Rh2DG571800

Protein of unknown function (DUF632)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002048
Physical Location & Seq
Reverse (-)
80190962 .. 80195273
4312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG571800.1

Sequence Viewer

Length: 777 bp
ATGGAGAATATGATGAACAAGCACCAGAATTTGGTCGCGTACCCCAAAATCAACAAAGATTTCTACAGCCATACCCTCTCCGGCGGCGTCATCACTCTCGCCTCCTCCATAGTTATGCTCCTGCTCTTCTCCGAGGTCGTACGCTTTGCTTTTGCTATTTCTCTTTGTTATTTGATTGGAATTTGTGTTTTCATTGAAGATCTGTCAGATTCTAGGGATCTCTCACATCCAAACCCCAATTTCCCGATCGGGTTCAGTTTCTCAGATTACAATTGCTGGAGGAAGCTGCTACGAAGATCGGGAAGAGCTCCTGATGATATATCTAGTGTTGTGCTGGTTGAAAAGGATAGGGACAAAGTTGGAGTTGAAGTAAAGGATTTGTATGCCAGAATTTTGTTTGCCATATGCAGTGGTGAATCAATACCACAAAGGATCGGAAAACTGAGAGATGAAGAGCTGCAGCCACAACTTATCGAGCTGCTAAAGGGCTTCATGAGAAATTGGTGGATAATCACCTGTTGGAACTGCATGAAACTCAAAACAAAATCATGTCTAGAGTGGGATCACTTAACCGCCCCACCATTGGAATGGTCTGCAATGACTCGCACCAGCTTGCTACTTTCAAGCTTGAAGCAGAACTTCAAAATTGGCATGCTTGCTTTGCATCATACTTTTCTTCCCAGAAAAGCGTACAGTGATAGGGCAGTGAACTTGATTGTCAAGGCCACCCCAAGTAATAAACTGCCGAAGTGGCGAACTGGAACTCGGGGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF630 DUF632

Protein Analysis

258

Amino Acids

29.54

Weight (kDa)

9.33

Isoelectric Point (pI)

35.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF632 PF04782 118 - 190 4.5e-13 Protein of unknown function (DUF632)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 31
AccII CGCG 1 cut(s) 38
AciI CCGC 2 cut(s) 84, 573
AclWI GGATC 3 cut(s) 225, 440, 570
AcsI RAATTY 3 cut(s) 28, 180, 390
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 41, 141, 692
AfiI CCNNNNNNNGG 2 cut(s) 31, 583
AgsI TTSAA 6 cut(s) 197, 341, 368, 624, 631, 643
AluBI AGCT 6 cut(s) 286, 308, 457, 478, 612, 627
AluI AGCT 6 cut(s) 286, 308, 457, 478, 612, 627
Alw21I GWGCWC 1 cut(s) 310
AlwI GGATC 3 cut(s) 225, 440, 570
Ama87I CYCGRG 1 cut(s) 765
AoxI GGCC 1 cut(s) 723
ApeKI GCWGC 4 cut(s) 286, 457, 460, 478
ApoI RAATTY 3 cut(s) 28, 180, 390
AsuHPI GGTGA 2 cut(s) 425, 505
AvaI CYCGRG 1 cut(s) 765
BanII GRGCYC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 4 cut(s) 273, 444, 465, 472
BfaI CTAG 3 cut(s) 213, 324, 554
BfmI CTRYAG 2 cut(s) 64, 458
BglI GCCNNNNNGGC 1 cut(s) 751
BglII AGATCT 1 cut(s) 199
BisI GCNGC 5 cut(s) 85, 287, 458, 461, 479
BlsI GCNGC 5 cut(s) 86, 288, 459, 462, 480
BmeT110I CYCGRG 1 cut(s) 765
BmsI GCATC 1 cut(s) 673
BpmI CTGGAG 1 cut(s) 298
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 583
Bse1I ACTGG 1 cut(s) 763
Bse3DI GCAATG 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 31, 583
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 2 cut(s) 276, 434
BseNI ACTGG 1 cut(s) 763
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 4 cut(s) 273, 444, 465, 472
Bsh1236I CGCG 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 249
BshFI GGCC 1 cut(s) 725
BsiEI CGRYCG 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 765
BsiSI CCGG 1 cut(s) 81
BsiWI CGTACG 1 cut(s) 139
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 2 cut(s) 31, 583
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 1 cut(s) 725
BsoBI CYCGRG 1 cut(s) 765
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 6 cut(s) 199, 217, 246, 296, 432, 562
BspACI CCGC 2 cut(s) 84, 573
BspANI GGCC 1 cut(s) 725
BspCNI CTCAG 2 cut(s) 275, 435
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 492
BspMAI CTGCAG 1 cut(s) 462
BspPI GGATC 3 cut(s) 225, 440, 570
BspQI GCTCTTC 3 cut(s) 131, 298, 447
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 1 cut(s) 763
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 6 cut(s) 199, 217, 246, 296, 432, 562
BssNI GRCGYC 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 695
Bst6I CTCTTC 3 cut(s) 131, 298, 447
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 3 cut(s) 614, 653, 657
BstDEI CTNAG 2 cut(s) 262, 443
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 6 cut(s) 202, 220, 249, 299, 435, 565
BstMBI GATC 6 cut(s) 199, 217, 246, 296, 432, 562
BstMCI CGRYCG 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 661, 751
BstNSI RCATGY 1 cut(s) 655
BstSFI CTRYAG 2 cut(s) 64, 458
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 4 cut(s) 273, 444, 465, 472
BstX2I RGATCY 2 cut(s) 199, 217
BstXI CCANNNNNNTGG 1 cut(s) 588
BstYI RGATCY 2 cut(s) 199, 217
BsuRI GGCC 1 cut(s) 725
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 2 cut(s) 415, 711
BtsIMutI CAGTG 3 cut(s) 415, 700, 711
Cac8I GCNNGC 3 cut(s) 614, 653, 657
CciI TCATGA 1 cut(s) 492
CseI GACGC 1 cut(s) 76
Csp6I GTAC 3 cut(s) 40, 140, 691
CviAII CATG 4 cut(s) 493, 529, 549, 652
CviQI GTAC 3 cut(s) 40, 140, 691
DdeI CTNAG 2 cut(s) 262, 443
DpnI GATC 6 cut(s) 201, 219, 248, 298, 434, 564
DpnII GATC 6 cut(s) 199, 217, 246, 296, 432, 562
Eam1104I CTCTTC 3 cut(s) 131, 298, 447
EarI CTCTTC 3 cut(s) 131, 298, 447
Ecl136II GAGCTC 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 310
Eco53kI GAGCTC 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 765
EcoICRI GAGCTC 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 310
FaeI CATG 4 cut(s) 496, 532, 552, 655
FalI AAGNNNNNCTT 2 cut(s) 623, 655
FaqI GGGAC 1 cut(s) 365
FatI CATG 4 cut(s) 492, 528, 548, 651
FauNDI CATATG 1 cut(s) 404
Fnu4HI GCNGC 5 cut(s) 85, 287, 458, 461, 479
FokI GGATG 1 cut(s) 213
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 5 cut(s) 85, 287, 458, 461, 479
FspBI CTAG 3 cut(s) 213, 324, 554
GluI GCNGC 5 cut(s) 85, 287, 458, 461, 479
GsuI CTGGAG 1 cut(s) 298
HaeIII GGCC 1 cut(s) 725
HapII CCGG 1 cut(s) 81
HgaI GACGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 4 cut(s) 496, 532, 552, 655
HindIII AAGCTT 1 cut(s) 625
HinfI GANTC 3 cut(s) 209, 416, 601
HpaII CCGG 1 cut(s) 81
HphI GGTGA 2 cut(s) 425, 505
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 4 cut(s) 133, 208, 265, 437
Hpy188III TCNNGA 5 cut(s) 244, 300, 311, 493, 554
Hpy8I GTNNAC 1 cut(s) 709
HpyCH4III ACNGT 1 cut(s) 695
HpyCH4V TGCA 5 cut(s) 408, 460, 528, 596, 664
HpyF10VI GCNNNNNNNGC 2 cut(s) 661, 751
HpyF3I CTNAG 2 cut(s) 262, 443
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 4 cut(s) 496, 532, 552, 655
Kzo9I GATC 6 cut(s) 199, 217, 246, 296, 432, 562
LguI GCTCTTC 3 cut(s) 131, 298, 447
LmnI GCTCC 2 cut(s) 123, 313
Lsp1109I GCAGC 4 cut(s) 273, 444, 465, 472
LweI GCATC 1 cut(s) 673
MaeI CTAG 3 cut(s) 213, 324, 554
MalI GATC 6 cut(s) 201, 219, 248, 298, 434, 564
MboI GATC 6 cut(s) 199, 217, 246, 296, 432, 562
MboII GAAGA 6 cut(s) 118, 209, 306, 315, 464, 668
MfeI CAATTG 1 cut(s) 271
MflI RGATCY 2 cut(s) 199, 217
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 7 cut(s) 28, 180, 238, 271, 390, 499, 645
MlyI GAGTC 1 cut(s) 595
MmeI TCCRAC 2 cut(s) 340, 500
MnlI CCTC 5 cut(s) 86, 112, 115, 127, 273
MseI TTAA 1 cut(s) 569
MslI CAYNNNNRTG 2 cut(s) 113, 586
MspI CCGG 1 cut(s) 81
MunI CAATTG 1 cut(s) 271
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 661, 751
NdeI CATATG 1 cut(s) 404
NdeII GATC 6 cut(s) 199, 217, 246, 296, 432, 562
NlaIII CATG 4 cut(s) 496, 532, 552, 655
NspI RCATGY 1 cut(s) 655
PaeI GCATGC 1 cut(s) 655
PagI TCATGA 1 cut(s) 492
PciSI GCTCTTC 3 cut(s) 131, 298, 447
PfeI GAWTC 2 cut(s) 209, 416
Pfl23II CGTACG 1 cut(s) 139
PflMI CCANNNNNTGG 1 cut(s) 31
PkrI GCNGC 5 cut(s) 86, 288, 459, 462, 480
Ple19I CGATCG 1 cut(s) 249
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
Psp124BI GAGCTC 1 cut(s) 310
PspLI CGTACG 1 cut(s) 139
PstI CTGCAG 1 cut(s) 462
PsuI RGATCY 2 cut(s) 199, 217
PvuI CGATCG 1 cut(s) 249
RsaI GTAC 3 cut(s) 41, 141, 692
RsaNI GTAC 3 cut(s) 40, 140, 691
RseI CAYNNNNRTG 2 cut(s) 113, 586
SacI GAGCTC 1 cut(s) 310
SapI GCTCTTC 3 cut(s) 131, 298, 447
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 5 cut(s) 85, 287, 458, 461, 479
Sau3AI GATC 6 cut(s) 199, 217, 246, 296, 432, 562
SchI GAGTC 1 cut(s) 595
SduI GDGCHC 1 cut(s) 310
SetI ASST 8 cut(s) 138, 288, 310, 459, 480, 518, 614, 629
SfaNI GCATC 1 cut(s) 673
SfcI CTRYAG 2 cut(s) 64, 458
SmiMI CAYNNNNRTG 2 cut(s) 113, 586
SphI GCATGC 1 cut(s) 655
Sse9I AATT 7 cut(s) 28, 180, 238, 271, 390, 499, 645
SsiI CCGC 2 cut(s) 84, 573
SspMI CTAG 3 cut(s) 213, 324, 554
SstI GAGCTC 1 cut(s) 310
TaaI ACNGT 1 cut(s) 695
TaqI TCGA 1 cut(s) 474
TasI AATT 7 cut(s) 28, 180, 238, 271, 390, 499, 645
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 2 cut(s) 209, 416
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TscAI CASTG 3 cut(s) 415, 700, 711
TseI GCWGC 4 cut(s) 286, 457, 460, 478
TspDTI ATGAA 5 cut(s) 29, 181, 465, 481, 545
TspRI CASTG 3 cut(s) 415, 700, 711
Van91I CCANNNNNTGG 1 cut(s) 31
XapI RAATTY 3 cut(s) 28, 180, 390
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 1 cut(s) 655
XcmI CCANNNNNNNNNTGG 1 cut(s) 585
XspI CTAG 3 cut(s) 213, 324, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.