Rh6BG052200

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002048
Physical Location & Seq
Reverse (-)
8456549 .. 8458591
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG052200.1

Sequence Viewer

Length: 291 bp
ATGGAGAATATGATGAACAAGCTCCGAAATTTGGACGCGTACCCCAAAATCAATGAAGATTTCTACAGCCGTACCCTCTCGGGCGGCGTCATCACTCTTGCCTCCTCCATCGTTATGCTCCTGCGATCTTTCTTTCCGACTCCGGATGAAAAGCAACAACTTCTATTGGGCTTTAGACATGCTAACAAGCAACCAAACAGCCTATTATCATCAGTTTTGTCAAGGAATAAGAAGGCATATGAGGAGATGGAAGGTGTTTGTTTCGATCTGTGGTTCATGGAGCTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

96

Amino Acids

11.11

Weight (kDa)

6.56

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERGIC_N PF13850 8 - 41 1.2e-07 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 38
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 1 cut(s) 84
AcsI RAATTY 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 2 cut(s) 41, 73
AfiI CCNNNNNNNGG 1 cut(s) 31
AflIII ACRYGT 1 cut(s) 36
AluBI AGCT 2 cut(s) 22, 283
AluI AGCT 2 cut(s) 22, 283
Ama87I CYCGRG 1 cut(s) 79
Aor13HI TCCGGA 1 cut(s) 142
ApoI RAATTY 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 79
BaeI ACNNNNGTAYC 2 cut(s) 55, 88
BccI CCATC 2 cut(s) 116, 241
BceAI ACGGC 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 64
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseAI TCCGGA 1 cut(s) 142
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 31
BseRI GAGGAG 2 cut(s) 94, 257
Bsh1236I CGCG 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 79
BsiSI CCGG 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 79
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 2 cut(s) 125, 265
BspACI CCGC 1 cut(s) 84
BspEI TCCGGA 1 cut(s) 142
BspFNI CGCG 1 cut(s) 38
BssMI GATC 2 cut(s) 125, 265
BssNI GRCGYC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 87
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 2 cut(s) 128, 268
BstMBI GATC 2 cut(s) 125, 265
BstNSI RCATGY 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 64
BstUI CGCG 1 cut(s) 38
BtsCI GGATG 1 cut(s) 151
CseI GACGC 2 cut(s) 44, 76
Csp6I GTAC 2 cut(s) 40, 72
CviAII CATG 2 cut(s) 179, 277
CviJI RGCY 5 cut(s) 22, 69, 171, 201, 283
CviKI_1 RGCY 5 cut(s) 22, 69, 171, 201, 283
CviQI GTAC 2 cut(s) 40, 72
DpnI GATC 2 cut(s) 127, 267
DpnII GATC 2 cut(s) 125, 265
Eco88I CYCGRG 1 cut(s) 79
FaeI CATG 2 cut(s) 182, 280
FaiI YATR 6 cut(s) 11, 116, 180, 238, 240, 278
FatI CATG 2 cut(s) 178, 276
FauNDI CATATG 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 85
HapII CCGG 1 cut(s) 143
HgaI GACGC 2 cut(s) 44, 76
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 2 cut(s) 182, 280
HinfI GANTC 1 cut(s) 139
HpaII CCGG 1 cut(s) 143
Hpy188I TCNGA 2 cut(s) 26, 138
Hpy188III TCNNGA 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 226, 245
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 2 cut(s) 182, 280
Kpn2I TCCGGA 1 cut(s) 142
Kzo9I GATC 2 cut(s) 125, 265
LmnI GCTCC 3 cut(s) 27, 123, 280
LpnPI CCDG 2 cut(s) 134, 156
MalI GATC 2 cut(s) 127, 267
MboI GATC 2 cut(s) 125, 265
MboII GAAGA 1 cut(s) 68
MluCI AATT 1 cut(s) 28
MluI ACGCGT 1 cut(s) 36
MlyI GAGTC 1 cut(s) 133
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 4 cut(s) 86, 112, 115, 235
MroI TCCGGA 1 cut(s) 142
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 38
NdeI CATATG 1 cut(s) 238
NdeII GATC 2 cut(s) 125, 265
NlaIII CATG 2 cut(s) 182, 280
NspI RCATGY 1 cut(s) 182
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
RsaI GTAC 2 cut(s) 41, 73
RsaNI GTAC 2 cut(s) 40, 72
RseI CAYNNNNRTG 1 cut(s) 113
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 2 cut(s) 125, 265
SchI GAGTC 1 cut(s) 133
SetI ASST 3 cut(s) 24, 256, 285
SfcI CTRYAG 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 1 cut(s) 28
SsiI CCGC 1 cut(s) 84
TaqI TCGA 1 cut(s) 264
TasI AATT 1 cut(s) 28
TauI GCSGC 1 cut(s) 87
TspDTI ATGAA 4 cut(s) 29, 69, 162, 265
XapI RAATTY 1 cut(s) 28
XceI RCATGY 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.