Rh4AG069700

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002048
Physical Location & Seq
Reverse (-)
14495750 .. 14501787
6038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG069700.1

Sequence Viewer

Length: 180 bp
ATGGCCACCACTATCAACGAAGATTTCTACAGCCGTACCCTCTCCGGCGGCGTCATCACTCTCGCCTCCTCCATCGTTATGCTCCTGCTCTTCTCCGAGTGTGTTTACATCGGTTTTTGGGAGTTAATGGATTATGAAATCATGAGGTTGAGATTTTTGCAAATGAAGGATACTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

59

Amino Acids

6.85

Weight (kDa)

4.44

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 1 cut(s) 37
AoxI GGCC 1 cut(s) 3
BaeI ACNNNNGTAYC 2 cut(s) 19, 52
BalI TGGCCA 1 cut(s) 5
BccI CCATC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 18
BciVI GTATCC 1 cut(s) 163
BfmI CTRYAG 1 cut(s) 28
BfuI GTATCC 1 cut(s) 163
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 58
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 45
BsnI GGCC 1 cut(s) 5
BspACI CCGC 1 cut(s) 48
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 141
BspQI GCTCTTC 1 cut(s) 95
BssNI GRCGYC 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 28
BsuI GTATCC 1 cut(s) 163
BsuRI GGCC 1 cut(s) 5
CciI TCATGA 1 cut(s) 141
CseI GACGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 36
CviAII CATG 1 cut(s) 142
CviJI RGCY 2 cut(s) 5, 33
CviKI_1 RGCY 2 cut(s) 5, 33
CviQI GTAC 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
FaeI CATG 1 cut(s) 145
FaiI YATR 3 cut(s) 80, 135, 143
FatI CATG 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 49
GluI GCNGC 1 cut(s) 49
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 45
HgaI GACGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 1 cut(s) 145
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 1 cut(s) 145
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 2 cut(s) 58, 98
MboII GAAGA 2 cut(s) 32, 82
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 50, 76, 79, 138
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 125
MslI CAYNNNNRTG 1 cut(s) 77
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 45
NlaIII CATG 1 cut(s) 145
PagI TCATGA 1 cut(s) 141
PciSI GCTCTTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 50
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 1 cut(s) 49
SetI ASST 1 cut(s) 149
SfcI CTRYAG 1 cut(s) 28
SgeI CNNG 5 cut(s) 57, 74, 97, 109, 154
SmiMI CAYNNNNRTG 1 cut(s) 77
SsiI CCGC 1 cut(s) 48
TauI GCSGC 1 cut(s) 51
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 150, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.