Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Reverse (-)

65564035 .. 65564553

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51753

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCCTTCTTATATTTGTTTCCCATATTACCCTTCTTCTCCAACCATTTTTCTTCAGTCTCTCTCTCTCTGTCATCGAATCCCAAATCCCCAACTGCTGCATTCAGTGCCCGGAAGCCTCCTCCAAGACCGATCCATCATCAAGGACGGCAAACTCTACCTCATCTCAGCTCACGAACAGCCCGATCGGCTTTTCAAGAGCTGGTCTGCTCTCTACTCCACTGAGCTTGATGATCAGAACGAAAAGAAAACCACCCGATTGACTCCACCCGGGTCCGTCGATTACAGTCCGACAGTTTATCTCTCGGCGAGTTCGTCGCCGTCACTTCTTATGGCTCTCGTCCCTGGGACAACGAGTTTCACTAGCTTAATACTGACATCGTCGTCTTCCGAGCTTCACAACCCGGAAAGCGTGTGGTGGTCTGTGTGCGTGGCTGGTTGTCCGCTTGGTCCGGCGATTCCGTCATCTACTTTCATCACTAAGACTACGACGGCTGGTGAAACCCGATTTCTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPPIV_N PD40

Protein Analysis

172

Amino Acids

18.8

Weight (kDa)

6.39

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	382
AciI	CCGC	1 cut(s)	443
AclWI	GGATC	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	5 cut(s)	170, 201, 226, 366, 394
AluI	AGCT	5 cut(s)	170, 201, 226, 366, 394
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	126
Ama87I	CYCGRG	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	273, 449
AsuC2I	CCSGG	4 cut(s)	111, 270, 271, 404
AsuHPI	GGTGA	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	2 cut(s)	273, 449
BaeGI	GKGCMC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	3 cut(s)	163, 304, 507
BciT130I	CCWGG	1 cut(s)	345
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	4 cut(s)	111, 270, 271, 404
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	363
BglI	GCCNNNNNGGC	1 cut(s)	187
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
Bme1390I	CCNGG	5 cut(s)	111, 270, 271, 345, 404
Bme18I	GGWCC	2 cut(s)	273, 449
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	2 cut(s)	273, 449
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	5 cut(s)	111, 270, 271, 345, 404
BpiI	GAAGAC	1 cut(s)	378
BpuMI	CCSGG	4 cut(s)	111, 270, 271, 404
BsaJI	CCNNGG	3 cut(s)	269, 343, 344
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	3 cut(s)	269, 343, 344
BseMII	CTCAG	2 cut(s)	180, 213
BseRI	GAGGAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	187
BsiEI	CGRYCG	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	4 cut(s)	111, 270, 404, 452
BslFI	GGGAC	2 cut(s)	326, 361
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	2 cut(s)	326, 361
BsmI	GAATGC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	3 cut(s)	131, 184, 232
BspACI	CCGC	1 cut(s)	443
BspCNI	CTCAG	2 cut(s)	179, 214
BspLI	GGNNCC	1 cut(s)	274
BspPI	GGATC	1 cut(s)	126
BssECI	CCNNGG	3 cut(s)	269, 343, 344
BssMI	GATC	3 cut(s)	131, 184, 232
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	287, 295
BstAPI	GCANNNNNTGC	1 cut(s)	106
BstDEI	CTNAG	3 cut(s)	166, 222, 480
BstKTI	GATC	3 cut(s)	134, 187, 235
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	3 cut(s)	131, 184, 232
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 187
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	5 cut(s)	109, 268, 269, 343, 402
BstSLI	GKGCMC	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	84
BstV2I	GAAGAC	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	111, 219
Cfr13I	GGNCC	2 cut(s)	273, 449
Cfr9I	CCCGGG	1 cut(s)	269
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
DdeI	CTNAG	3 cut(s)	166, 222, 480
DpnI	GATC	3 cut(s)	133, 186, 234
DpnII	GATC	3 cut(s)	131, 184, 232
DrdI	GACNNNNNNGTC	1 cut(s)	382
DseDI	GACNNNNNNGTC	1 cut(s)	382
Eco47I	GGWCC	2 cut(s)	273, 449
Eco57I	CTGAAG	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	343
FaiI	YATR	3 cut(s)	12, 25, 332
FaqI	GGGAC	2 cut(s)	326, 361
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	98
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	1 cut(s)	98
HapII	CCGG	4 cut(s)	111, 270, 404, 452
HinfI	GANTC	3 cut(s)	78, 262, 457
HpaII	CCGG	4 cut(s)	111, 270, 404, 452
HphI	GGTGA	1 cut(s)	509
Hpy188I	TCNGA	3 cut(s)	237, 291, 391
Hpy188III	TCNNGA	3 cut(s)	173, 196, 516
Hpy99I	CGWCG	4 cut(s)	281, 319, 385, 493
HpyAV	CCTTC	2 cut(s)	15, 42
HpyCH4III	ACNGT	2 cut(s)	287, 295
HpyCH4V	TGCA	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 187
HpyF3I	CTNAG	3 cut(s)	166, 222, 480
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	3 cut(s)	131, 184, 232
LpnPI	CCDG	9 cut(s)	124, 187, 283, 330, 357, 417, 420, 465, 480
Lsp1109I	GCAGC	1 cut(s)	84
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	321
MalI	GATC	3 cut(s)	133, 186, 234
MboI	GATC	3 cut(s)	131, 184, 232
MboII	GAAGA	3 cut(s)	27, 44, 378
MhlI	GDGCHC	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	256
MmeI	TCCRAC	2 cut(s)	65, 314
MnlI	CCTC	3 cut(s)	128, 131, 170
MseI	TTAA	1 cut(s)	368
MspI	CCGG	4 cut(s)	111, 270, 404, 452
MspR9I	CCNGG	5 cut(s)	111, 270, 271, 345, 404
Mva1269I	GAATGC	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	106, 187
NciI	CCSGG	4 cut(s)	111, 270, 271, 404
NdeII	GATC	3 cut(s)	131, 184, 232
NlaIV	GGNNCC	1 cut(s)	274
NmeAIII	GCCGAG	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	321
PasI	CCCWGGG	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 311
PctI	GAATGC	1 cut(s)	100
PfeI	GAWTC	2 cut(s)	78, 457
PflFI	GACNNNGTC	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	99
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	2 cut(s)	273, 449
PsyI	GACNNNGTC	1 cut(s)	379
PvuI	CGATCG	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	368
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	3 cut(s)	131, 184, 232
Sau96I	GGNCC	2 cut(s)	273, 449
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	5 cut(s)	111, 270, 271, 345, 404
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	6 cut(s)	162, 172, 203, 228, 368, 396
SinI	GGWCC	2 cut(s)	273, 449
SmaI	CCCGGG	1 cut(s)	271
SsiI	CCGC	1 cut(s)	443
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	5 cut(s)	109, 268, 269, 343, 402
TaaI	ACNGT	2 cut(s)	287, 295
TaqI	TCGA	2 cut(s)	76, 279
TaqII	GACCGA	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	78, 457
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	2 cut(s)	111, 226
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	1 cut(s)	463
TspGWI	ACGGA	2 cut(s)	265, 450
TspMI	CCCGGG	1 cut(s)	269
TspRI	CASTG	2 cut(s)	111, 226
Tth111I	GACNNNGTC	1 cut(s)	379
VpaK11BI	GGWCC	2 cut(s)	273, 449
XmaI	CCCGGG	1 cut(s)	269
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.