Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000820.1

Orthogroup ID

OG0002048

Physical Location & Seq

Genomic Coordinates Forward (+)

39878 .. 45696

Gene Structure 5819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000820.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atgcaggtaaagttgctaagtcggttgcgttctccatattttctttcgttgcttgggtattgttcagataacagtcgtaagctgttggtgtatgagtttatggcaaatggtggattgcaggaacatttgtatcctgtcagtggtggtcctaatgccctctccacaaacttagactgggaaacccggttgagaatagctcttgaagctgcgaaagctggaggttatgtttccaccagagtgttgggcacacagggatatgttgcccctgagtatgcattaacagggcatctgacaactaaatcagatgtgtacagttatggggttgtgctgttggaattgctaacaggcagagttccagttgatatgaagagaccccctggagaaggtgttctcgtttcttgggtgggtgttctagttctatatgaaaaagttcgacacttggatactcatattggtcaacctcagtttagtcctcctacatttctatctattcctgtgatgcatgaagtgactccagtcggatatcttattgcaccgccagaaggaaaccaattggacctcagagtgattggaaggggcagtcggagccttgctcccaccggcaacactatgatcaccgccagctccagcttgaacaactggcagaccgtcgacgccgagatgagagtggtgcggcatcggcagcaccactggggtttcagactggctcaccaccaaagtctgtggcttcaccatcatttgctgggtcgccaacccggcggcatacatgctctcaagaaagttatttatctcggcacggcccatcacttctgcgaaagcatcgcggctcgctttgttacccggcggagagtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010065 GO:0010068 GO:0010154 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0042335 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0048316 GO:0048507 GO:0048508 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

284

Amino Acids

31.68

Weight (kDa)

9.75

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002048)

Species	Orthologous Gene IDs
malus_domestica	MD07G1221000.v1.1
prunus_persica	Prupe.1G119300_v2.0.a1 Prupe.1G119300_v2.0.a1
pyrus_communis	pycom06g16260
rosa_chinensis	RchiOBHm_Chr2g0109271 RchiOBHm_Chr3g0449971 RchiOBHm_Chr5g0055151 RchiOBHm_Chr7g0225831
rosa_laevigata	RLG00000013375 RLG00000014560 RLG00000019363 RLG00000034972 RLG00000036177
rosa_multiflora	Rmu_sc0000820.1_g000009 Rmu_sc0010632.1_g000015 Rmu_sc0021708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326060
rosa_rugosa	Rorug04G0011200 Rorug05G0291600 Rorug06G0106800 Rorug06G0229800
rosa_samantha	Rh1AG168800 Rh1BG015000 Rh1CG156200 Rh2BG108000 Rh2BG192200 Rh2CG109800 Rh2DG571800 Rh3AG023500 Rh3CG317800 Rh3DG024000 Rh4AG069700 Rh4AG336500 Rh4CG032300 Rh4DG120200 Rh4DG339000 Rh5CG394600 Rh5DG417000 Rh5DG465600 Rh6BG052200 Rh6CG121900 Rh6DG342900 Rh6DG343000 Rh7AG365200 Rh7CG384100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	651
AccII	CGCG	1 cut(s)	824
AciI	CCGC	6 cut(s)	536, 618, 673, 759, 824, 844
AcyI	GRCGYC	1 cut(s)	654
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	140, 383, 542
AgsI	TTSAA	2 cut(s)	203, 634
AjnI	CCWGG	1 cut(s)	376
AleI	CACNNNNGTG	1 cut(s)	236
AloI	GAACNNNNNNTCC	2 cut(s)	372, 404
AluBI	AGCT	6 cut(s)	82, 197, 206, 215, 624, 630
AluI	AGCT	6 cut(s)	82, 197, 206, 215, 624, 630
Alw26I	GTCTC	1 cut(s)	364
AoxI	GGCC	1 cut(s)	798
ApeKI	GCWGC	2 cut(s)	206, 682
Asp700I	GAANNNNTTC	2 cut(s)	387, 429
AspS9I	GGNCC	3 cut(s)	146, 556, 799
AsuC2I	CCSGG	3 cut(s)	184, 756, 841
AsuHPI	GGTGA	3 cut(s)	607, 701, 722
AvaII	GGWCC	2 cut(s)	146, 556
BaeGI	GKGCMC	1 cut(s)	248
BaeI	ACNNNNGTAYC	2 cut(s)	113, 146
BbvI	GCAGC	2 cut(s)	193, 694
BccI	CCATC	2 cut(s)	741, 810
BceAI	ACGGC	1 cut(s)	813
BciT130I	CCWGG	1 cut(s)	378
BciVI	GTATCC	2 cut(s)	141, 436
BclI	TGATCA	1 cut(s)	612
BcnI	CCSGG	3 cut(s)	184, 756, 841
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	1 cut(s)	413
BfuI	GTATCC	2 cut(s)	141, 436
BglI	GCCNNNNNGGC	1 cut(s)	756
BisI	GCNGC	5 cut(s)	207, 674, 683, 760, 825
BlsI	GCNGC	5 cut(s)	208, 675, 684, 761, 826
Bme1390I	CCNGG	4 cut(s)	184, 378, 756, 841
Bme18I	GGWCC	2 cut(s)	146, 556
BmgT120I	GGNCC	3 cut(s)	146, 556, 799
BmiI	GGNNCC	1 cut(s)	587
BmrFI	CCNGG	4 cut(s)	184, 378, 756, 841
BmrI	ACTGGG	2 cut(s)	184, 700
BmsI	GCATC	4 cut(s)	295, 489, 685, 828
BmuI	ACTGGG	2 cut(s)	184, 700
BoxI	GACNNNNGTC	1 cut(s)	515
BplI	GAGNNNNNCTC	4 cut(s)	181, 213, 577, 609
BpmI	CTGGAG	4 cut(s)	237, 399, 498, 610
BpuEI	CTTGAG	1 cut(s)	758
BpuMI	CCSGG	3 cut(s)	184, 756, 841
BsaHI	GRCGYC	1 cut(s)	654
BsaI	GGTCTC	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	376
BsaXI	ACNNNNNCTCC	4 cut(s)	210, 240, 372, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 383, 542
Bse118I	RCCGGY	1 cut(s)	599
Bse1I	ACTGG	6 cut(s)	179, 356, 515, 644, 695, 708
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	376
BseLI	CCNNNNNNNGG	3 cut(s)	140, 383, 542
BseMII	CTCAG	3 cut(s)	258, 476, 574
BseNI	ACTGG	6 cut(s)	179, 356, 515, 644, 695, 708
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	193, 694
BseYI	CCCAGC	1 cut(s)	742
Bsh1236I	CGCG	1 cut(s)	824
BshFI	GGCC	1 cut(s)	800
BsiSI	CCGG	4 cut(s)	184, 600, 756, 841
BslI	CCNNNNNNNGG	3 cut(s)	140, 383, 542
BsmAI	GTCTC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	800
Bso31I	GGTCTC	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	612
BspACI	CCGC	6 cut(s)	536, 618, 673, 759, 824, 844
BspANI	GGCC	1 cut(s)	800
BspCNI	CTCAG	3 cut(s)	259, 475, 573
BspFNI	CGCG	1 cut(s)	824
BspLI	GGNNCC	1 cut(s)	587
BspTNI	GGTCTC	1 cut(s)	364
BsrFI	RCCGGY	1 cut(s)	599
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	6 cut(s)	179, 356, 515, 644, 695, 708
BssAI	RCCGGY	1 cut(s)	599
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	1 cut(s)	612
BssNI	GRCGYC	1 cut(s)	654
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	3 cut(s)	74, 314, 649
Bst6I	CTCTTC	1 cut(s)	362
BstACI	GRCGYC	1 cut(s)	654
BstAUI	TGTACA	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	622, 829
BstDEI	CTNAG	5 cut(s)	17, 169, 267, 462, 560
BstENI	CCTNNNNNAGG	1 cut(s)	381
BstFNI	CGCG	1 cut(s)	824
BstKTI	GATC	1 cut(s)	615
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	612
BstMWI	GCNNNNNNNGC	6 cut(s)	203, 212, 585, 679, 682, 756
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	770
BstPAI	GACNNNNGTC	1 cut(s)	515
BstSCI	CCNGG	4 cut(s)	182, 376, 754, 839
BstSLI	GKGCMC	1 cut(s)	248
BstUI	CGCG	1 cut(s)	824
BstV1I	GCAGC	2 cut(s)	193, 694
BstXI	CCANNNNNNTGG	1 cut(s)	241
BsuI	GTATCC	2 cut(s)	141, 436
BsuRI	GGCC	1 cut(s)	800
BtgZI	GCGATG	1 cut(s)	805
BtsIMutI	CAGTG	2 cut(s)	145, 688
Cac8I	GCNNGC	2 cut(s)	622, 829
Cfr10I	RCCGGY	1 cut(s)	599
Cfr13I	GGNCC	3 cut(s)	146, 556, 799
CseI	GACGC	1 cut(s)	662
Csp6I	GTAC	1 cut(s)	310
CspCI	CAANNNNNGTGG	2 cut(s)	704, 739
CviAII	CATG	2 cut(s)	503, 767
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	5 cut(s)	17, 169, 267, 462, 560
DpnI	GATC	1 cut(s)	614
DpnII	GATC	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Eco31I	GGTCTC	1 cut(s)	364
Eco32I	GATATC	1 cut(s)	524
Eco47I	GGWCC	2 cut(s)	146, 556
EcoNI	CCTNNNNNAGG	1 cut(s)	381
EcoRII	CCWGG	1 cut(s)	376
EcoRV	GATATC	1 cut(s)	524
EcoT22I	ATGCAT	2 cut(s)	277, 504
FaeI	CATG	2 cut(s)	506, 770
FatI	CATG	2 cut(s)	502, 766
FbaI	TGATCA	1 cut(s)	612
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	5 cut(s)	207, 674, 683, 760, 825
Fsp4HI	GCNGC	5 cut(s)	207, 674, 683, 760, 825
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	5 cut(s)	207, 674, 683, 760, 825
GsaI	CCCAGC	1 cut(s)	746
GsuI	CTGGAG	4 cut(s)	237, 399, 498, 610
HaeIII	GGCC	1 cut(s)	800
HapII	CCGG	4 cut(s)	184, 600, 756, 841
HgaI	GACGC	1 cut(s)	662
Hin1I	GRCGYC	1 cut(s)	654
Hin1II	CATG	2 cut(s)	506, 770
HincII	GTYRAC	2 cut(s)	458, 652
HindII	GTYRAC	2 cut(s)	458, 652
HinfI	GANTC	2 cut(s)	511, 849
HpaII	CCGG	4 cut(s)	184, 600, 756, 841
HphI	GGTGA	3 cut(s)	607, 701, 722
Hpy166II	GTNNAC	3 cut(s)	310, 458, 652
Hpy188I	TCNGA	7 cut(s)	67, 291, 304, 521, 563, 585, 701
Hpy188III	TCNNGA	2 cut(s)	200, 775
Hpy8I	GTNNAC	3 cut(s)	310, 458, 652
Hpy99I	CGWCG	2 cut(s)	653, 656
HpyAV	CCTTC	3 cut(s)	377, 536, 567
HpyCH4III	ACNGT	3 cut(s)	74, 314, 649
HpyCH4V	TGCA	5 cut(s)	4, 118, 275, 502, 533
HpyF10VI	GCNNNNNNNGC	6 cut(s)	203, 212, 585, 679, 682, 756
HpyF3I	CTNAG	5 cut(s)	17, 169, 267, 462, 560
Hsp92I	GRCGYC	1 cut(s)	654
Hsp92II	CATG	2 cut(s)	506, 770
Ksp22I	TGATCA	1 cut(s)	612
Kzo9I	GATC	1 cut(s)	612
LmnI	GCTCC	3 cut(s)	585, 598, 629
Lsp1109I	GCAGC	2 cut(s)	193, 694
LweI	GCATC	4 cut(s)	295, 489, 685, 828
MaeI	CTAG	1 cut(s)	413
MaeIII	GTNAC	2 cut(s)	508, 835
MalI	GATC	1 cut(s)	614
MboI	GATC	1 cut(s)	612
MboII	GAAGA	1 cut(s)	379
MfeI	CAATTG	1 cut(s)	551
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	2 cut(s)	335, 551
MlyI	GAGTC	1 cut(s)	505
MmeI	TCCRAC	3 cut(s)	312, 499, 563
MnlI	CCTC	5 cut(s)	167, 212, 471, 483, 569
Mph1103I	ATGCAT	2 cut(s)	277, 504
MroXI	GAANNNNTTC	2 cut(s)	387, 429
MseI	TTAA	1 cut(s)	278
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	4 cut(s)	184, 600, 756, 841
MspR9I	CCNGG	4 cut(s)	184, 378, 756, 841
MunI	CAATTG	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	824
MwoI	GCNNNNNNNGC	6 cut(s)	203, 212, 585, 679, 682, 756
NciI	CCSGG	3 cut(s)	184, 756, 841
NdeII	GATC	1 cut(s)	612
NlaIII	CATG	2 cut(s)	506, 770
NlaIV	GGNNCC	1 cut(s)	587
NmeAIII	GCCGAG	2 cut(s)	682, 771
NmuCI	GTSAC	1 cut(s)	508
NsiI	ATGCAT	2 cut(s)	277, 504
NspI	RCATGY	1 cut(s)	770
OliI	CACNNNNGTG	1 cut(s)	236
PdmI	GAANNNNTTC	2 cut(s)	387, 429
PkrI	GCNGC	5 cut(s)	208, 675, 684, 761, 826
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PshAI	GACNNNNGTC	1 cut(s)	515
Psp6I	CCWGG	1 cut(s)	376
PspFI	CCCAGC	1 cut(s)	742
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	587
PspPI	GGNCC	3 cut(s)	146, 556, 799
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	236
SalI	GTCGAC	1 cut(s)	650
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	5 cut(s)	207, 674, 683, 760, 825
Sau3AI	GATC	1 cut(s)	612
Sau96I	GGNCC	3 cut(s)	146, 556, 799
SchI	GAGTC	1 cut(s)	505
ScrFI	CCNGG	4 cut(s)	184, 378, 756, 841
SduI	GDGCHC	1 cut(s)	248
SfaNI	GCATC	4 cut(s)	295, 489, 685, 828
SgrDI	CGTCGACG	1 cut(s)	650
SinI	GGWCC	2 cut(s)	146, 556
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
Sse9I	AATT	2 cut(s)	335, 551
SsiI	CCGC	6 cut(s)	536, 618, 673, 759, 824, 844
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	4 cut(s)	182, 376, 754, 839
TaaI	ACNGT	3 cut(s)	74, 314, 649
TaqI	TCGA	2 cut(s)	433, 651
TasI	AATT	2 cut(s)	335, 551
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	3 cut(s)	676, 762, 827
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	2 cut(s)	145, 695
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	2 cut(s)	206, 682
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	3 cut(s)	380, 438, 519
TspRI	CASTG	2 cut(s)	145, 695
VpaK11BI	GGWCC	2 cut(s)	146, 556
XagI	CCTNNNNNAGG	1 cut(s)	381
XceI	RCATGY	1 cut(s)	770
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	651
XmnI	GAANNNNTTC	2 cut(s)	387, 429
XspI	CTAG	1 cut(s)	413
Zsp2I	ATGCAT	2 cut(s)	277, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.