Rorug06G0106800

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002048
Physical Location & Seq
Reverse (-)
14452821 .. 14534939
82119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0106800.1

Sequence Viewer

Length: 2265 bp
ATGGATCAGTTTGCGGTGAAGGTGGAGGAGGCGAGGCCGGCCGCTGATGGGAGGCCGTCGGCGGGGCCGGTGTATCGGAGCATTTATGCTAAAGATGGGCTGCTGGAGTTGCCGGAGGGGTTGGAGTCACCGTGGCAGTTCCTCAGTGACTCTGCTAAGAGGAACCCAAGCGGTCGAATGCTTGGTCAACGCCAAGTCAACGAGAAGAAGGCGGGTCCATATGTGTGGAGTACATATCAAGAGGTCTATGATGCAGCCATTCGTATGGGTTCAGCCATCAGAAGCCGTGGTGTCAATCCTGGAGATCGTTGTGGTATATATGGATCAAATTGCTCCCAATGGATTATTGCAATGGAGGCCTGTAACAGCCATGCCATTACATACGTTCCACTTTATGACACCCTCGGTGCTAATGCAGTTGAGTTCATCATCAACCATGCTGAAGTTTCAATAGCTTTTGTTCAAGAGAACAAGATCCCTGCTATTATATCATGCCTTCCAAACTGTTCTACGCATTTAAAAACAATTGTCAGCTTCACGAATGTTTCTAGCACTCAAAAGAAGGAAGCAGAAGAACTGGGGGTATCTTGCTTTTCGTGGGAGGAATTCTTTCAGTTGGGAAATTCAGATTATGAACTACCTCAAAAACAGAGGACTGCTGTTTGCACAATAATGTATACAAGTGGAACGACTGGAGAACCAAAAGGCGTAATCATTACTAATGCGGCATTAATGTCAGAAGTGTTGGCAACAGACCATATACTTTTCCTAACAGATAGAGTGTGTACGGAAGAAGATTCATATTTTTCGTTTCTCCCGTTGGCCCATATATATGACCAAATAATCGAGAGCTATTGCATCTACAAGGGATCTTCAATAGGCTTCTGGCGAGGCGATGTCAGGTTTTTACTGGACGACCTTCAGGAACTAAAGCCTACTATGTTTTGTGGGGTTCCTCGAGTTTATGATCGTATATACACTGGTATTGCTAGTAAAGTTTTATCTGGTGGTGTGCTGAGGAAGACCCTTTTCCAGTATGCATATAACTACAAATTGTCAAATCTGGAGAAGGGTTTACCACAAGAAAAAGCGGCACCTCTCTTGGACAAGCTTGTATTTGACAAGATAAAACAAGCATTAGGAGGACGAGTTCGTATAATGTTGTCTGGTGCTGCGCCTTTGCCCAGGCATGTGGAGGAATTTTTGAGGGTCACCAGCTGCAGCACTTTATCACAAGGATATGGCCTTACTGAAAGCTGTGGTGGCTGTTTTACGTCCATTGGCAATGTTTATCCTATGATTGGGACTGTGGGTGTCCCCTTGACAACTATTGAAGCACGGCTTGAGTCGGTCCCAGAACTGGGATATGATGCACTTTCTAGTGTGCCACGTGGAGAGATTTGCCTAAGAGGAAAAACCTTGTTTTCTGGTTACCACAAGCGACAAGATCTCACTGAAGAAGTCCTTATTGATGGGTGGTTCCATACAGGTGATATTGGAGAATGGCAGCCTAATGGAGCAATGAAAGTTATAGACAGGAAAAAGAACATATTTAAACTGTCTCAAGGTGAATATGTTGCTGTGGAAAGCATTGAAAGCATATACTTGCAATGCCCCATTATCACATCAATTTGGGTTTATGGGAACAGCTTCGAGTCATTTCTTGTTGCTGTGGTTGTTCCCGAGAGAAAGGCCTTGGAGGACTGGGCAGCTGAGCATCATTTGACTGATGACTACAAATCATTGTGTCAAAATATGAAGGCAAGAAAATACATTTTGGATGAGCTCAATAGTATGGGTCAGAAACAGCAACTTCGAGGGTTTGAGTTGTTAAAAGCAGTTCATTTGGAACCAAACCCCTTTGACATAGAGAGGGATCTCATGACTCCAACTTTCAAACTGAAAAGACCCCAATTACTCAAATATTACAAGGACCGAGTTGAAAAACTATATAGTGAAGCAAAGGGTGGAAAGTCCAAGAAACAATGCTTGAAGTCAATTGCAGTTGCTTTCACCAATGCTCTTTCGGTGGTGACTGGACTGGCACGTAGTTTCGCTTCATCTTACACGAAAAACTCTGTGCACCTACTGAGAGCCTTGTCCTCTTCTGCCCCTTCTTCATTTCACCAGCAACCAAACTCTGTTCCTGCTCTTTCCACCCGTTCATACACATACCTGTGTTCCTGCTTTTGCCACTTTACCTTTTCTTCTTCTCCATTTCTTGGTAGTTTCGTTTCATCTTACACTCCTTTGACTTCACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

754

Amino Acids

84.04

Weight (kDa)

7.73

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 68 - 479 2.8e-78 AMP-binding enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1093
AccB7I CCANNNNNTGG 1 cut(s) 2222
AccI GTMKAC 1 cut(s) 677
AciI CCGC 7 cut(s) 14, 42, 62, 171, 212, 725, 1091
AclWI GGATC 5 cut(s) 12, 331, 469, 877, 1884
AcoI YGGCCR 1 cut(s) 39
AcsI RAATTY 3 cut(s) 605, 622, 1199
AcuI CTGAAG 3 cut(s) 462, 905, 1476
AcvI CACGTG 1 cut(s) 1391
AfaI GTAC 2 cut(s) 232, 787
AfiI CCNNNNNNNGG 6 cut(s) 48, 62, 1301, 1360, 1361, 2222
AgsI TTSAA 8 cut(s) 450, 464, 876, 1334, 1595, 1897, 1943, 1993
AjnI CCWGG 2 cut(s) 298, 1184
AloI GAACNNNNNNTCC 2 cut(s) 1134, 1166
AluBI AGCT 9 cut(s) 455, 534, 852, 1111, 1218, 1257, 1650, 1712, 1786
AluI AGCT 9 cut(s) 455, 534, 852, 1111, 1218, 1257, 1650, 1712, 1786
Alw21I GWGCWC 2 cut(s) 1788, 2085
Alw26I GTCTC 1 cut(s) 1566
Alw44I GTGCAC 1 cut(s) 2081
AlwI GGATC 5 cut(s) 12, 331, 469, 877, 1884
Ama87I CYCGRG 2 cut(s) 957, 1682
AoxI GGCC 8 cut(s) 35, 39, 53, 65, 357, 822, 1243, 1692
ApaLI GTGCAC 1 cut(s) 2081
ApeKI GCWGC 7 cut(s) 100, 254, 1172, 1218, 1221, 1507, 1709
ApoI RAATTY 3 cut(s) 605, 622, 1199
ArsI GACNNNNNNTTYG 2 cut(s) 169, 201
AseI ATTAAT 1 cut(s) 731
Asp700I GAANNNNTTC 2 cut(s) 609, 1649
AspLEI GCGC 1 cut(s) 1177
AspS9I GGNCC 5 cut(s) 65, 215, 823, 1351, 1933
AsuHPI GGTGA 8 cut(s) 28, 120, 1204, 1502, 1580, 2005, 2044, 2117
AvaI CYCGRG 2 cut(s) 957, 1682
AvaII GGWCC 3 cut(s) 215, 1351, 1933
BaeGI GKGCMC 1 cut(s) 2085
BanI GGYRCC 1 cut(s) 1093
BanII GRGCYC 1 cut(s) 1788
BarI GAAGNNNNNNTAC 2 cut(s) 2041, 2073
BbrPI CACGTG 1 cut(s) 1391
BbsI GAAGAC 1 cut(s) 1028
Bbv12I GWGCWC 2 cut(s) 1788, 2085
BbvCI CCTCAGC 1 cut(s) 1016
BbvI GCAGC 7 cut(s) 87, 266, 1159, 1205, 1233, 1519, 1721
BccI CCATC 4 cut(s) 41, 89, 284, 1466
BceAI ACGGC 3 cut(s) 40, 270, 1355
BciT130I CCWGG 2 cut(s) 300, 1186
BcoDI GTCTC 1 cut(s) 1566
BfaI CTAG 3 cut(s) 549, 990, 1380
BfmI CTRYAG 1 cut(s) 1219
BglII AGATCT 1 cut(s) 1447
BlpI GCTNAGC 1 cut(s) 1713
Bme1390I CCNGG 2 cut(s) 300, 1186
Bme18I GGWCC 3 cut(s) 215, 1351, 1933
BmeT110I CYCGRG 2 cut(s) 957, 1682
BmgT120I GGNCC 5 cut(s) 65, 215, 823, 1351, 1933
BmiI GGNNCC 8 cut(s) 66, 164, 216, 954, 1095, 1353, 1481, 1851
BmrFI CCNGG 2 cut(s) 300, 1186
BmrI ACTGGG 3 cut(s) 587, 1370, 1714
BmsI GCATC 4 cut(s) 241, 867, 1360, 1726
BmuI ACTGGG 3 cut(s) 587, 1370, 1714
BpiI GAAGAC 1 cut(s) 1028
BpmI CTGGAG 4 cut(s) 125, 321, 714, 1085
Bpu10I CCTNAGC 1 cut(s) 1016
Bpu1102I GCTNAGC 1 cut(s) 1713
BpuEI CTTGAG 2 cut(s) 1364, 1548
BsaAI YACGTR 2 cut(s) 1391, 2048
BsaJI CCNNGG 5 cut(s) 131, 286, 403, 1184, 1695
BsaXI ACNNNNNCTCC 4 cut(s) 116, 146, 1134, 1164
Bsc4I CCNNNNNNNGG 6 cut(s) 48, 62, 1301, 1360, 1361, 2222
Bse118I RCCGGY 2 cut(s) 37, 67
Bse1I ACTGG 9 cut(s) 582, 697, 915, 985, 1033, 1365, 1709, 2041, 2046
Bse3DI GCAATG 4 cut(s) 357, 1291, 1527, 1616
BseBI CCWGG 2 cut(s) 300, 1186
BseDI CCNNGG 5 cut(s) 131, 286, 403, 1184, 1695
BseGI GGATG 1 cut(s) 1786
BseLI CCNNNNNNNGG 6 cut(s) 48, 62, 1301, 1360, 1361, 2222
BseMI GCAATG 4 cut(s) 357, 1291, 1527, 1616
BseMII CTCAG 4 cut(s) 157, 1007, 1704, 2081
BseNI ACTGG 9 cut(s) 582, 697, 915, 985, 1033, 1365, 1709, 2041, 2046
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 2085
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 7 cut(s) 87, 266, 1159, 1205, 1233, 1519, 1721
Bsh1285I CGRYCG 2 cut(s) 42, 175
BshFI GGCC 8 cut(s) 37, 41, 55, 67, 359, 824, 1245, 1694
BshNI GGYRCC 1 cut(s) 1093
BsiEI CGRYCG 2 cut(s) 42, 175
BsiHKAI GWGCWC 2 cut(s) 1788, 2085
BsiHKCI CYCGRG 2 cut(s) 957, 1682
BsiSI CCGG 3 cut(s) 38, 68, 113
BslFI GGGAC 3 cut(s) 1301, 1318, 1337
BslI CCNNNNNNNGG 6 cut(s) 48, 62, 1301, 1360, 1361, 2222
BsmAI GTCTC 1 cut(s) 1566
BsmFI GGGAC 3 cut(s) 1301, 1318, 1337
BsmI GAATGC 1 cut(s) 183
BsnI GGCC 8 cut(s) 37, 41, 55, 67, 359, 824, 1245, 1694
BsoBI CYCGRG 2 cut(s) 957, 1682
Bsp1286I GDGCHC 2 cut(s) 1788, 2085
Bsp143I GATC 8 cut(s) 4, 304, 323, 474, 869, 967, 1447, 1876
Bsp1720I GCTNAGC 1 cut(s) 1713
BspACI CCGC 7 cut(s) 14, 42, 62, 171, 212, 725, 1091
BspANI GGCC 8 cut(s) 37, 41, 55, 67, 359, 824, 1245, 1694
BspCNI CTCAG 4 cut(s) 156, 1008, 1705, 2082
BspHI TCATGA 1 cut(s) 1881
BspLI GGNNCC 8 cut(s) 66, 164, 216, 954, 1095, 1353, 1481, 1851
BspMAI CTGCAG 1 cut(s) 1223
BspPI GGATC 5 cut(s) 12, 331, 469, 877, 1884
BspT107I GGYRCC 1 cut(s) 1093
BsrDI GCAATG 4 cut(s) 357, 1291, 1527, 1616
BsrFI RCCGGY 2 cut(s) 37, 67
BsrI ACTGG 9 cut(s) 582, 697, 915, 985, 1033, 1365, 1709, 2041, 2046
BssAI RCCGGY 2 cut(s) 37, 67
BssECI CCNNGG 5 cut(s) 131, 286, 403, 1184, 1695
BssMI GATC 8 cut(s) 4, 304, 323, 474, 869, 967, 1447, 1876
BssNAI GTATAC 1 cut(s) 678
BssT1I CCWWGG 1 cut(s) 1695
Bst1107I GTATAC 1 cut(s) 678
Bst2UI CCWGG 2 cut(s) 300, 1186
Bst4CI ACNGT 4 cut(s) 132, 506, 1309, 1560
Bst6I CTCTTC 1 cut(s) 2110
BstBAI YACGTR 2 cut(s) 1391, 2048
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 6 cut(s) 143, 156, 1016, 1406, 1713, 2090
BstDSI CCRYGG 2 cut(s) 131, 286
BstEII GGTNACC 2 cut(s) 1210, 1430
BstF5I GGATG 1 cut(s) 1786
BstHHI GCGC 1 cut(s) 1177
BstKTI GATC 8 cut(s) 7, 307, 326, 477, 872, 970, 1450, 1879
BstMAI GTCTC 1 cut(s) 1566
BstMBI GATC 8 cut(s) 4, 304, 323, 474, 869, 967, 1447, 1876
BstMCI CGRYCG 2 cut(s) 42, 175
BstMWI GCNNNNNNNGC 5 cut(s) 38, 109, 356, 1263, 1596
BstNI CCWGG 2 cut(s) 300, 1186
BstNSI RCATGY 1 cut(s) 1193
BstPI GGTNACC 2 cut(s) 1210, 1430
BstSCI CCNGG 2 cut(s) 298, 1184
BstSFI CTRYAG 1 cut(s) 1219
BstSLI GKGCMC 1 cut(s) 2085
BstV1I GCAGC 7 cut(s) 87, 266, 1159, 1205, 1233, 1519, 1721
BstV2I GAAGAC 1 cut(s) 1028
BstX2I RGATCY 4 cut(s) 474, 869, 1447, 1876
BstXI CCANNNNNNTGG 3 cut(s) 225, 265, 1192
BstYI RGATCY 4 cut(s) 474, 869, 1447, 1876
BstZ17I GTATAC 1 cut(s) 678
BstZI CGGCCG 1 cut(s) 39
BsuRI GGCC 8 cut(s) 37, 41, 55, 67, 359, 824, 1245, 1694
BtgI CCRYGG 2 cut(s) 131, 286
BtgZI GCGATG 1 cut(s) 909
BtsCI GGATG 1 cut(s) 1786
BtsIMutI CAGTG 3 cut(s) 151, 978, 1452
Cac8I GCNNGC 1 cut(s) 39
CciI TCATGA 1 cut(s) 1881
CfoI GCGC 1 cut(s) 1177
Cfr10I RCCGGY 2 cut(s) 37, 67
Cfr13I GGNCC 5 cut(s) 65, 215, 823, 1351, 1933
Csp6I GTAC 2 cut(s) 231, 786
CviAII CATG 5 cut(s) 371, 437, 492, 1190, 1882
CviQI GTAC 2 cut(s) 231, 786
DdeI CTNAG 6 cut(s) 143, 156, 1016, 1406, 1713, 2090
DpnI GATC 8 cut(s) 6, 306, 325, 476, 871, 969, 1449, 1878
DpnII GATC 8 cut(s) 4, 304, 323, 474, 869, 967, 1447, 1876
DraI TTTAAA 2 cut(s) 519, 1555
EaeI YGGCCR 1 cut(s) 39
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 2110
EarI CTCTTC 1 cut(s) 2110
Ecl136II GAGCTC 1 cut(s) 1786
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 1695
Eco147I AGGCCT 2 cut(s) 359, 1694
Eco24I GRGCYC 1 cut(s) 1788
Eco47I GGWCC 3 cut(s) 215, 1351, 1933
Eco52I CGGCCG 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 1786
Eco57I CTGAAG 3 cut(s) 462, 905, 1476
Eco72I CACGTG 1 cut(s) 1391
Eco88I CYCGRG 2 cut(s) 957, 1682
Eco91I GGTNACC 2 cut(s) 1210, 1430
EcoICRI GAGCTC 1 cut(s) 1786
EcoO65I GGTNACC 2 cut(s) 1210, 1430
EcoRI GAATTC 1 cut(s) 605
EcoRII CCWGG 2 cut(s) 298, 1184
EcoT14I CCWWGG 1 cut(s) 1695
EcoT22I ATGCAT 1 cut(s) 1042
EcoT38I GRGCYC 1 cut(s) 1788
ErhI CCWWGG 1 cut(s) 1695
FaeI CATG 5 cut(s) 374, 440, 495, 1193, 1885
FalI AAGNNNNNCTT 4 cut(s) 1326, 1358, 1449, 1481
FaqI GGGAC 3 cut(s) 1301, 1318, 1337
FatI CATG 5 cut(s) 370, 436, 491, 1189, 1881
FauI CCCGC 2 cut(s) 55, 205
FauNDI CATATG 1 cut(s) 220
FblI GTMKAC 1 cut(s) 677
FokI GGATG 1 cut(s) 1793
FriOI GRGCYC 1 cut(s) 1788
FseI GGCCGGCC 1 cut(s) 41
FspBI CTAG 3 cut(s) 549, 990, 1380
GlaI GCGC 1 cut(s) 1176
GsuI CTGGAG 4 cut(s) 125, 321, 714, 1085
HaeIII GGCC 8 cut(s) 37, 41, 55, 67, 359, 824, 1245, 1694
HapII CCGG 3 cut(s) 38, 68, 113
HhaI GCGC 1 cut(s) 1177
Hin1II CATG 5 cut(s) 374, 440, 495, 1193, 1885
Hin6I GCGC 1 cut(s) 1175
HinP1I GCGC 1 cut(s) 1175
HincII GTYRAC 2 cut(s) 188, 199
HindII GTYRAC 2 cut(s) 188, 199
HindIII AAGCTT 1 cut(s) 1109
HinfI GANTC 6 cut(s) 125, 149, 797, 1346, 1655, 1885
HpaII CCGG 3 cut(s) 38, 68, 113
HphI GGTGA 8 cut(s) 28, 120, 1204, 1502, 1580, 2005, 2044, 2117
Hpy166II GTNNAC 6 cut(s) 188, 199, 678, 786, 1076, 2083
Hpy188I TCNGA 5 cut(s) 78, 281, 628, 739, 1803
Hpy188III TCNNGA 8 cut(s) 239, 464, 538, 847, 923, 1064, 1682, 1882
Hpy8I GTNNAC 6 cut(s) 188, 199, 678, 786, 1076, 2083
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 8 cut(s) 13, 202, 506, 556, 929, 1063, 1753, 2124
HpyCH4III ACNGT 4 cut(s) 132, 506, 1309, 1560
HpyCH4IV ACGT 4 cut(s) 384, 1274, 1390, 2047
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 109, 356, 1263, 1596
HpyF3I CTNAG 6 cut(s) 143, 156, 1016, 1406, 1713, 2090
HpySE526I ACGT 4 cut(s) 384, 1274, 1390, 2047
Hsp92II CATG 5 cut(s) 374, 440, 495, 1193, 1885
HspAI GCGC 1 cut(s) 1175
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Kzo9I GATC 8 cut(s) 4, 304, 323, 474, 869, 967, 1447, 1876
LmnI GCTCC 3 cut(s) 78, 338, 1517
Lsp1109I GCAGC 7 cut(s) 87, 266, 1159, 1205, 1233, 1519, 1721
LweI GCATC 4 cut(s) 241, 867, 1360, 1726
MaeI CTAG 3 cut(s) 549, 990, 1380
MaeII ACGT 4 cut(s) 384, 1274, 1390, 2047
MaeIII GTNAC 6 cut(s) 126, 146, 362, 1210, 1430, 2032
MalI GATC 8 cut(s) 6, 306, 325, 476, 871, 969, 1449, 1878
MboI GATC 8 cut(s) 4, 304, 323, 474, 869, 967, 1447, 1876
MfeI CAATTG 2 cut(s) 525, 1998
MflI RGATCY 4 cut(s) 474, 869, 1447, 1876
MhlI GDGCHC 2 cut(s) 1788, 2085
MluCI AATT 9 cut(s) 328, 525, 605, 622, 1052, 1199, 1629, 1913, 1998
MlyI GAGTC 5 cut(s) 134, 143, 1355, 1664, 1879
MmeI TCCRAC 2 cut(s) 102, 1913
Mph1103I ATGCAT 1 cut(s) 1042
MroNI GCCGGC 1 cut(s) 37
MroXI GAANNNNTTC 2 cut(s) 609, 1649
MseI TTAA 4 cut(s) 518, 731, 1554, 1832
MslI CAYNNNNRTG 6 cut(s) 223, 263, 671, 831, 1488, 2176
MspA1I CMGCKG 3 cut(s) 44, 1218, 1712
MspI CCGG 3 cut(s) 38, 68, 113
MspR9I CCNGG 2 cut(s) 300, 1186
MunI CAATTG 2 cut(s) 525, 1998
Mva1269I GAATGC 1 cut(s) 183
MvaI CCWGG 2 cut(s) 300, 1186
MwoI GCNNNNNNNGC 5 cut(s) 38, 109, 356, 1263, 1596
NaeI GCCGGC 1 cut(s) 39
NdeI CATATG 1 cut(s) 220
NdeII GATC 8 cut(s) 4, 304, 323, 474, 869, 967, 1447, 1876
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 5 cut(s) 374, 440, 495, 1193, 1885
NlaIV GGNNCC 8 cut(s) 66, 164, 216, 954, 1095, 1353, 1481, 1851
NmuCI GTSAC 4 cut(s) 126, 146, 1210, 2032
NsiI ATGCAT 1 cut(s) 1042
NspI RCATGY 1 cut(s) 1193
PaeR7I CTCGAG 1 cut(s) 957
PagI TCATGA 1 cut(s) 1881
PceI AGGCCT 2 cut(s) 359, 1694
PcsI WCGNNNNNNNCGW 1 cut(s) 815
PctI GAATGC 1 cut(s) 183
PdiI GCCGGC 1 cut(s) 39
PdmI GAANNNNTTC 2 cut(s) 609, 1649
PfeI GAWTC 1 cut(s) 797
PflMI CCANNNNNTGG 1 cut(s) 2222
PfoI TCCNGGA 1 cut(s) 298
PleI GAGTC 5 cut(s) 133, 143, 1354, 1663, 1879
PmaCI CACGTG 1 cut(s) 1391
PmlI CACGTG 1 cut(s) 1391
PpsI GAGTC 5 cut(s) 133, 143, 1354, 1663, 1879
Ppu21I YACGTR 2 cut(s) 1391, 2048
PshBI ATTAAT 1 cut(s) 731
Psp124BI GAGCTC 1 cut(s) 1788
Psp6I CCWGG 2 cut(s) 298, 1184
PspCI CACGTG 1 cut(s) 1391
PspEI GGTNACC 2 cut(s) 1210, 1430
PspGI CCWGG 2 cut(s) 298, 1184
PspN4I GGNNCC 8 cut(s) 66, 164, 216, 954, 1095, 1353, 1481, 1851
PspPI GGNCC 5 cut(s) 65, 215, 823, 1351, 1933
PspXI VCTCGAGB 1 cut(s) 957
PstI CTGCAG 1 cut(s) 1223
PsuI RGATCY 4 cut(s) 474, 869, 1447, 1876
PvuII CAGCTG 2 cut(s) 1218, 1712
RigI GGCCGGCC 1 cut(s) 41
RsaI GTAC 2 cut(s) 232, 787
RsaNI GTAC 2 cut(s) 231, 786
RseI CAYNNNNRTG 6 cut(s) 223, 263, 671, 831, 1488, 2176
SacI GAGCTC 1 cut(s) 1788
SaqAI TTAA 4 cut(s) 518, 731, 1554, 1832
Sau3AI GATC 8 cut(s) 4, 304, 323, 474, 869, 967, 1447, 1876
Sau96I GGNCC 5 cut(s) 65, 215, 823, 1351, 1933
SchI GAGTC 5 cut(s) 134, 143, 1355, 1664, 1879
ScrFI CCNGG 2 cut(s) 300, 1186
SduI GDGCHC 2 cut(s) 1788, 2085
SfaNI GCATC 4 cut(s) 241, 867, 1360, 1726
SfcI CTRYAG 1 cut(s) 1219
Sfr274I CTCGAG 1 cut(s) 957
SinI GGWCC 3 cut(s) 215, 1351, 1933
SlaI CTCGAG 1 cut(s) 957
SmiMI CAYNNNNRTG 6 cut(s) 223, 263, 671, 831, 1488, 2176
SmlI CTYRAG 3 cut(s) 957, 1343, 1563
SmoI CTYRAG 3 cut(s) 957, 1343, 1563
Sse9I AATT 9 cut(s) 328, 525, 605, 622, 1052, 1199, 1629, 1913, 1998
SseBI AGGCCT 2 cut(s) 359, 1694
SsiI CCGC 7 cut(s) 14, 42, 62, 171, 212, 725, 1091
SspI AATATT 1 cut(s) 1925
SspMI CTAG 3 cut(s) 549, 990, 1380
SstI GAGCTC 1 cut(s) 1788
StuI AGGCCT 2 cut(s) 359, 1694
StyD4I CCNGG 2 cut(s) 298, 1184
StyI CCWWGG 1 cut(s) 1695
TaaI ACNGT 4 cut(s) 132, 506, 1309, 1560
TaiI ACGT 4 cut(s) 387, 1277, 1393, 2050
TaqI TCGA 5 cut(s) 175, 846, 958, 1653, 1816
TaqII GACCGA 2 cut(s) 1339, 1950
TasI AATT 9 cut(s) 328, 525, 605, 622, 1052, 1199, 1629, 1913, 1998
TatI WGTACW 1 cut(s) 230
TauI GCSGC 3 cut(s) 44, 728, 1094
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 4 cut(s) 518, 731, 1554, 1832
Tru9I TTAA 4 cut(s) 518, 731, 1554, 1832
TscAI CASTG 3 cut(s) 151, 985, 1459
TseFI GTSAC 4 cut(s) 126, 146, 1210, 2032
TseI GCWGC 7 cut(s) 100, 254, 1172, 1218, 1221, 1507, 1709
Tsp45I GTSAC 4 cut(s) 126, 146, 1210, 2032
TspGWI ACGGA 1 cut(s) 803
TspRI CASTG 3 cut(s) 151, 985, 1459
Van91I CCANNNNNTGG 1 cut(s) 2222
VneI GTGCAC 1 cut(s) 2081
VpaK11BI GGWCC 3 cut(s) 215, 1351, 1933
VspI ATTAAT 1 cut(s) 731
XapI RAATTY 3 cut(s) 605, 622, 1199
XceI RCATGY 1 cut(s) 1193
XhoI CTCGAG 1 cut(s) 957
XmiI GTMKAC 1 cut(s) 677
XmnI GAANNNNTTC 2 cut(s) 609, 1649
XspI CTAG 3 cut(s) 549, 990, 1380
Zsp2I ATGCAT 1 cut(s) 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.