Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002048

Physical Location & Seq

Genomic Coordinates Forward (+)

2253314 .. 2282208

Gene Structure 28895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG015000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAGCTTGGCGTTGATCTCCTGCGAGGTCAAATTGGAGATGGATTTGAAGACACAATCTGACTTGAAGGAGTTGAAGTTGGGGGTTGGAATAGAACCCGTGTGGAAGACGAGATCGTGGCCGGCTTCACAGGAGCAGAAATTCCAACGCCCTGCTGCAATTGGCTTCTTGGAGAATCTCGTAGATGCTTATGCTCTTGAAACTGCTGTTTTGTCAGTATATGAAAAAGTTCGACACTTGGATACTCATATTGGTCAACCTCAGTTTAGTACTCCTACGTTTCTATCTATTCCTGTGCTGCATGAAGTGACTCCAGGTGGAGACGAGAACAACAACTATAGTGCGGCCAAGTATCGGAACTCCAGGATTCAAACTCAAGGTGAGGCTGAAAGAGATGAGTTCAACTCTGTTTCGACACTCCTTGCAGATTTGTTGCAGGTCTCGGTCAAGGTGAACACCTTGAGTCTGCTTCTTCTTGTGAAATTTGGAAGATTTTGCTTGATTCTTCGTTTGTCTCACTTCTTAGCACAAGGGCCAACTCGGGTTAAAGATCTTGAATGGGTTCCTGTAGCTTTCTCTGTCAATGTCTTTGCAGCTTCTTTAAGCATCATGGATCTCTGCAGCTATGAAGGAGTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008515 GO:0008643 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010431 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0021700 GO:0022414 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061458 GO:0065003 GO:0071695 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

213

Amino Acids

23.79

Weight (kDa)

5.84

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002048)

Species	Orthologous Gene IDs
malus_domestica	MD07G1221000.v1.1
prunus_persica	Prupe.1G119300_v2.0.a1 Prupe.1G119300_v2.0.a1
pyrus_communis	pycom06g16260
rosa_chinensis	RchiOBHm_Chr2g0109271 RchiOBHm_Chr3g0449971 RchiOBHm_Chr5g0055151 RchiOBHm_Chr7g0225831
rosa_laevigata	RLG00000013375 RLG00000014560 RLG00000019363 RLG00000034972 RLG00000036177
rosa_multiflora	Rmu_sc0000820.1_g000009 Rmu_sc0010632.1_g000015 Rmu_sc0021708.1_g000002
rosa_roxburghii	Rroxscaffold_4G00326060
rosa_rugosa	Rorug04G0011200 Rorug05G0291600 Rorug06G0106800 Rorug06G0229800
rosa_samantha	Rh1AG168800 Rh1BG015000 Rh1CG156200 Rh2BG108000 Rh2BG192200 Rh2CG109800 Rh2DG571800 Rh3AG023500 Rh3CG317800 Rh3DG024000 Rh4AG069700 Rh4AG336500 Rh4CG032300 Rh4DG120200 Rh4DG339000 Rh5CG394600 Rh5DG417000 Rh5DG465600 Rh6BG052200 Rh6CG121900 Rh6DG342900 Rh6DG343000 Rh7AG365200 Rh7CG384100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	427
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	2 cut(s)	119, 345
AcsI	RAATTY	2 cut(s)	140, 482
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	7 cut(s)	49, 67, 76, 200, 371, 403, 557
AjnI	CCWGG	2 cut(s)	313, 362
AluBI	AGCT	4 cut(s)	6, 572, 596, 624
AluI	AGCT	4 cut(s)	6, 572, 596, 624
Alw26I	GTCTC	3 cut(s)	315, 445, 519
AlwI	GGATC	1 cut(s)	621
Ama87I	CYCGRG	1 cut(s)	540
AoxI	GGCC	3 cut(s)	119, 345, 533
ApeKI	GCWGC	4 cut(s)	155, 298, 593, 621
ApoI	RAATTY	2 cut(s)	140, 482
Asp700I	GAANNNNTTC	2 cut(s)	228, 561
AspS9I	GGNCC	1 cut(s)	533
AsuHPI	GGTGA	2 cut(s)	392, 463
AvaI	CYCGRG	1 cut(s)	540
BbsI	GAAGAC	2 cut(s)	56, 113
BbvI	GCAGC	4 cut(s)	142, 285, 605, 633
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	315, 364
BciVI	GTATCC	1 cut(s)	235
BcoDI	GTCTC	3 cut(s)	315, 445, 519
BfmI	CTRYAG	3 cut(s)	337, 567, 619
BfuAI	ACCTGC	1 cut(s)	427
BfuI	GTATCC	1 cut(s)	235
BglII	AGATCT	1 cut(s)	550
BisI	GCNGC	5 cut(s)	156, 299, 345, 594, 622
BlsI	GCNGC	5 cut(s)	157, 300, 346, 595, 623
BmcAI	AGTACT	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	315, 364
BmeT110I	CYCGRG	1 cut(s)	540
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	2 cut(s)	315, 364
BmsI	GCATC	2 cut(s)	175, 615
BpiI	GAAGAC	2 cut(s)	56, 113
BplI	GAGNNNNNCTC	2 cut(s)	389, 421
BpmI	CTGGAG	2 cut(s)	297, 346
BpuEI	CTTGAG	2 cut(s)	360, 481
BsaI	GGTCTC	1 cut(s)	445
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse118I	RCCGGY	1 cut(s)	121
BseBI	CCWGG	2 cut(s)	315, 364
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	275
BseXI	GCAGC	4 cut(s)	142, 285, 605, 633
BshFI	GGCC	3 cut(s)	121, 347, 535
BsiHKCI	CYCGRG	1 cut(s)	540
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	3 cut(s)	315, 445, 519
BsmBI	CGTCTC	1 cut(s)	315
BsnI	GGCC	3 cut(s)	121, 347, 535
Bso31I	GGTCTC	1 cut(s)	445
BsoBI	CYCGRG	1 cut(s)	540
Bsp143I	GATC	4 cut(s)	15, 113, 550, 613
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	3 cut(s)	121, 347, 535
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	564
BspMAI	CTGCAG	1 cut(s)	623
BspMI	ACCTGC	1 cut(s)	427
BspPI	GGATC	1 cut(s)	621
BspTNI	GGTCTC	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	121
BssMI	GATC	4 cut(s)	15, 113, 550, 613
Bst2UI	CCWGG	2 cut(s)	315, 364
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	261, 523
BstKTI	GATC	4 cut(s)	18, 116, 553, 616
BstMAI	GTCTC	3 cut(s)	315, 445, 519
BstMBI	GATC	4 cut(s)	15, 113, 550, 613
BstNI	CCWGG	2 cut(s)	315, 364
BstSCI	CCNGG	2 cut(s)	313, 362
BstSFI	CTRYAG	3 cut(s)	337, 567, 619
BstV1I	GCAGC	4 cut(s)	142, 285, 605, 633
BstV2I	GAAGAC	2 cut(s)	56, 113
BstX2I	RGATCY	2 cut(s)	550, 613
BstYI	RGATCY	2 cut(s)	550, 613
BsuI	GTATCC	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	121, 347, 535
BveI	ACCTGC	1 cut(s)	427
Cac8I	GCNNGC	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	2 cut(s)	302, 610
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	2 cut(s)	261, 523
DpnI	GATC	4 cut(s)	17, 115, 552, 615
DpnII	GATC	4 cut(s)	15, 113, 550, 613
EaeI	YGGCCR	2 cut(s)	119, 345
Eco31I	GGTCTC	1 cut(s)	445
Eco88I	CYCGRG	1 cut(s)	540
EcoRII	CCWGG	2 cut(s)	313, 362
Esp3I	CGTCTC	1 cut(s)	315
FaeI	CATG	2 cut(s)	305, 613
FaiI	YATR	8 cut(s)	192, 220, 222, 249, 303, 339, 611, 627
FatI	CATG	2 cut(s)	301, 609
Fnu4HI	GCNGC	5 cut(s)	156, 299, 345, 594, 622
Fsp4HI	GCNGC	5 cut(s)	156, 299, 345, 594, 622
GluI	GCNGC	5 cut(s)	156, 299, 345, 594, 622
GsuI	CTGGAG	2 cut(s)	297, 346
HaeIII	GGCC	3 cut(s)	121, 347, 535
HapII	CCGG	1 cut(s)	122
Hin1II	CATG	2 cut(s)	305, 613
HincII	GTYRAC	1 cut(s)	257
HindII	GTYRAC	1 cut(s)	257
HinfI	GANTC	6 cut(s)	175, 310, 367, 463, 502, 633
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	392, 463
Hpy166II	GTNNAC	2 cut(s)	257, 454
Hpy188I	TCNGA	2 cut(s)	61, 357
Hpy188III	TCNNGA	2 cut(s)	197, 554
Hpy8I	GTNNAC	2 cut(s)	257, 454
HpyAV	CCTTC	2 cut(s)	61, 623
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	6 cut(s)	158, 301, 425, 436, 593, 621
HpyF3I	CTNAG	2 cut(s)	261, 523
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	2 cut(s)	305, 613
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
Kzo9I	GATC	4 cut(s)	15, 113, 550, 613
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	4 cut(s)	142, 285, 605, 633
LweI	GCATC	2 cut(s)	175, 615
MaeII	ACGT	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	4 cut(s)	17, 115, 552, 615
MboI	GATC	4 cut(s)	15, 113, 550, 613
MboII	GAAGA	5 cut(s)	61, 118, 464, 497, 501
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	2 cut(s)	550, 613
MluCI	AATT	4 cut(s)	32, 140, 159, 482
MlyI	GAGTC	3 cut(s)	304, 472, 642
MmeI	TCCRAC	2 cut(s)	67, 169
MnlI	CCTC	3 cut(s)	19, 270, 376
MroNI	GCCGGC	1 cut(s)	121
MroXI	GAANNNNTTC	2 cut(s)	228, 561
MseI	TTAA	2 cut(s)	546, 602
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	315, 364
MunI	CAATTG	1 cut(s)	159
MvaI	CCWGG	2 cut(s)	315, 364
NaeI	GCCGGC	1 cut(s)	123
NdeII	GATC	4 cut(s)	15, 113, 550, 613
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	305, 613
NlaIV	GGNNCC	1 cut(s)	564
NmuCI	GTSAC	1 cut(s)	307
PdiI	GCCGGC	1 cut(s)	123
PdmI	GAANNNNTTC	2 cut(s)	228, 561
PfeI	GAWTC	3 cut(s)	175, 367, 502
PfoI	TCCNGGA	1 cut(s)	362
PkrI	GCNGC	5 cut(s)	157, 300, 346, 595, 623
PleI	GAGTC	3 cut(s)	304, 471, 641
PpsI	GAGTC	3 cut(s)	304, 471, 641
Psp6I	CCWGG	2 cut(s)	313, 362
PspGI	CCWGG	2 cut(s)	313, 362
PspN4I	GGNNCC	1 cut(s)	564
PspPI	GGNCC	1 cut(s)	533
PstI	CTGCAG	1 cut(s)	623
PsuI	RGATCY	2 cut(s)	550, 613
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	546, 602
SatI	GCNGC	5 cut(s)	156, 299, 345, 594, 622
Sau3AI	GATC	4 cut(s)	15, 113, 550, 613
Sau96I	GGNCC	1 cut(s)	533
ScaI	AGTACT	1 cut(s)	271
SchI	GAGTC	3 cut(s)	304, 472, 642
ScrFI	CCNGG	2 cut(s)	315, 364
SfaNI	GCATC	2 cut(s)	175, 615
SfcI	CTRYAG	3 cut(s)	337, 567, 619
SmlI	CTYRAG	2 cut(s)	375, 460
SmoI	CTYRAG	2 cut(s)	375, 460
Sse9I	AATT	4 cut(s)	32, 140, 159, 482
SsiI	CCGC	1 cut(s)	344
StyD4I	CCNGG	2 cut(s)	313, 362
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	2 cut(s)	232, 413
TaqII	GACCGA	1 cut(s)	433
TasI	AATT	4 cut(s)	32, 140, 159, 482
TatI	WGTACW	1 cut(s)	269
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	3 cut(s)	175, 367, 502
Tru1I	TTAA	2 cut(s)	546, 602
Tru9I	TTAA	2 cut(s)	546, 602
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	4 cut(s)	155, 298, 593, 621
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	237, 318, 642
XapI	RAATTY	2 cut(s)	140, 482
XmnI	GAANNNNTTC	2 cut(s)	228, 561
ZrmI	AGTACT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.