Rh2BG192200

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002048
Physical Location & Seq
Reverse (-)
17359621 .. 17360308
688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG192200.1

Sequence Viewer

Length: 372 bp
ATGGTACCACAATTTGCAGGTATGAACAGAAAATGGCAATGTGTCATACGGATACTGCAAGTTTCATGGCACCCTTGCAGTGATACTCATCTGGGAATTCTTTCTTCTGATTCAGTTTTCAGCGGGTTAATTGTTGCAACCTTCATATCTCCAACATTGCAGCTTCATGAGAAATTGGTGGATAATCACCTGTTGGAACTGCATGAAACTCAAATCAAAATCATGTCTAGAGTGAGATCACTTAACCGCCCCACCATTGGAATGGTCTGCAATGACTCGCACCAGCTTGCTACTTTCAAGCTTGAAGCCGAACTTCAAAATTGGCATGCTTGCTTTGTATCATACTTTTCTTCCCAGAAAAGGGTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

123

Amino Acids

14.12

Weight (kDa)

8.46

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 63 - 120 3e-12 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 8
Acc65I GGTACC 1 cut(s) 4
AccB1I GGYRCC 2 cut(s) 4, 69
AciI CCGC 2 cut(s) 123, 247
AcsI RAATTY 1 cut(s) 96
AfaI GTAC 2 cut(s) 6, 366
AfiI CCNNNNNNNGG 3 cut(s) 257, 360, 361
AgsI TTSAA 3 cut(s) 298, 305, 317
AluBI AGCT 3 cut(s) 163, 286, 301
AluI AGCT 3 cut(s) 163, 286, 301
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 96
Asp700I GAANNNNTTC 1 cut(s) 100
Asp718I GGTACC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 179
BanI GGYRCC 2 cut(s) 4, 69
BbvI GCAGC 1 cut(s) 172
BciVI GTATCC 1 cut(s) 45
BfaI CTAG 1 cut(s) 228
BfuAI ACCTGC 1 cut(s) 8
BfuI GTATCC 1 cut(s) 45
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
BmiI GGNNCC 2 cut(s) 6, 71
BsaBI GATNNNNATC 1 cut(s) 87
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 360, 361
Bse3DI GCAATG 3 cut(s) 44, 155, 277
Bse8I GATNNNNATC 1 cut(s) 87
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 3 cut(s) 257, 360, 361
BseMI GCAATG 3 cut(s) 44, 155, 277
BseXI GCAGC 1 cut(s) 172
BshNI GGYRCC 2 cut(s) 4, 69
BslI CCNNNNNNNGG 3 cut(s) 257, 360, 361
Bsp143I GATC 1 cut(s) 236
BspACI CCGC 2 cut(s) 123, 247
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 2 cut(s) 6, 71
BspMI ACCTGC 1 cut(s) 8
BspT107I GGYRCC 2 cut(s) 4, 69
BsrDI GCAATG 3 cut(s) 44, 155, 277
BssMI GATC 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 369
BstC8I GCNNGC 3 cut(s) 288, 327, 331
BstKTI GATC 1 cut(s) 239
BstMBI GATC 1 cut(s) 236
BstNSI RCATGY 1 cut(s) 329
BstV1I GCAGC 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 262
BsuI GTATCC 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 85
BveI ACCTGC 1 cut(s) 8
Cac8I GCNNGC 3 cut(s) 288, 327, 331
CciI TCATGA 1 cut(s) 166
Csp6I GTAC 2 cut(s) 5, 365
CviAII CATG 5 cut(s) 66, 167, 203, 223, 326
CviJI RGCY 4 cut(s) 163, 286, 301, 308
CviKI_1 RGCY 4 cut(s) 163, 286, 301, 308
CviQI GTAC 2 cut(s) 5, 365
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 96
FaeI CATG 5 cut(s) 69, 170, 206, 226, 329
FaiI YATR 9 cut(s) 23, 47, 67, 146, 168, 204, 224, 327, 343
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FatI CATG 5 cut(s) 65, 166, 202, 222, 325
FauI CCCGC 1 cut(s) 116
Fnu4HI GCNGC 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 1 cut(s) 228
GluI GCNGC 1 cut(s) 161
Hin1II CATG 5 cut(s) 69, 170, 206, 226, 329
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 2 cut(s) 110, 275
HphI GGTGA 1 cut(s) 179
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 2 cut(s) 167, 228
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 369
HpyCH4V TGCA 7 cut(s) 17, 58, 78, 137, 160, 202, 270
Hsp92II CATG 5 cut(s) 69, 170, 206, 226, 329
KpnI GGTACC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 236
LpnPI CCDG 5 cut(s) 3, 77, 203, 296, 368
Lsp1109I GCAGC 1 cut(s) 172
MaeI CTAG 1 cut(s) 228
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MboII GAAGA 2 cut(s) 96, 342
MluCI AATT 5 cut(s) 11, 96, 129, 173, 319
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 2 cut(s) 174, 176
MroXI GAANNNNTTC 1 cut(s) 100
MseI TTAA 2 cut(s) 128, 243
MslI CAYNNNNRTG 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 123
NdeII GATC 1 cut(s) 236
NlaIII CATG 5 cut(s) 69, 170, 206, 226, 329
NlaIV GGNNCC 2 cut(s) 6, 71
NspI RCATGY 1 cut(s) 329
PaeI GCATGC 1 cut(s) 329
PagI TCATGA 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 162
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 6, 71
RsaI GTAC 2 cut(s) 6, 366
RsaNI GTAC 2 cut(s) 5, 365
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 2 cut(s) 128, 243
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 1 cut(s) 236
SchI GAGTC 1 cut(s) 269
SetI ASST 6 cut(s) 22, 143, 165, 192, 288, 303
SmiMI CAYNNNNRTG 1 cut(s) 260
SphI GCATGC 1 cut(s) 329
Sse9I AATT 5 cut(s) 11, 96, 129, 173, 319
SsiI CCGC 2 cut(s) 123, 247
SspMI CTAG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 369
TasI AATT 5 cut(s) 11, 96, 129, 173, 319
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 2 cut(s) 128, 243
Tru9I TTAA 2 cut(s) 128, 243
TscAI CASTG 1 cut(s) 85
TseI GCWGC 1 cut(s) 160
TspDTI ATGAA 5 cut(s) 38, 54, 133, 155, 219
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 1 cut(s) 85
XapI RAATTY 1 cut(s) 96
XbaI TCTAGA 1 cut(s) 227
XceI RCATGY 1 cut(s) 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 100
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.