut(s)	491
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	863
AlwI	GGATC	2 cut(s)	230, 243
Aor13HI	TCCGGA	1 cut(s)	238
ApoI	RAATTY	3 cut(s)	242, 264, 511
AsiGI	ACCGGT	1 cut(s)	641
Asp700I	GAANNNNTTC	1 cut(s)	144
Asp718I	GGTACC	1 cut(s)	603
AspLEI	GCGC	2 cut(s)	314, 699
AspS9I	GGNCC	2 cut(s)	584, 911
AsuHPI	GGTGA	2 cut(s)	608, 641
AvaII	GGWCC	2 cut(s)	584, 911
BamHI	GGATCC	1 cut(s)	235
BanI	GGYRCC	2 cut(s)	458, 603
BbsI	GAAGAC	2 cut(s)	7, 925
Bbv12I	GWGCWC	1 cut(s)	222
BccI	CCATC	4 cut(s)	314, 877, 896, 902
BciT130I	CCWGG	1 cut(s)	915
BciVI	GTATCC	1 cut(s)	378
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	863
BcuI	ACTAGT	1 cut(s)	872
BfaI	CTAG	1 cut(s)	873
BfoI	RGCGCY	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	545
BfuI	GTATCC	1 cut(s)	378
Bme1390I	CCNGG	1 cut(s)	915
Bme18I	GGWCC	2 cut(s)	584, 911
BmgT120I	GGNCC	2 cut(s)	584, 911
BmiI	GGNNCC	3 cut(s)	237, 460, 605
BmrFI	CCNGG	1 cut(s)	915
BmsI	GCATC	2 cut(s)	261, 541
BpiI	GAAGAC	2 cut(s)	7, 925
BpuEI	CTTGAG	1 cut(s)	844
Bsa29I	ATCGAT	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	737
BsaWI	WCCGGW	2 cut(s)	238, 641
Bsc4I	CCNNNNNNNGG	3 cut(s)	371, 530, 593
Bse118I	RCCGGY	1 cut(s)	641
BseAI	TCCGGA	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	915
BseCI	ATCGAT	1 cut(s)	318
BseGI	GGATG	2 cut(s)	252, 556
BseLI	CCNNNNNNNGG	3 cut(s)	371, 530, 593
BseMII	CTCAG	1 cut(s)	694
BsgI	GTGCAG	1 cut(s)	465
Bsh1285I	CGRYCG	2 cut(s)	509, 642
BshNI	GGYRCC	2 cut(s)	458, 603
BshTI	ACCGGT	1 cut(s)	641
BshVI	ATCGAT	1 cut(s)	318
BsiEI	CGRYCG	2 cut(s)	509, 642
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	239, 642
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	3 cut(s)	371, 530, 593
BsmAI	GTCTC	1 cut(s)	863
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	973
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp13I	TCCGGA	1 cut(s)	238
Bsp143I	GATC	3 cut(s)	235, 355, 506
BspACI	CCGC	2 cut(s)	462, 601
BspCNI	CTCAG	1 cut(s)	693
BspDI	ATCGAT	1 cut(s)	318
BspEI	TCCGGA	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	237, 460, 605
BspMI	ACCTGC	1 cut(s)	545
BspPI	GGATC	2 cut(s)	230, 243
BspQI	GCTCTTC	1 cut(s)	801
BspT107I	GGYRCC	2 cut(s)	458, 603
BsrBI	CCGCTC	1 cut(s)	601
BsrFI	RCCGGY	1 cut(s)	641
BssAI	RCCGGY	1 cut(s)	641
BssMI	GATC	3 cut(s)	235, 355, 506
Bst2UI	CCWGG	1 cut(s)	915
Bst6I	CTCTTC	3 cut(s)	801, 861, 873
BstBAI	YACGTR	1 cut(s)	737
BstDEI	CTNAG	2 cut(s)	680, 978
BstF5I	GGATG	2 cut(s)	252, 556
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	2 cut(s)	314, 699
BstKTI	GATC	3 cut(s)	238, 358, 509
BstMAI	GTCTC	1 cut(s)	863
BstMBI	GATC	3 cut(s)	235, 355, 506
BstMCI	CGRYCG	2 cut(s)	509, 642
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 791
BstNI	CCWGG	1 cut(s)	915
BstNSI	RCATGY	2 cut(s)	289, 427
BstSCI	CCNGG	1 cut(s)	913
BstV2I	GAAGAC	2 cut(s)	7, 925
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
Bsu15I	ATCGAT	1 cut(s)	318
BsuI	GTATCC	1 cut(s)	378
BsuTUI	ATCGAT	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	252, 556
BveI	ACCTGC	1 cut(s)	545
CfoI	GCGC	2 cut(s)	314, 699
Cfr10I	RCCGGY	1 cut(s)	641
Cfr13I	GGNCC	2 cut(s)	584, 911
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	604
CspAI	ACCGGT	1 cut(s)	641
CviAII	CATG	9 cut(s)	22, 67, 286, 329, 351, 424, 467, 665, 899
CviJI	RGCY	5 cut(s)	89, 229, 407, 491, 794
CviKI_1	RGCY	5 cut(s)	89, 229, 407, 491, 794
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	2 cut(s)	680, 978
DpnI	GATC	3 cut(s)	237, 357, 508
DpnII	GATC	3 cut(s)	235, 355, 506
Eam1104I	CTCTTC	3 cut(s)	801, 861, 873
EarI	CTCTTC	3 cut(s)	801, 861, 873
Eco47I	GGWCC	2 cut(s)	584, 911
EcoRII	CCWGG	1 cut(s)	913
EcoT22I	ATGCAT	1 cut(s)	973
FaeI	CATG	9 cut(s)	25, 70, 289, 332, 354, 427, 470, 668, 902
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	9 cut(s)	21, 66, 285, 328, 350, 423, 466, 664, 898
FbaI	TGATCA	1 cut(s)	355
FokI	GGATG	2 cut(s)	239, 563
FspBI	CTAG	1 cut(s)	873
GlaI	GCGC	2 cut(s)	313, 698
HaeII	RGCGCY	1 cut(s)	315
HapII	CCGG	2 cut(s)	239, 642
HhaI	GCGC	2 cut(s)	314, 699
Hin1II	CATG	9 cut(s)	25, 70, 289, 332, 354, 427, 470, 668, 902
Hin6I	GCGC	2 cut(s)	312, 697
HinP1I	GCGC	2 cut(s)	312, 697
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	2 cut(s)	239, 642
HphI	GGTGA	2 cut(s)	608, 641
Hpy188I	TCNGA	2 cut(s)	120, 157
Hpy188III	TCNNGA	3 cut(s)	60, 239, 279
HpyAV	CCTTC	5 cut(s)	46, 157, 449, 565, 620
HpyCH4IV	ACGT	3 cut(s)	142, 151, 736
HpyCH4V	TGCA	9 cut(s)	306, 414, 427, 446, 554, 668, 947, 953, 971
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 791
HpyF3I	CTNAG	2 cut(s)	680, 978
HpySE526I	ACGT	3 cut(s)	142, 151, 736
Hsp92II	CATG	9 cut(s)	25, 70, 289, 332, 354, 427, 470, 668, 902
HspAI	GCGC	2 cut(s)	312, 697
Kpn2I	TCCGGA	1 cut(s)	238
KpnI	GGTACC	1 cut(s)	607
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	235, 355, 506
LguI	GCTCTTC	1 cut(s)	801
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	7 cut(s)	252, 432, 540, 655, 667, 900, 927
LweI	GCATC	2 cut(s)	261, 541
MaeI	CTAG	1 cut(s)	873
MaeII	ACGT	3 cut(s)	142, 151, 736
MalI	GATC	3 cut(s)	237, 357, 508
MbiI	CCGCTC	1 cut(s)	601
MboI	GATC	3 cut(s)	235, 355, 506
MfeI	CAATTG	1 cut(s)	948
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	8 cut(s)	242, 264, 270, 428, 511, 802, 853, 948
MnlI	CCTC	6 cut(s)	29, 300, 513, 620, 880, 925
Mph1103I	ATGCAT	1 cut(s)	973
MroI	TCCGGA	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	2 cut(s)	297, 938
MslI	CAYNNNNRTG	1 cut(s)	439
MspI	CCGG	2 cut(s)	239, 642
MspR9I	CCNGG	1 cut(s)	915
MunI	CAATTG	1 cut(s)	948
Mva1269I	GAATGC	1 cut(s)	973
MvaI	CCWGG	1 cut(s)	915
MwoI	GCNNNNNNNGC	2 cut(s)	226, 791
NdeII	GATC	3 cut(s)	235, 355, 506
NlaIII	CATG	9 cut(s)	25, 70, 289, 332, 354, 427, 470, 668, 902
NlaIV	GGNNCC	3 cut(s)	237, 460, 605
NsiI	ATGCAT	1 cut(s)	973
NspI	RCATGY	2 cut(s)	289, 427
PciSI	GCTCTTC	1 cut(s)	801
PcsI	WCGNNNNNNNCGW	2 cut(s)	148, 502
PctI	GAATGC	1 cut(s)	973
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	275
PflFI	GACNNNGTC	1 cut(s)	114
PflMI	CCANNNNNTGG	1 cut(s)	371
PfoI	TCCNGGA	1 cut(s)	913
PinAI	ACCGGT	1 cut(s)	641
Ple19I	CGATCG	1 cut(s)	509
Ppu21I	YACGTR	1 cut(s)	737
Psp1406I	AACGTT	2 cut(s)	142, 151
Psp6I	CCWGG	1 cut(s)	913
PspGI	CCWGG	1 cut(s)	913
PspN4I	GGNNCC	3 cut(s)	237, 460, 605
PspPI	GGNCC	2 cut(s)	584, 911
PsuI	RGATCY	1 cut(s)	235
PsyI	GACNNNGTC	1 cut(s)	114
PvuI	CGATCG	1 cut(s)	509
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
RseI	CAYNNNNRTG	1 cut(s)	439
SapI	GCTCTTC	1 cut(s)	801
SaqAI	TTAA	2 cut(s)	297, 938
Sau3AI	GATC	3 cut(s)	235, 355, 506
Sau96I	GGNCC	2 cut(s)	584, 911
ScrFI	CCNGG	1 cut(s)	915
SduI	GDGCHC	1 cut(s)	222
SfaNI	GCATC	2 cut(s)	261, 541
SinI	GGWCC	2 cut(s)	584, 911
SmiMI	CAYNNNNRTG	1 cut(s)	439
SmlI	CTYRAG	1 cut(s)	859
SmoI	CTYRAG	1 cut(s)	859
SpeI	ACTAGT	1 cut(s)	872
Sse9I	AATT	8 cut(s)	242, 264, 270, 428, 511, 802, 853, 948
SsiI	CCGC	2 cut(s)	462, 601
SspI	AATATT	1 cut(s)	657
SspMI	CTAG	1 cut(s)	873
StyD4I	CCNGG	1 cut(s)	913
TaiI	ACGT	3 cut(s)	145, 154, 739
TaqI	TCGA	4 cut(s)	180, 318, 505, 509
TasI	AATT	8 cut(s)	242, 264, 270, 428, 511, 802, 853, 948
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	2 cut(s)	297, 938
Tru9I	TTAA	2 cut(s)	297, 938
TspDTI	ATGAA	9 cut(s)	65, 317, 584, 648, 774, 788, 858, 909, 980
Tth111I	GACNNNGTC	1 cut(s)	114
Van91I	CCANNNNNTGG	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	584, 911
XapI	RAATTY	3 cut(s)	242, 264, 511
XceI	RCATGY	2 cut(s)	289, 427
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	1 cut(s)	873
Zsp2I	ATGCAT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.