Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Reverse (-)

2085907 .. 2087099

Gene Structure 1193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAACATCGACCCCAAAGGCACTGTCGTTTTCTCCACCGTTGGCAGACCCCATTATGCCTTTGACATTTTCGCCCTCCCCATCCTCCTCCACCCCTCCTCCACCAATATCGACCCTGAGCGCCGCCTCTCTGACGGCCGTTCCATCAACTTCAACGCCCAATTCGCCGACAACAACCACGAACCCCACTCCCTCGTCTTCATCTCCGAGCGAACCGGGTTTCCCGCCATTTACTTAACCCGCCCTCTTCCATCTCCTTCTCTCTACGATCGACCCATCATAAAAAATCACACCCTCTACTTCGTTTCAGCTCACAACGATCCTAGTCGATACTTCAAATCCTGGTCTGCTCTCTACTCCTCCACACTCATCCATGATAAAATCACAACCCGATTGACTCCCTCTGGCTCCGTCGATTACAGTCCTGCTCTCTCTCTCTCTCTCTCCAGAAAATTTGTCGCCGTAACCCATAGGGCGATGAGTTTCACGAGCTCAACACTGATATTCGAAGCATCGCAACCCAGCAAGCGCGTACTTGTCTGCGAGTGCGGTGGCTGGCCCACCTGGTCCGGCGACTCCGCCATATATTTTCACCGCCAACATGACGACGACTGGTGGAGCATTTTTTCTGGTCGATTTCCATTTTCTCAAAGATCTGGGTTCCCAGTCTCTCCCACTCGAGTCACTCCATCGGGGCTCCACTGCTTCACTCCGGCAACTCTCCAAGACGGCAAACAAATCCCCGATGCTACTCGCCGGCCCGGTAAGAATTTCCGACACATTGAGCTCTTTGATGTCGAATCCAAGACGTTTGAGCCGATGACAGAGATCATGAACCCGAATTTCCACCATTACAACCCGTTTTTGGGCGAGTCTGATTCCACAATTCCTTATATCGAGCAAGTGTCTTCGCCTATTGAACAACTCCAGATGCTGAGGATTCAGGGTTCATTCCCAACCTTCTCTCTGAGCGGCGATCTGATCGCGTATAATCAGAATTTGGATGGGAATAGCGGAATCAAGCTTATCAAATCGGACGACTTAAACCGCTGGAATTTGATCAAGGGCTGGGCAACCTTCTACAACGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPPIV_N PD40

Protein Analysis

364

Amino Acids

41.1

Weight (kDa)

7.25

Isoelectric Point (pI)

59.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	972
AccII	CGCG	2 cut(s)	531, 986
AciI	CCGC	9 cut(s)	124, 225, 241, 549, 579, 595, 972, 1014, 1048
AclWI	GGATC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	5 cut(s)	452, 769, 841, 997, 1054
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	2 cut(s)	865, 866
AgsI	TTSAA	3 cut(s)	154, 337, 920
AjnI	CCWGG	2 cut(s)	341, 563
AloI	GAACNNNNNNTCC	4 cut(s)	205, 237, 931, 963
AluBI	AGCT	4 cut(s)	311, 492, 787, 1024
AluI	AGCT	4 cut(s)	311, 492, 787, 1024
Alw21I	GWGCWC	2 cut(s)	494, 789
Alw26I	GTCTC	1 cut(s)	673
AlwI	GGATC	1 cut(s)	314
AlwNI	CAGNNNCTG	1 cut(s)	934
Ama87I	CYCGRG	1 cut(s)	678
AoxI	GGCC	3 cut(s)	136, 557, 758
ApoI	RAATTY	5 cut(s)	452, 769, 841, 997, 1054
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
AspLEI	GCGC	2 cut(s)	123, 531
AspS9I	GGNCC	3 cut(s)	558, 567, 759
AsuC2I	CCSGG	2 cut(s)	217, 762
AsuHPI	GGTGA	1 cut(s)	584
AsuII	TTCGAA	1 cut(s)	507
AvaI	CYCGRG	1 cut(s)	678
AvaII	GGWCC	1 cut(s)	567
BanII	GRGCYC	3 cut(s)	494, 699, 789
BauI	CACGAG	1 cut(s)	487
BbsI	GAAGAC	2 cut(s)	190, 900
Bbv12I	GWGCWC	2 cut(s)	494, 789
BbvCI	CCTCAGC	1 cut(s)	935
BccI	CCATC	6 cut(s)	89, 152, 259, 284, 697, 998
BceAI	ACGGC	4 cut(s)	123, 151, 446, 745
BciT130I	CCWGG	2 cut(s)	343, 565
BclI	TGATCA	1 cut(s)	1059
BcnI	CCSGG	2 cut(s)	217, 762
BcoDI	GTCTC	1 cut(s)	673
BfaI	CTAG	2 cut(s)	324, 1090
BfoI	RGCGCY	1 cut(s)	124
BglII	AGATCT	1 cut(s)	653
BisI	GCNGC	2 cut(s)	124, 973
BlsI	GCNGC	2 cut(s)	125, 974
Bme1390I	CCNGG	4 cut(s)	217, 343, 565, 762
Bme18I	GGWCC	1 cut(s)	567
BmeT110I	CYCGRG	1 cut(s)	678
BmgT120I	GGNCC	3 cut(s)	558, 567, 759
BmiI	GGNNCC	3 cut(s)	409, 662, 698
BmrFI	CCNGG	4 cut(s)	217, 343, 565, 762
BmrI	ACTGGG	1 cut(s)	659
BmsI	GCATC	3 cut(s)	521, 736, 921
BmuI	ACTGGG	1 cut(s)	659
BpiI	GAAGAC	2 cut(s)	190, 900
BpmI	CTGGAG	2 cut(s)	430, 911
Bpu10I	CCTNAGC	2 cut(s)	117, 935
Bpu14I	TTCGAA	1 cut(s)	507
BpuMI	CCSGG	2 cut(s)	217, 762
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	865, 866
Bse118I	RCCGGY	1 cut(s)	756
Bse1I	ACTGG	2 cut(s)	617, 665
BseBI	CCWGG	2 cut(s)	343, 565
BseGI	GGATG	3 cut(s)	81, 369, 1009
BseLI	CCNNNNNNNGG	2 cut(s)	865, 866
BseMII	CTCAG	3 cut(s)	108, 926, 959
BseNI	ACTGG	2 cut(s)	617, 665
BseRI	GAGGAG	3 cut(s)	77, 88, 349
BseX3I	CGGCCG	1 cut(s)	136
BseYI	CCCAGC	2 cut(s)	521, 1068
Bsh1236I	CGCG	2 cut(s)	531, 986
Bsh1285I	CGRYCG	2 cut(s)	139, 271
BshFI	GGCC	3 cut(s)	138, 559, 760
BsiEI	CGRYCG	2 cut(s)	139, 271
BsiHKAI	GWGCWC	2 cut(s)	494, 789
BsiHKCI	CYCGRG	1 cut(s)	678
BsiSI	CCGG	5 cut(s)	216, 570, 713, 757, 762
BslI	CCNNNNNNNGG	2 cut(s)	865, 866
BsmAI	GTCTC	1 cut(s)	673
BsnI	GGCC	3 cut(s)	138, 559, 760
BsoBI	CYCGRG	1 cut(s)	678
Bsp119I	TTCGAA	1 cut(s)	507
Bsp1286I	GDGCHC	3 cut(s)	494, 699, 789
Bsp143I	GATC	7 cut(s)	268, 319, 653, 828, 976, 981, 1059
BspACI	CCGC	9 cut(s)	124, 225, 241, 549, 579, 595, 972, 1014, 1048
BspANI	GGCC	3 cut(s)	138, 559, 760
BspCNI	CTCAG	3 cut(s)	109, 927, 960
BspFNI	CGCG	2 cut(s)	531, 986
BspHI	TCATGA	1 cut(s)	831
BspLI	GGNNCC	3 cut(s)	409, 662, 698
BspPI	GGATC	1 cut(s)	314
BspT104I	TTCGAA	1 cut(s)	507
BsrBI	CCGCTC	1 cut(s)	972
BsrFI	RCCGGY	1 cut(s)	756
BsrI	ACTGG	2 cut(s)	617, 665
BssAI	RCCGGY	1 cut(s)	756
BssMI	GATC	7 cut(s)	268, 319, 653, 828, 976, 981, 1059
BssSI	CACGAG	1 cut(s)	487
Bst2BI	CACGAG	1 cut(s)	487
Bst2UI	CCWGG	2 cut(s)	343, 565
Bst4CI	ACNGT	3 cut(s)	25, 40, 422
Bst6I	CTCTTC	1 cut(s)	252
BstBI	TTCGAA	1 cut(s)	507
BstC8I	GCNNGC	3 cut(s)	527, 557, 758
BstDEI	CTNAG	3 cut(s)	117, 935, 968
BstF5I	GGATG	3 cut(s)	81, 369, 1009
BstFNI	CGCG	2 cut(s)	531, 986
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	2 cut(s)	123, 531
BstKTI	GATC	7 cut(s)	271, 322, 656, 831, 979, 984, 1062
BstMAI	GTCTC	1 cut(s)	673
BstMBI	GATC	7 cut(s)	268, 319, 653, 828, 976, 981, 1059
BstMCI	CGRYCG	2 cut(s)	139, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	2 cut(s)	343, 565
BstSCI	CCNGG	4 cut(s)	215, 341, 563, 760
BstUI	CGCG	2 cut(s)	531, 986
BstV2I	GAAGAC	2 cut(s)	190, 900
BstX2I	RGATCY	1 cut(s)	653
BstYI	RGATCY	1 cut(s)	653
BstZI	CGGCCG	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	138, 559, 760
BtgZI	GCGATG	2 cut(s)	491, 498
BtsCI	GGATG	3 cut(s)	81, 369, 1009
BtsI	GCAGTG	1 cut(s)	700
BtsIMutI	CAGTG	3 cut(s)	21, 497, 700
Cac8I	GCNNGC	3 cut(s)	527, 557, 758
CaiI	CAGNNNCTG	1 cut(s)	934
CciI	TCATGA	1 cut(s)	831
CfoI	GCGC	2 cut(s)	123, 531
Cfr10I	RCCGGY	1 cut(s)	756
Cfr13I	GGNCC	3 cut(s)	558, 567, 759
CsiI	ACCWGGT	1 cut(s)	563
Csp6I	GTAC	1 cut(s)	533
CviAII	CATG	3 cut(s)	374, 602, 832
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	3 cut(s)	117, 935, 968
DpnI	GATC	7 cut(s)	270, 321, 655, 830, 978, 983, 1061
DpnII	GATC	7 cut(s)	268, 319, 653, 828, 976, 981, 1059
EaeI	YGGCCR	1 cut(s)	136
EagI	CGGCCG	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	568
Ecl136II	GAGCTC	2 cut(s)	492, 787
EclXI	CGGCCG	1 cut(s)	136
Eco24I	GRGCYC	3 cut(s)	494, 699, 789
Eco47I	GGWCC	1 cut(s)	567
Eco52I	CGGCCG	1 cut(s)	136
Eco53kI	GAGCTC	2 cut(s)	492, 787
Eco88I	CYCGRG	1 cut(s)	678
EcoICRI	GAGCTC	2 cut(s)	492, 787
EcoRII	CCWGG	2 cut(s)	341, 563
EcoT38I	GRGCYC	3 cut(s)	494, 699, 789
FaeI	CATG	3 cut(s)	377, 605, 835
FatI	CATG	3 cut(s)	373, 601, 831
FauI	CCCGC	2 cut(s)	232, 248
FbaI	TGATCA	1 cut(s)	1059
Fnu4HI	GCNGC	2 cut(s)	124, 973
FokI	GGATG	3 cut(s)	68, 356, 1016
FriOI	GRGCYC	3 cut(s)	494, 699, 789
Fsp4HI	GCNGC	2 cut(s)	124, 973
FspBI	CTAG	2 cut(s)	324, 1090
GlaI	GCGC	2 cut(s)	122, 530
GluI	GCNGC	2 cut(s)	124, 973
GsaI	CCCAGC	2 cut(s)	525, 1072
GsuI	CTGGAG	2 cut(s)	430, 911
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	138, 559, 760
HapII	CCGG	5 cut(s)	216, 570, 713, 757, 762
HhaI	GCGC	2 cut(s)	123, 531
Hin1II	CATG	3 cut(s)	377, 605, 835
Hin6I	GCGC	2 cut(s)	121, 529
HinP1I	GCGC	2 cut(s)	121, 529
HindIII	AAGCTT	1 cut(s)	1022
HinfI	GANTC	8 cut(s)	397, 575, 681, 800, 872, 878, 940, 1017
HpaII	CCGG	5 cut(s)	216, 570, 713, 757, 762
HphI	GGTGA	1 cut(s)	584
Hpy188I	TCNGA	8 cut(s)	133, 208, 776, 877, 969, 981, 996, 1036
Hpy188III	TCNNGA	4 cut(s)	447, 487, 832, 928
Hpy99I	CGWCG	2 cut(s)	416, 611
HpyAV	CCTTC	3 cut(s)	267, 970, 1087
HpyCH4III	ACNGT	3 cut(s)	25, 40, 422
HpyCH4IV	ACGT	1 cut(s)	809
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	3 cut(s)	117, 935, 968
HpySE526I	ACGT	1 cut(s)	809
Hsp92II	CATG	3 cut(s)	377, 605, 835
HspAI	GCGC	2 cut(s)	121, 529
KroI	GCCGGC	1 cut(s)	756
KroNI	GCCGGC	1 cut(s)	758
Ksp22I	TGATCA	1 cut(s)	1059
Kzo9I	GATC	7 cut(s)	268, 319, 653, 828, 976, 981, 1059
LmnI	GCTCC	3 cut(s)	413, 618, 702
LweI	GCATC	3 cut(s)	521, 736, 921
MabI	ACCWGGT	1 cut(s)	563
MaeI	CTAG	2 cut(s)	324, 1090
MaeII	ACGT	1 cut(s)	809
MaeIII	GTNAC	2 cut(s)	463, 682
MalI	GATC	7 cut(s)	270, 321, 655, 830, 978, 983, 1061
MbiI	CCGCTC	1 cut(s)	972
MboI	GATC	7 cut(s)	268, 319, 653, 828, 976, 981, 1059
MboII	GAAGA	3 cut(s)	190, 239, 900
MflI	RGATCY	1 cut(s)	653
MhlI	GDGCHC	3 cut(s)	494, 699, 789
MluCI	AATT	7 cut(s)	161, 452, 769, 841, 885, 997, 1054
MlyI	GAGTC	4 cut(s)	391, 569, 690, 881
MmeI	TCCRAC	1 cut(s)	799
MroNI	GCCGGC	1 cut(s)	756
MseI	TTAA	2 cut(s)	236, 1043
MspA1I	CMGCKG	1 cut(s)	1050
MspI	CCGG	5 cut(s)	216, 570, 713, 757, 762
MspR9I	CCNGG	4 cut(s)	217, 343, 565, 762
MvaI	CCWGG	2 cut(s)	343, 565
MvnI	CGCG	2 cut(s)	531, 986
MwoI	GCNNNNNNNGC	1 cut(s)	164
NaeI	GCCGGC	1 cut(s)	758
NciI	CCSGG	2 cut(s)	217, 762
NdeII	GATC	7 cut(s)	268, 319, 653, 828, 976, 981, 1059
NgoMIV	GCCGGC	1 cut(s)	756
NlaIII	CATG	3 cut(s)	377, 605, 835
NlaIV	GGNNCC	3 cut(s)	409, 662, 698
NmuCI	GTSAC	1 cut(s)	682
NspV	TTCGAA	1 cut(s)	507
PaeR7I	CTCGAG	1 cut(s)	678
PagI	TCATGA	1 cut(s)	831
PcsI	WCGNNNNNNNCGW	1 cut(s)	815
PdiI	GCCGGC	1 cut(s)	758
PfeI	GAWTC	4 cut(s)	800, 878, 940, 1017
PkrI	GCNGC	2 cut(s)	125, 974
Ple19I	CGATCG	1 cut(s)	271
PleI	GAGTC	4 cut(s)	391, 569, 689, 880
PpsI	GAGTC	4 cut(s)	391, 569, 689, 880
Psp124BI	GAGCTC	2 cut(s)	494, 789
Psp6I	CCWGG	2 cut(s)	341, 563
PspFI	CCCAGC	2 cut(s)	521, 1068
PspGI	CCWGG	2 cut(s)	341, 563
PspN4I	GGNNCC	3 cut(s)	409, 662, 698
PspPI	GGNCC	3 cut(s)	558, 567, 759
PspXI	VCTCGAGB	1 cut(s)	678
PstNI	CAGNNNCTG	1 cut(s)	934
PsuI	RGATCY	1 cut(s)	653
PvuI	CGATCG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
SacI	GAGCTC	2 cut(s)	494, 789
SaqAI	TTAA	2 cut(s)	236, 1043
SatI	GCNGC	2 cut(s)	124, 973
Sau3AI	GATC	7 cut(s)	268, 319, 653, 828, 976, 981, 1059
Sau96I	GGNCC	3 cut(s)	558, 567, 759
SchI	GAGTC	4 cut(s)	391, 569, 690, 881
ScrFI	CCNGG	4 cut(s)	217, 343, 565, 762
SduI	GDGCHC	3 cut(s)	494, 699, 789
SetI	ASST	8 cut(s)	313, 494, 566, 789, 812, 962, 1026, 1079
SexAI	ACCWGGT	1 cut(s)	563
SfaNI	GCATC	3 cut(s)	521, 736, 921
Sfr274I	CTCGAG	1 cut(s)	678
SfuI	TTCGAA	1 cut(s)	507
SinI	GGWCC	1 cut(s)	567
SlaI	CTCGAG	1 cut(s)	678
SmlI	CTYRAG	1 cut(s)	678
SmoI	CTYRAG	1 cut(s)	678
Sse9I	AATT	7 cut(s)	161, 452, 769, 841, 885, 997, 1054
SsiI	CCGC	9 cut(s)	124, 225, 241, 549, 579, 595, 972, 1014, 1048
SspMI	CTAG	2 cut(s)	324, 1090
SstI	GAGCTC	2 cut(s)	494, 789
StyD4I	CCNGG	4 cut(s)	215, 341, 563, 760
TaaI	ACNGT	3 cut(s)	25, 40, 422
TaiI	ACGT	1 cut(s)	812
TasI	AATT	7 cut(s)	161, 452, 769, 841, 885, 997, 1054
TauI	GCSGC	2 cut(s)	126, 975
TfiI	GAWTC	4 cut(s)	800, 878, 940, 1017
Tru1I	TTAA	2 cut(s)	236, 1043
Tru9I	TTAA	2 cut(s)	236, 1043
TscAI	CASTG	3 cut(s)	28, 504, 707
TseFI	GTSAC	1 cut(s)	682
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	4 cut(s)	17, 190, 848, 939
TspGWI	ACGGA	1 cut(s)	400
TspRI	CASTG	3 cut(s)	28, 504, 707
VpaK11BI	GGWCC	1 cut(s)	567
XapI	RAATTY	5 cut(s)	452, 769, 841, 997, 1054
XhoI	CTCGAG	1 cut(s)	678
XspI	CTAG	2 cut(s)	324, 1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.