Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Reverse (-)

31673843 .. 31676593

Gene Structure 2751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG275100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1929 bp

ATGAAAGCAGTTGAAAGGGCTGCGTTAGGGTTCATGTGCAAGCAGATTATAGACACGGGTAGCTCCTCCCATCTCCCCCTCGAACACCGCCTCACCGACGGCAAATCTATCAACTTCAACGCCCAATTCTCCCACGACCACCACCAATCCATCGTCTTCATCTCCGAGCGATCCGGGTCGCCCGCCATTTACTTAACCCGACCCGGAATCCCCGACCCCCAACTGCTGCATTCCGTGCCCGGAAGCCTCTTCCACGACCGACCCATCATCAAGAACGGCAAGCTCTACTTCATCTCAGCTCACGAACAGCCCGACCGGCTTTTCAAGAGCTGGTCTGCTCTCTACTCCACTCAGCTTGATGGTGAGAACGAAAGGAAAACCACCCGATTGACTCCGCCCGGGTCTGTCGATTACAGTCCGGCCGTTTCTCTCTCCGGCGAGTTCGTCGCCGTCGCTTCCTACGGCTCTCGTCCCTGGGACGGCGAGTTTCACCAGCTCAATACCGACATCGTCGTCTTCCGAGCCTCACAGCCCGGAGAGCGTGTGGTGGTCTGTGAGCGCGGCGGGTGGCCCACTTGGTCCGGCGACTCCGTCATCTACTTTCACCGCCAAGACGACGACGGGTGGTGGGCCATTTTCCGAATTGACTTCCCCCAGGATTTCGAATCCTCTGCATACCCGTTGACACCCACTCGGGTCACTCCGTCGGGTCTCCACTGCTTCACTCCGGCCGCCATGCACGACGGAAAACGAATCGCCCTCGCCACTCGCCGCCGCGACACGAAGTTCCGACACGTGGAGGTCTTCGACGTCGACACGAAGATGTTCCGTCCGGTCACCTCGACGCTGAACCCGGATTTCCACCACTACAACCCATTTGTTTCCCCGGACTCCGAGTTCCTCGGGTACCACCGATTCCGCGGCGAGTCGACTCAGTGGGGCGGCGAGTCGATCATTCCTCACCTGGAGCCGGTATTGTCTCCTGTCACACATCTCCAAATGCTGAGGCTTCACGGCTTCTTCCCGTCCTTCTCTCCCGACGCCGATCTCGTCGCGTTTAATCCCGATTTCCAAGGAAACACCGGCGTCAAAATCGTCAAGTCCGACGGGTCAAAGTGTTGGACTTTAATCAAAGACCGCACGGCCTTCTACAACTGCTGGAGCCCCACAGAGAGACACGTCATATACACATCCATAGGCCCAATCTTCCAGTCAGCAAAGTACACGGTCCAGATCGCGCGAATCGAGTTTGACCCGTCTGATCTGAACGGTGATAAGGAGGACGTCCCATGCAACGTCAAGATCCTCACTCGCGAAGACACAGGGAATAACGCCTTCGCTTCCTGCTCCCCAGACGGCAAGTCGCTCGTGTTCCGATCCGGTCGGACCGGCCACAAGAACCTCTACATTGTCGACGCCGTTAACGGCGAGTTTAACGGCGGAATCCGTCGGTTGACGGAGGGGCCGTGTATTGATACCATGCCGAGCTGGTCGCCCAGAGGAGACCTCATCGCCTTCTCTTCGAACCGGCACAAACCGAACGATGATGCTGTGTTCAGTATTTACGTCATCAACCCGGACGGCTCGGGGTTACGGAGGATCCACGTGGCGGGAGATGACGTGGACAGGGAGAGGATCAACCACGTGTGCTTTAGTAGGGACGGGGAGTGGCTTCTGTTCACGGCTAACTTGGACGGCGTGACGGCTGAGCCGGTGTCGTTTCCGAACCAGTTTCAGCCGTACGGGGATTTGTACGTGGTGAGACTGGACGGGAGTGGGCTGAGGAGGCTGACGTGGAATGGGTACGAGAATGGCACGCCGACGTGGCACACGGGTGATGAGCTGGACCTGGGGCGGCTGCGTTTGGGTCCTTCCGAAGCTGGAGATAAACTCAAGGGTCAATTTGAAGAACCTCATTGGATTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPPIV_N PD40

Protein Analysis

642

Amino Acids

72.19

Weight (kDa)

6.05

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tricorn_N	PF26549	440 - 534	3.9e-10	Tricorn protease N-terminal beta propeller domain
PD40	PF07676	483 - 523	5.6e-06	WD40-like Beta Propeller Repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	512
AatII	GACGTC	2 cut(s)	813, 1287
Acc65I	GGTACC	1 cut(s)	906
AccB1I	GGYRCC	1 cut(s)	906
AccI	GTMKAC	3 cut(s)	813, 929, 1413
AccII	CGCG	7 cut(s)	561, 777, 921, 1055, 1238, 1240, 1314
AclWI	GGATC	6 cut(s)	165, 1297, 1371, 1594, 1607, 1643
AcoI	YGGCCR	3 cut(s)	420, 729, 1390
AcvI	CACGTG	3 cut(s)	796, 1606, 1645
AcyI	GRCGYC	5 cut(s)	810, 1041, 1086, 1284, 1416
AfaI	GTAC	5 cut(s)	908, 1223, 1742, 1754, 1805
AfiI	CCNNNNNNNGG	4 cut(s)	479, 796, 970, 1609
AflIII	ACRYGT	3 cut(s)	793, 1177, 1644
AgsI	TTSAA	4 cut(s)	14, 118, 325, 1907
AhdI	GACNNNNNGTC	1 cut(s)	1360
AjiI	CACGTC	4 cut(s)	1180, 1621, 1794, 1824
AjnI	CCWGG	4 cut(s)	473, 654, 963, 1848
AleI	CACNNNNGTG	1 cut(s)	1833
AloI	GAACNNNNNNTCC	2 cut(s)	881, 913
AluBI	AGCT	9 cut(s)	63, 283, 299, 330, 355, 496, 1488, 1843, 1880
AluI	AGCT	9 cut(s)	63, 283, 299, 330, 355, 496, 1488, 1843, 1880
Alw26I	GTCTC	5 cut(s)	716, 984, 1168, 1497, 1756
AlwI	GGATC	6 cut(s)	165, 1297, 1371, 1594, 1607, 1643
Ama87I	CYCGRG	4 cut(s)	398, 693, 902, 1585
AoxI	GGCC	8 cut(s)	420, 569, 630, 729, 1143, 1198, 1390, 1463
ApeKI	GCWGC	3 cut(s)	20, 226, 1858
Asp700I	GAANNNNTTC	1 cut(s)	824
Asp718I	GGTACC	1 cut(s)	906
AspLEI	GCGC	2 cut(s)	561, 1240
AspS9I	GGNCC	9 cut(s)	570, 579, 630, 1199, 1228, 1386, 1463, 1846, 1868
AsuC2I	CCSGG	9 cut(s)	175, 204, 240, 399, 400, 534, 854, 887, 1577
AsuHPI	GGTGA	9 cut(s)	85, 374, 482, 596, 829, 953, 1283, 1771, 1847
AsuII	TTCGAA	2 cut(s)	663, 1523
AvaI	CYCGRG	4 cut(s)	398, 693, 902, 1585
AvaII	GGWCC	5 cut(s)	579, 1228, 1386, 1846, 1868
BaeGI	GKGCMC	1 cut(s)	240
BamHI	GGATCC	1 cut(s)	1599
BanI	GGYRCC	1 cut(s)	906
BanII	GRGCYC	1 cut(s)	1166
BauI	CACGAG	1 cut(s)	1367
BbrPI	CACGTG	3 cut(s)	796, 1606, 1645
BbsI	GAAGAC	4 cut(s)	148, 508, 796, 1323
BbvCI	CCTCAGC	2 cut(s)	1004, 1781
BbvI	GCAGC	3 cut(s)	7, 213, 1845
BccI	CCATC	4 cut(s)	78, 158, 272, 353
BcgI	CGANNNNNNTGC	4 cut(s)	653, 687, 1348, 1382
BciT130I	CCWGG	4 cut(s)	475, 656, 965, 1850
BcnI	CCSGG	9 cut(s)	175, 204, 240, 399, 400, 534, 854, 887, 1577
BcoDI	GTCTC	5 cut(s)	716, 984, 1168, 1497, 1756
BglI	GCCNNNNNGGC	2 cut(s)	316, 1825
BlpI	GCTNAGC	1 cut(s)	1707
Bme18I	GGWCC	5 cut(s)	579, 1228, 1386, 1846, 1868
BmeRI	GACNNNNNGTC	1 cut(s)	1360
BmeT110I	CYCGRG	4 cut(s)	398, 693, 902, 1585
BmgBI	CACGTC	4 cut(s)	1180, 1621, 1794, 1824
BmgT120I	GGNCC	9 cut(s)	570, 579, 630, 1199, 1228, 1386, 1463, 1846, 1868
BmiI	GGNNCC	6 cut(s)	908, 969, 1163, 1464, 1601, 1869
BmsI	GCATC	1 cut(s)	1537
BpiI	GAAGAC	4 cut(s)	148, 508, 796, 1323
BplI	GAGNNNNNCTC	4 cut(s)	1491, 1523, 1875, 1907
BpmI	CTGGAG	3 cut(s)	986, 1180, 1902
Bpu10I	CCTNAGC	2 cut(s)	1004, 1781
Bpu1102I	GCTNAGC	1 cut(s)	1707
Bpu14I	TTCGAA	2 cut(s)	663, 1523
BpuEI	CTTGAG	1 cut(s)	1877
BpuMI	CCSGG	9 cut(s)	175, 204, 240, 399, 400, 534, 854, 887, 1577
BsaAI	YACGTR	4 cut(s)	796, 1606, 1645, 1756
BsaHI	GRCGYC	5 cut(s)	810, 1041, 1086, 1284, 1416
BsaI	GGTCTC	2 cut(s)	716, 1497
BsaJI	CCNNGG	9 cut(s)	398, 473, 474, 654, 885, 901, 919, 1072, 1849
BsaWI	WCCGGW	2 cut(s)	832, 1379
BsaXI	ACNNNNNCTCC	6 cut(s)	528, 558, 1451, 1481, 1605, 1635
Bsc4I	CCNNNNNNNGG	4 cut(s)	479, 796, 970, 1609
Bse118I	RCCGGY	6 cut(s)	315, 970, 1082, 1388, 1527, 1711
Bse1I	ACTGG	3 cut(s)	1210, 1729, 1770
BseBI	CCWGG	4 cut(s)	475, 656, 965, 1850
BseDI	CCNNGG	9 cut(s)	398, 473, 474, 654, 885, 901, 919, 1072, 1849
BseGI	GGATG	1 cut(s)	1190
BseLI	CCNNNNNNNGG	4 cut(s)	479, 796, 970, 1609
BseMII	CTCAG	6 cut(s)	309, 365, 947, 995, 1698, 1772
BseNI	ACTGG	3 cut(s)	1210, 1729, 1770
BseRI	GAGGAG	3 cut(s)	55, 1515, 1798
BseSI	GKGCMC	1 cut(s)	240
BseX3I	CGGCCG	2 cut(s)	420, 729
BseXI	GCAGC	3 cut(s)	7, 213, 1845
Bsh1236I	CGCG	7 cut(s)	561, 777, 921, 1055, 1238, 1240, 1314
Bsh1285I	CGRYCG	5 cut(s)	259, 316, 423, 732, 1384
BshFI	GGCC	8 cut(s)	422, 571, 632, 731, 1145, 1200, 1392, 1465
BshNI	GGYRCC	1 cut(s)	906
BsiEI	CGRYCG	5 cut(s)	259, 316, 423, 732, 1384
BsiHKCI	CYCGRG	4 cut(s)	398, 693, 902, 1585
BsiWI	CGTACG	1 cut(s)	1740
BslFI	GGGAC	4 cut(s)	456, 491, 1271, 1673
BslI	CCNNNNNNNGG	4 cut(s)	479, 796, 970, 1609
BsmAI	GTCTC	5 cut(s)	716, 984, 1168, 1497, 1756
BsmFI	GGGAC	4 cut(s)	456, 491, 1271, 1673
BsmI	GAATGC	1 cut(s)	229
BsnI	GGCC	8 cut(s)	422, 571, 632, 731, 1145, 1200, 1392, 1465
Bso31I	GGTCTC	2 cut(s)	716, 1497
BsoBI	CYCGRG	4 cut(s)	398, 693, 902, 1585
Bsp119I	TTCGAA	2 cut(s)	663, 1523
Bsp1286I	GDGCHC	2 cut(s)	240, 1166
Bsp143I	GATC	9 cut(s)	170, 951, 1045, 1233, 1261, 1302, 1376, 1599, 1635
Bsp1720I	GCTNAGC	1 cut(s)	1707
Bsp68I	TCGCGA	1 cut(s)	1314
BspANI	GGCC	8 cut(s)	422, 571, 632, 731, 1145, 1200, 1392, 1465
BspCNI	CTCAG	6 cut(s)	308, 364, 946, 996, 1699, 1773
BspFNI	CGCG	7 cut(s)	561, 777, 921, 1055, 1238, 1240, 1314
BspLI	GGNNCC	6 cut(s)	908, 969, 1163, 1464, 1601, 1869
BspPI	GGATC	6 cut(s)	165, 1297, 1371, 1594, 1607, 1643
BspT104I	TTCGAA	2 cut(s)	663, 1523
BspT107I	GGYRCC	1 cut(s)	906
BspTNI	GGTCTC	2 cut(s)	716, 1497
BsrFI	RCCGGY	6 cut(s)	315, 970, 1082, 1388, 1527, 1711
BsrI	ACTGG	3 cut(s)	1210, 1729, 1770
BssAI	RCCGGY	6 cut(s)	315, 970, 1082, 1388, 1527, 1711
BssECI	CCNNGG	9 cut(s)	398, 473, 474, 654, 885, 901, 919, 1072, 1849
BssMI	GATC	9 cut(s)	170, 951, 1045, 1233, 1261, 1302, 1376, 1599, 1635
BssNI	GRCGYC	5 cut(s)	810, 1041, 1086, 1284, 1416
BssSI	CACGAG	1 cut(s)	1367
BssT1I	CCWWGG	1 cut(s)	1072
Bst2BI	CACGAG	1 cut(s)	1367
Bst2UI	CCWGG	4 cut(s)	475, 656, 965, 1850
Bst4CI	ACNGT	3 cut(s)	416, 1228, 1271
Bst6I	CTCTTC	2 cut(s)	254, 1525
BstACI	GRCGYC	5 cut(s)	810, 1041, 1086, 1284, 1416
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstBAI	YACGTR	4 cut(s)	796, 1606, 1645, 1756
BstBI	TTCGAA	2 cut(s)	663, 1523
BstC8I	GCNNGC	4 cut(s)	41, 183, 281, 1817
BstDEI	CTNAG	6 cut(s)	295, 351, 933, 1004, 1707, 1781
BstDSI	CCRYGG	1 cut(s)	919
BstEII	GGTNACC	1 cut(s)	835
BstF5I	GGATG	1 cut(s)	1190
BstFNI	CGCG	7 cut(s)	561, 777, 921, 1055, 1238, 1240, 1314
BstHHI	GCGC	2 cut(s)	561, 1240
BstKTI	GATC	9 cut(s)	173, 954, 1048, 1236, 1264, 1305, 1379, 1602, 1638
BstMAI	GTCTC	5 cut(s)	716, 984, 1168, 1497, 1756
BstMBI	GATC	9 cut(s)	170, 951, 1045, 1233, 1261, 1302, 1376, 1599, 1635
BstMCI	CGRYCG	5 cut(s)	259, 316, 423, 732, 1384
BstMWI	GCNNNNNNNGC	5 cut(s)	235, 316, 538, 1786, 1825
BstNI	CCWGG	4 cut(s)	475, 656, 965, 1850
BstPI	GGTNACC	1 cut(s)	835
BstSLI	GKGCMC	1 cut(s)	240
BstUI	CGCG	7 cut(s)	561, 777, 921, 1055, 1238, 1240, 1314
BstV1I	GCAGC	3 cut(s)	7, 213, 1845
BstV2I	GAAGAC	4 cut(s)	148, 508, 796, 1323
BstX2I	RGATCY	2 cut(s)	1302, 1599
BstYI	RGATCY	2 cut(s)	1302, 1599
BstZI	CGGCCG	2 cut(s)	420, 729
BsuRI	GGCC	8 cut(s)	422, 571, 632, 731, 1145, 1200, 1392, 1465
BtgI	CCRYGG	1 cut(s)	919
BtgZI	GCGATG	1 cut(s)	1495
BtrI	CACGTC	4 cut(s)	1180, 1621, 1794, 1824
BtsCI	GGATG	1 cut(s)	1190
BtsI	GCAGTG	1 cut(s)	715
BtsIMutI	CAGTG	2 cut(s)	715, 941
BtuMI	TCGCGA	1 cut(s)	1314
Cac8I	GCNNGC	4 cut(s)	41, 183, 281, 1817
CfoI	GCGC	2 cut(s)	561, 1240
Cfr10I	RCCGGY	6 cut(s)	315, 970, 1082, 1388, 1527, 1711
Cfr13I	GGNCC	9 cut(s)	570, 579, 630, 1199, 1228, 1386, 1463, 1846, 1868
Cfr42I	CCGCGG	1 cut(s)	922
Cfr9I	CCCGGG	1 cut(s)	398
CpoI	CGGWCCG	1 cut(s)	1386
CseI	GACGC	4 cut(s)	853, 1049, 1075, 1424
Csp6I	GTAC	5 cut(s)	907, 1222, 1741, 1753, 1804
CspCI	CAANNNNNGTGG	2 cut(s)	337, 372
CspI	CGGWCCG	1 cut(s)	1386
CviAII	CATG	4 cut(s)	34, 736, 1290, 1480
CviQI	GTAC	5 cut(s)	907, 1222, 1741, 1753, 1804
DdeI	CTNAG	6 cut(s)	295, 351, 933, 1004, 1707, 1781
DpnI	GATC	9 cut(s)	172, 953, 1047, 1235, 1263, 1304, 1378, 1601, 1637
DpnII	GATC	9 cut(s)	170, 951, 1045, 1233, 1261, 1302, 1376, 1599, 1635
DrdI	GACNNNNNNGTC	1 cut(s)	512
DriI	GACNNNNNGTC	1 cut(s)	1360
DseDI	GACNNNNNNGTC	1 cut(s)	512
EaeI	YGGCCR	3 cut(s)	420, 729, 1390
EagI	CGGCCG	2 cut(s)	420, 729
Eam1104I	CTCTTC	2 cut(s)	254, 1525
Eam1105I	GACNNNNNGTC	1 cut(s)	1360
EarI	CTCTTC	2 cut(s)	254, 1525
EciI	GGCGGA	2 cut(s)	384, 1455
EclXI	CGGCCG	2 cut(s)	420, 729
Eco130I	CCWWGG	1 cut(s)	1072
Eco24I	GRGCYC	1 cut(s)	1166
Eco31I	GGTCTC	2 cut(s)	716, 1497
Eco47I	GGWCC	5 cut(s)	579, 1228, 1386, 1846, 1868
Eco52I	CGGCCG	2 cut(s)	420, 729
Eco72I	CACGTG	3 cut(s)	796, 1606, 1645
Eco88I	CYCGRG	4 cut(s)	398, 693, 902, 1585
Eco91I	GGTNACC	1 cut(s)	835
EcoO109I	RGGNCCY	1 cut(s)	1868
EcoO65I	GGTNACC	1 cut(s)	835
EcoRII	CCWGG	4 cut(s)	473, 654, 963, 1848
EcoT14I	CCWWGG	1 cut(s)	1072
EcoT38I	GRGCYC	1 cut(s)	1166
ErhI	CCWWGG	1 cut(s)	1072
FaeI	CATG	4 cut(s)	37, 739, 1293, 1483
FaiI	YATR	9 cut(s)	35, 50, 676, 737, 1184, 1186, 1196, 1291, 1481
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FaqI	GGGAC	4 cut(s)	456, 491, 1271, 1673
FatI	CATG	4 cut(s)	33, 735, 1289, 1479
FauI	CCCGC	3 cut(s)	190, 557, 1603
FblI	GTMKAC	3 cut(s)	813, 929, 1413
FokI	GGATG	1 cut(s)	1177
FriOI	GRGCYC	1 cut(s)	1166
GlaI	GCGC	2 cut(s)	560, 1239
GsuI	CTGGAG	3 cut(s)	986, 1180, 1902
HaeIII	GGCC	8 cut(s)	422, 571, 632, 731, 1145, 1200, 1392, 1465
HgaI	GACGC	4 cut(s)	853, 1049, 1075, 1424
HhaI	GCGC	2 cut(s)	561, 1240
Hin1I	GRCGYC	5 cut(s)	810, 1041, 1086, 1284, 1416
Hin1II	CATG	4 cut(s)	37, 739, 1293, 1483
Hin6I	GCGC	2 cut(s)	559, 1238
HinP1I	GCGC	2 cut(s)	559, 1238
HincII	GTYRAC	6 cut(s)	684, 814, 930, 1414, 1423, 1455
HindII	GTYRAC	6 cut(s)	684, 814, 930, 1414, 1423, 1455
HpaI	GTTAAC	1 cut(s)	1423
HphI	GGTGA	9 cut(s)	85, 374, 482, 596, 829, 953, 1283, 1771, 1847
Hpy166II	GTNNAC	9 cut(s)	684, 814, 930, 1224, 1414, 1423, 1455, 1624, 1680
Hpy188III	TCNNGA	8 cut(s)	271, 302, 325, 1037, 1064, 1231, 1300, 1313
Hpy8I	GTNNAC	9 cut(s)	684, 814, 930, 1224, 1414, 1423, 1455, 1624, 1680
HpyAV	CCTTC	5 cut(s)	1039, 1156, 1345, 1525, 1881
HpyCH4III	ACNGT	3 cut(s)	416, 1228, 1271
HpyCH4V	TGCA	5 cut(s)	39, 229, 674, 739, 1293
HpyF10VI	GCNNNNNNNGC	5 cut(s)	235, 316, 538, 1786, 1825
HpyF3I	CTNAG	6 cut(s)	295, 351, 933, 1004, 1707, 1781
Hsp92I	GRCGYC	5 cut(s)	810, 1041, 1086, 1284, 1416
Hsp92II	CATG	4 cut(s)	37, 739, 1293, 1483
HspAI	GCGC	2 cut(s)	559, 1238
KpnI	GGTACC	1 cut(s)	910
KspAI	GTTAAC	1 cut(s)	1423
KspI	CCGCGG	1 cut(s)	922
Kzo9I	GATC	9 cut(s)	170, 951, 1045, 1233, 1261, 1302, 1376, 1599, 1635
LmnI	GCTCC	4 cut(s)	68, 967, 1161, 1352
Lsp1109I	GCAGC	3 cut(s)	7, 213, 1845
LweI	GCATC	1 cut(s)	1537
MaeIII	GTNAC	5 cut(s)	697, 835, 985, 1590, 1699
MalI	GATC	9 cut(s)	172, 953, 1047, 1235, 1263, 1304, 1378, 1601, 1637
MboI	GATC	9 cut(s)	170, 951, 1045, 1233, 1261, 1302, 1376, 1599, 1635
MflI	RGATCY	2 cut(s)	1302, 1599
MhlI	GDGCHC	2 cut(s)	240, 1166
MluCI	AATT	3 cut(s)	125, 642, 1901
MlyI	GAGTC	6 cut(s)	385, 581, 884, 925, 935, 956
MmeI	TCCRAC	4 cut(s)	814, 1100, 1128, 1364
MroXI	GAANNNNTTC	1 cut(s)	824
MseI	TTAA	5 cut(s)	194, 1059, 1127, 1422, 1434
MslI	CAYNNNNRTG	2 cut(s)	821, 1833
MspA1I	CMGCKG	1 cut(s)	921
Mva1269I	GAATGC	1 cut(s)	229
MvaI	CCWGG	4 cut(s)	475, 656, 965, 1850
MvnI	CGCG	7 cut(s)	561, 777, 921, 1055, 1238, 1240, 1314
MwoI	GCNNNNNNNGC	5 cut(s)	235, 316, 538, 1786, 1825
NciI	CCSGG	9 cut(s)	175, 204, 240, 399, 400, 534, 854, 887, 1577
NdeII	GATC	9 cut(s)	170, 951, 1045, 1233, 1261, 1302, 1376, 1599, 1635
NlaIII	CATG	4 cut(s)	37, 739, 1293, 1483
NlaIV	GGNNCC	6 cut(s)	908, 969, 1163, 1464, 1601, 1869
NmeAIII	GCCGAG	1 cut(s)	1509
NmuCI	GTSAC	4 cut(s)	697, 835, 985, 1699
NruI	TCGCGA	1 cut(s)	1314
NspV	TTCGAA	2 cut(s)	663, 1523
OliI	CACNNNNGTG	1 cut(s)	1833
PasI	CCCWGGG	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	5 cut(s)	309, 1047, 1101, 1242, 1463
PctI	GAATGC	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	824
PfeI	GAWTC	6 cut(s)	207, 665, 753, 915, 1242, 1443
Pfl23II	CGTACG	1 cut(s)	1740
PflFI	GACNNNGTC	2 cut(s)	509, 590
PleI	GAGTC	6 cut(s)	385, 581, 884, 925, 934, 955
PmaCI	CACGTG	3 cut(s)	796, 1606, 1645
PmlI	CACGTG	3 cut(s)	796, 1606, 1645
PpsI	GAGTC	6 cut(s)	385, 581, 884, 925, 934, 955
Ppu21I	YACGTR	4 cut(s)	796, 1606, 1645, 1756
PpuMI	RGGWCCY	1 cut(s)	1868
Psp5II	RGGWCCY	1 cut(s)	1868
Psp6I	CCWGG	4 cut(s)	473, 654, 963, 1848
PspCI	CACGTG	3 cut(s)	796, 1606, 1645
PspEI	GGTNACC	1 cut(s)	835
PspGI	CCWGG	4 cut(s)	473, 654, 963, 1848
PspLI	CGTACG	1 cut(s)	1740
PspN4I	GGNNCC	6 cut(s)	908, 969, 1163, 1464, 1601, 1869
PspPI	GGNCC	9 cut(s)	570, 579, 630, 1199, 1228, 1386, 1463, 1846, 1868
PspPPI	RGGWCCY	1 cut(s)	1868
PsuI	RGATCY	2 cut(s)	1302, 1599
PsyI	GACNNNGTC	2 cut(s)	509, 590
RruI	TCGCGA	1 cut(s)	1314
RsaI	GTAC	5 cut(s)	908, 1223, 1742, 1754, 1805
RsaNI	GTAC	5 cut(s)	907, 1222, 1741, 1753, 1804
RseI	CAYNNNNRTG	2 cut(s)	821, 1833
Rsr2I	CGGWCCG	1 cut(s)	1386
RsrII	CGGWCCG	1 cut(s)	1386
SacII	CCGCGG	1 cut(s)	922
SalI	GTCGAC	3 cut(s)	812, 928, 1412
SaqAI	TTAA	5 cut(s)	194, 1059, 1127, 1422, 1434
Sau3AI	GATC	9 cut(s)	170, 951, 1045, 1233, 1261, 1302, 1376, 1599, 1635
Sau96I	GGNCC	9 cut(s)	570, 579, 630, 1199, 1228, 1386, 1463, 1846, 1868
SchI	GAGTC	6 cut(s)	385, 581, 884, 925, 935, 956
SduI	GDGCHC	2 cut(s)	240, 1166
SfaNI	GCATC	1 cut(s)	1537
Sfr303I	CCGCGG	1 cut(s)	922
SfuI	TTCGAA	2 cut(s)	663, 1523
SgrAI	CRCCGGYG	1 cut(s)	1082
SgrBI	CCGCGG	1 cut(s)	922
SinI	GGWCC	5 cut(s)	579, 1228, 1386, 1846, 1868
SmaI	CCCGGG	1 cut(s)	400
SmiMI	CAYNNNNRTG	2 cut(s)	821, 1833
SmlI	CTYRAG	1 cut(s)	1892
SmoI	CTYRAG	1 cut(s)	1892
Sse9I	AATT	3 cut(s)	125, 642, 1901
StyI	CCWWGG	1 cut(s)	1072
TaaI	ACNGT	3 cut(s)	416, 1228, 1271
TaqII	GACCGA	1 cut(s)	273
TasI	AATT	3 cut(s)	125, 642, 1901
TatI	WGTACW	1 cut(s)	1221
TauI	GCSGC	7 cut(s)	564, 734, 774, 777, 924, 945, 1858
TfiI	GAWTC	6 cut(s)	207, 665, 753, 915, 1242, 1443
Tru1I	TTAA	5 cut(s)	194, 1059, 1127, 1422, 1434
Tru9I	TTAA	5 cut(s)	194, 1059, 1127, 1422, 1434
TscAI	CASTG	2 cut(s)	722, 941
TseFI	GTSAC	4 cut(s)	697, 835, 985, 1699
TseI	GCWGC	3 cut(s)	20, 226, 1858
Tsp45I	GTSAC	4 cut(s)	697, 835, 985, 1699
TspDTI	ATGAA	4 cut(s)	17, 22, 148, 280
TspGWI	ACGGA	8 cut(s)	223, 580, 693, 759, 818, 1436, 1472, 1609
TspMI	CCCGGG	1 cut(s)	398
TspRI	CASTG	2 cut(s)	722, 941
Tth111I	GACNNNGTC	2 cut(s)	509, 590
VpaK11BI	GGWCC	5 cut(s)	579, 1228, 1386, 1846, 1868
XmaI	CCCGGG	1 cut(s)	398
XmiI	GTMKAC	3 cut(s)	813, 929, 1413
XmnI	GAANNNNTTC	1 cut(s)	824
ZraI	GACGTC	2 cut(s)	811, 1285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.