RchiOBHm_Chr7g0225831

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002048
Physical Location & Seq
Reverse (-)
48790015 .. 48793542
3528 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20228

Sequence Viewer

Length: 183 bp
ATGTATGCCAAAATTTTGGTTGCCATATGCAGTGCTGAATCAATATCACAAAGGATCGGAAAACTGAGAGATGAAGAGCTGCAGCCACAACTTATCGAGCTGCTAAAGGGCTTCATGAGAAATTGGTGGATAATCACCTGTTGGAATTGCATGAAACTCAAAACAAAATCATGTCTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

60

Amino Acids

7.07

Weight (kDa)

9.1

Isoelectric Point (pI)

69.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 2 - 44 6.8e-14 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 175
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 12
AluBI AGCT 2 cut(s) 79, 100
AluI AGCT 2 cut(s) 79, 100
AlwI GGATC 1 cut(s) 62
ApeKI GCWGC 3 cut(s) 79, 82, 100
ApoI RAATTY 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 127
BbvI GCAGC 3 cut(s) 66, 87, 94
BfmI CTRYAG 2 cut(s) 80, 176
BisI GCNGC 3 cut(s) 80, 83, 101
BlsI GCNGC 3 cut(s) 81, 84, 102
BseMII CTCAG 1 cut(s) 56
BseXI GCAGC 3 cut(s) 66, 87, 94
Bsp143I GATC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 57
BspHI TCATGA 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 84
BspPI GGATC 1 cut(s) 62
BspQI GCTCTTC 1 cut(s) 69
BssMI GATC 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 65
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstSFI CTRYAG 2 cut(s) 80, 176
BstV1I GCAGC 3 cut(s) 66, 87, 94
BstXI CCANNNNNNTGG 1 cut(s) 16
BtsI GCAGTG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 37
CciI TCATGA 1 cut(s) 114
CviAII CATG 3 cut(s) 115, 151, 171
CviJI RGCY 4 cut(s) 79, 85, 100, 111
CviKI_1 RGCY 4 cut(s) 79, 85, 100, 111
DdeI CTNAG 1 cut(s) 65
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
FaeI CATG 3 cut(s) 118, 154, 174
FaiI YATR 6 cut(s) 6, 26, 28, 116, 152, 172
FatI CATG 3 cut(s) 114, 150, 170
FauNDI CATATG 1 cut(s) 26
FblI GTMKAC 1 cut(s) 175
Fnu4HI GCNGC 3 cut(s) 80, 83, 101
Fsp4HI GCNGC 3 cut(s) 80, 83, 101
GluI GCNGC 3 cut(s) 80, 83, 101
Hin1II CATG 3 cut(s) 118, 154, 174
HinfI GANTC 1 cut(s) 38
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 180
HpyCH4V TGCA 3 cut(s) 30, 82, 150
HpyF3I CTNAG 1 cut(s) 65
Hsp92II CATG 3 cut(s) 118, 154, 174
Kzo9I GATC 1 cut(s) 54
LguI GCTCTTC 1 cut(s) 69
LpnPI CCDG 1 cut(s) 151
Lsp1109I GCAGC 3 cut(s) 66, 87, 94
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 1 cut(s) 86
MluCI AATT 3 cut(s) 12, 121, 145
MmeI TCCRAC 1 cut(s) 122
NdeI CATATG 1 cut(s) 26
NdeII GATC 1 cut(s) 54
NlaIII CATG 3 cut(s) 118, 154, 174
PagI TCATGA 1 cut(s) 114
PciSI GCTCTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 3 cut(s) 81, 84, 102
PstI CTGCAG 1 cut(s) 84
SapI GCTCTTC 1 cut(s) 69
SatI GCNGC 3 cut(s) 80, 83, 101
Sau3AI GATC 1 cut(s) 54
SetI ASST 3 cut(s) 81, 102, 140
SfcI CTRYAG 2 cut(s) 80, 176
SgeI CNNG 4 cut(s) 109, 127, 150, 163
Sse9I AATT 3 cut(s) 12, 121, 145
TaaI ACNGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 96
TasI AATT 3 cut(s) 12, 121, 145
TfiI GAWTC 1 cut(s) 38
TscAI CASTG 1 cut(s) 37
TseI GCWGC 3 cut(s) 79, 82, 100
TspDTI ATGAA 3 cut(s) 87, 103, 167
TspRI CASTG 1 cut(s) 37
XapI RAATTY 1 cut(s) 12
XmiI GTMKAC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.