Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD07G1221000.v1.1 |
| prunus_persica | Prupe.1G119300_v2.0.a1 Prupe.1G119300_v2.0.a1 |
| pyrus_communis | pycom06g16260 |
| rosa_chinensis | RchiOBHm_Chr2g0109271 RchiOBHm_Chr3g0449971 RchiOBHm_Chr5g0055151 RchiOBHm_Chr7g0225831 |
| rosa_laevigata | RLG00000013375 RLG00000014560 RLG00000019363 RLG00000034972 RLG00000036177 |
| rosa_multiflora | Rmu_sc0000820.1_g000009 Rmu_sc0010632.1_g000015 Rmu_sc0021708.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00326060 |
| rosa_rugosa | Rorug04G0011200 Rorug05G0291600 Rorug06G0106800 Rorug06G0229800 |
| rosa_samantha | Rh1AG168800 Rh1BG015000 Rh1CG156200 Rh2BG108000 Rh2BG192200 Rh2CG109800 Rh2DG571800 Rh3AG023500 Rh3CG317800 Rh3DG024000 Rh4AG069700 Rh4AG336500 Rh4CG032300 Rh4DG120200 Rh4DG339000 Rh5CG394600 Rh5DG417000 Rh5DG465600 Rh6BG052200 Rh6CG121900 Rh6DG342900 Rh6DG343000 Rh7AG365200 Rh7CG384100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 127, 138, 177 |
| AclWI | GGATC | 1 cut(s) | 522 |
| AcsI | RAATTY | 1 cut(s) | 397 |
| AfaI | GTAC | 3 cut(s) | 459, 527, 535 |
| AflII | CTTAAG | 1 cut(s) | 215 |
| AflIII | ACRYGT | 1 cut(s) | 343 |
| AgsI | TTSAA | 3 cut(s) | 295, 313, 388 |
| AjiI | CACGTC | 2 cut(s) | 346, 592 |
| AluBI | AGCT | 2 cut(s) | 488, 597 |
| AluI | AGCT | 2 cut(s) | 488, 597 |
| Alw26I | GTCTC | 1 cut(s) | 264 |
| AlwI | GGATC | 1 cut(s) | 522 |
| AoxI | GGCC | 1 cut(s) | 618 |
| ApeKI | GCWGC | 1 cut(s) | 602 |
| ApoI | RAATTY | 1 cut(s) | 397 |
| AsuHPI | GGTGA | 3 cut(s) | 74, 179, 590 |
| BbvI | GCAGC | 1 cut(s) | 589 |
| BccI | CCATC | 2 cut(s) | 246, 365 |
| BceAI | ACGGC | 1 cut(s) | 232 |
| BciVI | GTATCC | 1 cut(s) | 233 |
| BcoDI | GTCTC | 1 cut(s) | 264 |
| BfaI | CTAG | 1 cut(s) | 650 |
| BfrI | CTTAAG | 1 cut(s) | 215 |
| BfuI | GTATCC | 1 cut(s) | 233 |
| BisI | GCNGC | 2 cut(s) | 127, 603 |
| BlsI | GCNGC | 2 cut(s) | 128, 604 |
| BmcAI | AGTACT | 1 cut(s) | 535 |
| BmgBI | CACGTC | 2 cut(s) | 346, 592 |
| BmiI | GGNNCC | 1 cut(s) | 48 |
| BmsI | GCATC | 1 cut(s) | 418 |
| BpmI | CTGGAG | 1 cut(s) | 62 |
| BpuEI | CTTGAG | 1 cut(s) | 514 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 173, 176, 188, 203, 206, 218 |
| Bse1I | ACTGG | 1 cut(s) | 429 |
| Bse3DI | GCAATG | 1 cut(s) | 29 |
| BseGI | GGATG | 2 cut(s) | 376, 433 |
| BseMI | GCAATG | 1 cut(s) | 29 |
| BseMII | CTCAG | 1 cut(s) | 127 |
| BseNI | ACTGG | 1 cut(s) | 429 |
| BseRI | GAGGAG | 3 cut(s) | 59, 197, 200 |
| BseXI | GCAGC | 1 cut(s) | 589 |
| BshFI | GGCC | 1 cut(s) | 620 |
| BslFI | GGGAC | 2 cut(s) | 94, 190 |
| BsmAI | GTCTC | 1 cut(s) | 264 |
| BsmFI | GGGAC | 2 cut(s) | 94, 190 |
| BsmI | GAATGC | 1 cut(s) | 591 |
| BsnI | GGCC | 1 cut(s) | 620 |
| Bsp143I | GATC | 2 cut(s) | 490, 514 |
| BspACI | CCGC | 3 cut(s) | 127, 138, 177 |
| BspANI | GGCC | 1 cut(s) | 620 |
| BspCNI | CTCAG | 1 cut(s) | 126 |
| BspHI | TCATGA | 1 cut(s) | 300 |
| BspLI | GGNNCC | 1 cut(s) | 48 |
| BspPI | GGATC | 1 cut(s) | 522 |
| BspTI | CTTAAG | 1 cut(s) | 215 |
| BsrDI | GCAATG | 1 cut(s) | 29 |
| BsrI | ACTGG | 1 cut(s) | 429 |
| BssMI | GATC | 2 cut(s) | 490, 514 |
| Bst4CI | ACNGT | 1 cut(s) | 448 |
| Bst6I | CTCTTC | 2 cut(s) | 95, 609 |
| BstAFI | CTTAAG | 1 cut(s) | 215 |
| BstC8I | GCNNGC | 1 cut(s) | 633 |
| BstDEI | CTNAG | 1 cut(s) | 113 |
| BstF5I | GGATG | 2 cut(s) | 376, 433 |
| BstKTI | GATC | 2 cut(s) | 493, 517 |
| BstMAI | GTCTC | 1 cut(s) | 264 |
| BstMBI | GATC | 2 cut(s) | 490, 514 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 46 |
| BstV1I | GCAGC | 1 cut(s) | 589 |
| BstX2I | RGATCY | 1 cut(s) | 514 |
| BstYI | RGATCY | 1 cut(s) | 514 |
| BsuI | GTATCC | 1 cut(s) | 233 |
| BsuRI | GGCC | 1 cut(s) | 620 |
| BtrI | CACGTC | 2 cut(s) | 346, 592 |
| BtsCI | GGATG | 2 cut(s) | 376, 433 |
| Cac8I | GCNNGC | 1 cut(s) | 633 |
| CciI | TCATGA | 1 cut(s) | 300 |
| Csp6I | GTAC | 3 cut(s) | 458, 526, 534 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 432, 467 |
| CviAII | CATG | 1 cut(s) | 301 |
| CviJI | RGCY | 7 cut(s) | 40, 49, 247, 488, 597, 620, 670 |
| CviKI_1 | RGCY | 7 cut(s) | 40, 49, 247, 488, 597, 620, 670 |
| CviQI | GTAC | 3 cut(s) | 458, 526, 534 |
| DdeI | CTNAG | 1 cut(s) | 113 |
| DpnI | GATC | 2 cut(s) | 492, 516 |
| DpnII | GATC | 2 cut(s) | 490, 514 |
| Eam1104I | CTCTTC | 2 cut(s) | 95, 609 |
| EarI | CTCTTC | 2 cut(s) | 95, 609 |
| Eco147I | AGGCCT | 1 cut(s) | 620 |
| EcoT22I | ATGCAT | 1 cut(s) | 256 |
| FaeI | CATG | 1 cut(s) | 304 |
| FaiI | YATR | 6 cut(s) | 252, 302, 395, 422, 497, 551 |
| FaqI | GGGAC | 2 cut(s) | 94, 190 |
| FatI | CATG | 1 cut(s) | 300 |
| FauI | CCCGC | 1 cut(s) | 170 |
| Fnu4HI | GCNGC | 2 cut(s) | 127, 603 |
| FokI | GGATG | 2 cut(s) | 383, 440 |
| Fsp4HI | GCNGC | 2 cut(s) | 127, 603 |
| FspBI | CTAG | 1 cut(s) | 650 |
| GluI | GCNGC | 2 cut(s) | 127, 603 |
| GsuI | CTGGAG | 1 cut(s) | 62 |
| HaeIII | GGCC | 1 cut(s) | 620 |
| Hin1II | CATG | 1 cut(s) | 304 |
| HincII | GTYRAC | 2 cut(s) | 364, 444 |
| HindII | GTYRAC | 2 cut(s) | 364, 444 |
| HinfI | GANTC | 5 cut(s) | 95, 203, 272, 329, 384 |
| HphI | GGTGA | 3 cut(s) | 74, 179, 590 |
| Hpy166II | GTNNAC | 2 cut(s) | 364, 444 |
| Hpy188I | TCNGA | 1 cut(s) | 269 |
| Hpy188III | TCNNGA | 5 cut(s) | 58, 301, 313, 333, 415 |
| Hpy8I | GTNNAC | 2 cut(s) | 364, 444 |
| Hpy99I | CGWCG | 1 cut(s) | 152 |
| HpyAV | CCTTC | 4 cut(s) | 155, 167, 193, 575 |
| HpyCH4III | ACNGT | 1 cut(s) | 448 |
| HpyCH4IV | ACGT | 4 cut(s) | 345, 360, 366, 591 |
| HpyCH4V | TGCA | 2 cut(s) | 254, 589 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 46 |
| HpyF3I | CTNAG | 1 cut(s) | 113 |
| HpySE526I | ACGT | 4 cut(s) | 345, 360, 366, 591 |
| Hsp92II | CATG | 1 cut(s) | 304 |
| Kzo9I | GATC | 2 cut(s) | 490, 514 |
| LmnI | GCTCC | 2 cut(s) | 46, 480 |
| LpnPI | CCDG | 8 cut(s) | 26, 87, 215, 302, 318, 410, 428, 561 |
| Lsp1109I | GCAGC | 1 cut(s) | 589 |
| LweI | GCATC | 1 cut(s) | 418 |
| MaeI | CTAG | 1 cut(s) | 650 |
| MaeII | ACGT | 4 cut(s) | 345, 360, 366, 591 |
| MaeIII | GTNAC | 3 cut(s) | 167, 356, 377 |
| MalI | GATC | 2 cut(s) | 492, 516 |
| MboI | GATC | 2 cut(s) | 490, 514 |
| MboII | GAAGA | 2 cut(s) | 82, 626 |
| MflI | RGATCY | 1 cut(s) | 514 |
| MluCI | AATT | 2 cut(s) | 397, 474 |
| MlyI | GAGTC | 3 cut(s) | 89, 212, 266 |
| MmeI | TCCRAC | 1 cut(s) | 174 |
| Mph1103I | ATGCAT | 1 cut(s) | 256 |
| MseI | TTAA | 2 cut(s) | 216, 504 |
| MspCI | CTTAAG | 1 cut(s) | 215 |
| Mva1269I | GAATGC | 1 cut(s) | 591 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 46 |
| NdeII | GATC | 2 cut(s) | 490, 514 |
| NlaIII | CATG | 1 cut(s) | 304 |
| NlaIV | GGNNCC | 1 cut(s) | 48 |
| NmuCI | GTSAC | 1 cut(s) | 167 |
| NsiI | ATGCAT | 1 cut(s) | 256 |
| PagI | TCATGA | 1 cut(s) | 300 |
| PceI | AGGCCT | 1 cut(s) | 620 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 156 |
| PctI | GAATGC | 1 cut(s) | 591 |
| PfeI | GAWTC | 2 cut(s) | 329, 384 |
| PkrI | GCNGC | 2 cut(s) | 128, 604 |
| PleI | GAGTC | 3 cut(s) | 89, 211, 266 |
| PpsI | GAGTC | 3 cut(s) | 89, 211, 266 |
| PspN4I | GGNNCC | 1 cut(s) | 48 |
| PsuI | RGATCY | 1 cut(s) | 514 |
| RsaI | GTAC | 3 cut(s) | 459, 527, 535 |
| RsaNI | GTAC | 3 cut(s) | 458, 526, 534 |
| SaqAI | TTAA | 2 cut(s) | 216, 504 |
| SatI | GCNGC | 2 cut(s) | 127, 603 |
| Sau3AI | GATC | 2 cut(s) | 490, 514 |
| ScaI | AGTACT | 1 cut(s) | 535 |
| SchI | GAGTC | 3 cut(s) | 89, 212, 266 |
| SfaNI | GCATC | 1 cut(s) | 418 |
| SmlI | CTYRAG | 2 cut(s) | 215, 529 |
| SmoI | CTYRAG | 2 cut(s) | 215, 529 |
| Sse9I | AATT | 2 cut(s) | 397, 474 |
| SseBI | AGGCCT | 1 cut(s) | 620 |
| SsiI | CCGC | 3 cut(s) | 127, 138, 177 |
| SspMI | CTAG | 1 cut(s) | 650 |
| StuI | AGGCCT | 1 cut(s) | 620 |
| TaaI | ACNGT | 1 cut(s) | 448 |
| TaiI | ACGT | 4 cut(s) | 348, 363, 369, 594 |
| TaqI | TCGA | 4 cut(s) | 30, 57, 93, 147 |
| TasI | AATT | 2 cut(s) | 397, 474 |
| TatI | WGTACW | 3 cut(s) | 457, 525, 533 |
| TauI | GCSGC | 1 cut(s) | 129 |
| TfiI | GAWTC | 2 cut(s) | 329, 384 |
| Tru1I | TTAA | 2 cut(s) | 216, 504 |
| Tru9I | TTAA | 2 cut(s) | 216, 504 |
| TseFI | GTSAC | 1 cut(s) | 167 |
| TseI | GCWGC | 1 cut(s) | 602 |
| Tsp45I | GTSAC | 1 cut(s) | 167 |
| TspDTI | ATGAA | 3 cut(s) | 17, 289, 410 |
| TspGWI | ACGGA | 1 cut(s) | 165 |
| Vha464I | CTTAAG | 1 cut(s) | 215 |
| XapI | RAATTY | 1 cut(s) | 397 |
| XspI | CTAG | 1 cut(s) | 650 |
| ZrmI | AGTACT | 1 cut(s) | 535 |
| Zsp2I | ATGCAT | 1 cut(s) | 256 |