Rh6DG342900

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002048
Physical Location & Seq
Forward (+)
54573374 .. 54573733
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG342900.1

Sequence Viewer

Length: 360 bp
ATGCCCTTAACTAAAGAAAATAATTTAGTCGCTTCAGGAGAAGAAAGCTGTCAAGGAAGAGCATTACAGATCTCTCTCTCCCCCTCTGATCGATTCTTAGGTAGCAGAGAGCACAAAACTATGGAGAATATGATGAACAAGCTCCAGAATTTGGTCGCGTACCCTAAAATCAACGAAGATTTCTACAGCCGTACCCTCTCCGGCGGCGTCATCACTCTCGCCTCCTCCATCGTTATGCTCCTGCTCTTCTCCGAGGTCGTACGCTTTGCTTTTGCTATTTCTCTTTGTTATTTGATTGGAATTTGTGTTTTCATTGAAGATCTGTCAGATTCTAGGGTTTGGAATTATGAAGTAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

119

Amino Acids

13.41

Weight (kDa)

5.07

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERGIC_N PF13850 49 - 88 3.7e-07 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 151
AccII CGCG 1 cut(s) 158
AciI CCGC 1 cut(s) 204
AcsI RAATTY 2 cut(s) 148, 300
AcuI CTGAAG 1 cut(s) 18
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 3 cut(s) 161, 193, 261
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 1 cut(s) 317
AluBI AGCT 2 cut(s) 48, 142
AluI AGCT 2 cut(s) 48, 142
Alw21I GWGCWC 1 cut(s) 114
ApoI RAATTY 2 cut(s) 148, 300
BaeI ACNNNNGTAYC 2 cut(s) 175, 208
Bbv12I GWGCWC 1 cut(s) 114
BccI CCATC 1 cut(s) 236
BceAI ACGGC 1 cut(s) 174
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 184
BglII AGATCT 2 cut(s) 69, 319
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 151
BseCI ATCGAT 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 214
Bsh1236I CGCG 1 cut(s) 158
BshVI ATCGAT 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 114
BsiSI CCGG 1 cut(s) 201
BsiWI CGTACG 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 3 cut(s) 69, 88, 319
BspACI CCGC 1 cut(s) 204
BspDI ATCGAT 1 cut(s) 91
BspFNI CGCG 1 cut(s) 158
BspQI GCTCTTC 2 cut(s) 52, 251
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 3 cut(s) 69, 88, 319
BssNI GRCGYC 1 cut(s) 207
Bst6I CTCTTC 2 cut(s) 52, 251
BstACI GRCGYC 1 cut(s) 207
BstDEI CTNAG 1 cut(s) 97
BstFNI CGCG 1 cut(s) 158
BstKTI GATC 3 cut(s) 72, 91, 322
BstMBI GATC 3 cut(s) 69, 88, 319
BstSFI CTRYAG 1 cut(s) 184
BstUI CGCG 1 cut(s) 158
BstX2I RGATCY 2 cut(s) 69, 319
BstYI RGATCY 2 cut(s) 69, 319
Bsu15I ATCGAT 1 cut(s) 91
BsuTUI ATCGAT 1 cut(s) 91
ClaI ATCGAT 1 cut(s) 91
CseI GACGC 1 cut(s) 196
Csp6I GTAC 3 cut(s) 160, 192, 260
CviJI RGCY 3 cut(s) 48, 142, 189
CviKI_1 RGCY 3 cut(s) 48, 142, 189
CviQI GTAC 3 cut(s) 160, 192, 260
DdeI CTNAG 1 cut(s) 97
DpnI GATC 3 cut(s) 71, 90, 321
DpnII GATC 3 cut(s) 69, 88, 319
Eam1104I CTCTTC 2 cut(s) 52, 251
EarI CTCTTC 2 cut(s) 52, 251
Eco57I CTGAAG 1 cut(s) 18
FaiI YATR 4 cut(s) 122, 131, 236, 348
Fnu4HI GCNGC 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 1 cut(s) 333
GluI GCNGC 1 cut(s) 205
GsuI CTGGAG 1 cut(s) 128
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 196
Hin1I GRCGYC 1 cut(s) 207
HinfI GANTC 2 cut(s) 93, 329
HpaII CCGG 1 cut(s) 201
Hpy188I TCNGA 3 cut(s) 88, 253, 328
Hpy188III TCNNGA 2 cut(s) 36, 145
HpyF3I CTNAG 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 207
Kzo9I GATC 3 cut(s) 69, 88, 319
LguI GCTCTTC 2 cut(s) 52, 251
LmnI GCTCC 2 cut(s) 147, 243
LpnPI CCDG 4 cut(s) 21, 158, 214, 254
MaeI CTAG 1 cut(s) 333
MalI GATC 3 cut(s) 71, 90, 321
MboI GATC 3 cut(s) 69, 88, 319
MboII GAAGA 5 cut(s) 53, 69, 188, 238, 329
MflI RGATCY 2 cut(s) 69, 319
MhlI GDGCHC 1 cut(s) 114
MluCI AATT 4 cut(s) 22, 148, 300, 343
MnlI CCTC 5 cut(s) 94, 206, 232, 235, 247
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 1 cut(s) 201
MvnI CGCG 1 cut(s) 158
NdeII GATC 3 cut(s) 69, 88, 319
PciSI GCTCTTC 2 cut(s) 52, 251
PfeI GAWTC 2 cut(s) 93, 329
Pfl23II CGTACG 1 cut(s) 259
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 1 cut(s) 206
PspLI CGTACG 1 cut(s) 259
PsuI RGATCY 2 cut(s) 69, 319
RsaI GTAC 3 cut(s) 161, 193, 261
RsaNI GTAC 3 cut(s) 160, 192, 260
RseI CAYNNNNRTG 1 cut(s) 233
SapI GCTCTTC 2 cut(s) 52, 251
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 3 cut(s) 69, 88, 319
SduI GDGCHC 1 cut(s) 114
SetI ASST 4 cut(s) 50, 103, 144, 258
SfcI CTRYAG 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 4 cut(s) 22, 148, 300, 343
SsiI CCGC 1 cut(s) 204
SspMI CTAG 1 cut(s) 333
TaqI TCGA 1 cut(s) 91
TasI AATT 4 cut(s) 22, 148, 300, 343
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 2 cut(s) 93, 329
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TspDTI ATGAA 2 cut(s) 149, 301
Van91I CCANNNNNTGG 1 cut(s) 151
XapI RAATTY 2 cut(s) 148, 300
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.