Rmu_sc0010632.1_g000015

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010632.1
OG0002048
Physical Location & Seq
Forward (+)
55616 .. 55984
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010632.1_g000015.1.cds

Sequence Viewer

Length: 369 bp
atgatgaacaagatccggaatttggtctcgtacccccaaatcaacaaagatttctacagccgtaccctctccggcggcgtcatcactctcgcctcctccattgttatgcttctgctcttctctgaggtcgtacgctttccttttgctatttctctttgttatttgattggaatttgtgttttcattgaagatgtgtcagattctagggtttggaattatgaagtcaattttgtatttcaagtgggtggtatagtcttatcagatccaaccatattctctaagagccatatctacgagtaccggagaatctcactgtttttttgcttccttcattggtcaattcgaccaggtaatggtttccgttcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

122

Amino Acids

14.11

Weight (kDa)

8.91

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 353
AccIII TCCGGA 1 cut(s) 15
AciI CCGC 1 cut(s) 75
AclWI GGATC 2 cut(s) 7, 257
AcsI RAATTY 2 cut(s) 19, 171
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 4 cut(s) 32, 64, 132, 299
AfiI CCNNNNNNNGG 2 cut(s) 22, 353
AgsI TTSAA 2 cut(s) 188, 239
AjnI CCWGG 1 cut(s) 346
Alw26I GTCTC 1 cut(s) 31
AlwI GGATC 2 cut(s) 7, 257
Aor13HI TCCGGA 1 cut(s) 15
ApoI RAATTY 2 cut(s) 19, 171
BaeI ACNNNNGTAYC 2 cut(s) 46, 79
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 348
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 55
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 31
BsaWI WCCGGW 2 cut(s) 15, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 353
BseAI TCCGGA 1 cut(s) 15
BseBI CCWGG 1 cut(s) 348
BseLI CCNNNNNNNGG 2 cut(s) 22, 353
BseMII CTCAG 1 cut(s) 114
BseRI GAGGAG 1 cut(s) 85
BsiSI CCGG 3 cut(s) 16, 72, 301
BsiWI CGTACG 1 cut(s) 130
BslI CCNNNNNNNGG 2 cut(s) 22, 353
BsmAI GTCTC 1 cut(s) 31
Bso31I GGTCTC 1 cut(s) 31
Bsp13I TCCGGA 1 cut(s) 15
Bsp143I GATC 2 cut(s) 12, 262
BspACI CCGC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 115
BspEI TCCGGA 1 cut(s) 15
BspPI GGATC 2 cut(s) 7, 257
BspQI GCTCTTC 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 31
BssMI GATC 2 cut(s) 12, 262
BssNI GRCGYC 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 315
Bst6I CTCTTC 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 78
BstDEI CTNAG 2 cut(s) 123, 279
BstKTI GATC 2 cut(s) 15, 265
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 2 cut(s) 12, 262
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 1 cut(s) 55
BstX2I RGATCY 2 cut(s) 12, 262
BstYI RGATCY 2 cut(s) 12, 262
BtsIMutI CAGTG 1 cut(s) 311
CseI GACGC 1 cut(s) 67
CsiI ACCWGGT 1 cut(s) 346
Csp6I GTAC 4 cut(s) 31, 63, 131, 298
CviJI RGCY 2 cut(s) 60, 285
CviKI_1 RGCY 2 cut(s) 60, 285
CviQI GTAC 4 cut(s) 31, 63, 131, 298
DdeI CTNAG 2 cut(s) 123, 279
DpnI GATC 2 cut(s) 14, 264
DpnII GATC 2 cut(s) 12, 262
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 346
FaiI YATR 5 cut(s) 107, 219, 251, 272, 288
Fnu4HI GCNGC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 1 cut(s) 204
GluI GCNGC 1 cut(s) 76
HapII CCGG 3 cut(s) 16, 72, 301
HgaI GACGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 78
HinfI GANTC 2 cut(s) 200, 306
HpaII CCGG 3 cut(s) 16, 72, 301
Hpy188I TCNGA 3 cut(s) 124, 199, 262
Hpy188III TCNNGA 2 cut(s) 16, 366
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 315
HpyF3I CTNAG 2 cut(s) 123, 279
Hsp92I GRCGYC 1 cut(s) 78
Kpn2I TCCGGA 1 cut(s) 15
Kzo9I GATC 2 cut(s) 12, 262
LguI GCTCTTC 1 cut(s) 122
LpnPI CCDG 5 cut(s) 29, 85, 314, 333, 360
MabI ACCWGGT 1 cut(s) 346
MaeI CTAG 1 cut(s) 204
MalI GATC 2 cut(s) 14, 264
MboI GATC 2 cut(s) 12, 262
MboII GAAGA 2 cut(s) 109, 200
MflI RGATCY 2 cut(s) 12, 262
MluCI AATT 5 cut(s) 19, 171, 214, 226, 339
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 4 cut(s) 77, 103, 106, 118
MroI TCCGGA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 104
MspI CCGG 3 cut(s) 16, 72, 301
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
NdeII GATC 2 cut(s) 12, 262
PciSI GCTCTTC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 200, 306
Pfl23II CGTACG 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 353
PkrI GCNGC 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspLI CGTACG 1 cut(s) 130
PsuI RGATCY 2 cut(s) 12, 262
RsaI GTAC 4 cut(s) 32, 64, 132, 299
RsaNI GTAC 4 cut(s) 31, 63, 131, 298
RseI CAYNNNNRTG 1 cut(s) 104
SapI GCTCTTC 1 cut(s) 122
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 2 cut(s) 12, 262
ScrFI CCNGG 1 cut(s) 348
SetI ASST 2 cut(s) 129, 352
SexAI ACCWGGT 1 cut(s) 346
SfcI CTRYAG 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 5 cut(s) 19, 171, 214, 226, 339
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 346
TaaI ACNGT 1 cut(s) 315
TaqI TCGA 1 cut(s) 343
TasI AATT 5 cut(s) 19, 171, 214, 226, 339
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 2 cut(s) 200, 306
TscAI CASTG 1 cut(s) 318
TspDTI ATGAA 4 cut(s) 20, 172, 234, 320
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 1 cut(s) 318
Van91I CCANNNNNTGG 1 cut(s) 353
XapI RAATTY 2 cut(s) 19, 171
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.