Rmu_sc0003040.1_g000011

WD40-like Beta Propeller Repeat

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003040.1
Physical Location & Seq
Reverse (-)
41253 .. 42714
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003040.1_g000011.1.cds

Sequence Viewer

Length: 972 bp
atggaggcggaggcaggagtgggtgcacggcgtgtctctcgctctcgctgtcatcgaatcccaaatccccaactgctgcattcagtgcccagaagcctcctccatgaccgacccatcagcaagcacgacaagctctacctcatctcagctcacgaacagcccgatcggcttttcaagagctggtctgctttctactccactgagcttgatgatcagaacgaaaagaaaaccattcgattgactccacctgggtccgtcgattacagtctggccgtttctctcttggcgagttcgtcgccgtctcttcttacggctctcgtccctgggactgtgagtttcaccagctcaatactgacatcatcgtcttccgagcttcacaaccagaaaagcgtgtggtggtctgtgagcgcagcgggttatccgcctggtccggcgactccgtcatctactttcatcgctaagacgacgacggctgttccgacacgtggaggtcgacacgaagacgttccatccagtcacctcgacgctgaacccggatttccaccatttcaacccgttcgtttctccggactcctagttccccgggtaccaccgattccgcggcgagttgactcagtggagcggcgagtcgatattcctcacctagagctagtgtcgtctcctgtcagacatctccaaacgttgaggcttcaccgtttcttcccggccttctctccttacgccgatctcttcgcgtttaatcccgatttcgaaggaaatcccgtcgtcaaaatcttcaagtccgatgggtccaagtgttggactttatgcaaaggccgtacgaccttctacaactgctggagccccacagagagacgtcataaacacatccataggcccaagttttccatcgatcttctgggctgttcaaggtatgaactttcttctactcgttgtgctctacaagctggtataattggttttcagttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

323

Amino Acids

36.05

Weight (kDa)

9.63

Isoelectric Point (pI)

57.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 361
AatII GACGTC 1 cut(s) 859
Acc65I GGTACC 1 cut(s) 586
AccB1I GGYRCC 1 cut(s) 586
AccB7I CCANNNNNTGG 1 cut(s) 798
AccBSI CCGCTC 1 cut(s) 622
AccI GTMKAC 1 cut(s) 493
AccII CGCG 2 cut(s) 601, 734
AccIII TCCGGA 1 cut(s) 566
AciI CCGC 6 cut(s) 8, 413, 422, 599, 601, 622
AclI AACGTT 1 cut(s) 680
AcoI YGGCCR 1 cut(s) 270
AcvI CACGTG 1 cut(s) 485
AcyI GRCGYC 1 cut(s) 856
AdeI CACNNNGTG 1 cut(s) 32
AfaI GTAC 2 cut(s) 588, 820
AfiI CCNNNNNNNGG 2 cut(s) 485, 798
AflIII ACRYGT 1 cut(s) 482
AgsI TTSAA 4 cut(s) 175, 551, 778, 909
AjnI CCWGG 3 cut(s) 247, 322, 424
AloI GAACNNNNNNTCC 2 cut(s) 561, 593
AluBI AGCT 8 cut(s) 133, 149, 180, 205, 345, 373, 649, 947
AluI AGCT 8 cut(s) 133, 149, 180, 205, 345, 373, 649, 947
Alw21I GWGCWC 2 cut(s) 28, 940
Alw26I GTCTC 4 cut(s) 40, 306, 663, 847
Alw44I GTGCAC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 582
Aor13HI TCCGGA 1 cut(s) 566
AoxI GGCC 4 cut(s) 270, 705, 814, 875
ApaLI GTGCAC 1 cut(s) 24
ApeKI GCWGC 2 cut(s) 76, 410
Asp700I GAANNNNTTC 1 cut(s) 504
Asp718I GGTACC 1 cut(s) 586
AspLEI GCGC 1 cut(s) 410
AspS9I GGNCC 4 cut(s) 252, 428, 789, 876
AsuC2I CCSGG 4 cut(s) 534, 583, 584, 704
AsuHPI GGTGA 4 cut(s) 331, 509, 632, 683
AsuII TTCGAA 1 cut(s) 750
AvaI CYCGRG 1 cut(s) 582
AvaII GGWCC 3 cut(s) 252, 428, 789
BaeGI GKGCMC 2 cut(s) 28, 90
BanI GGYRCC 1 cut(s) 586
BanII GRGCYC 1 cut(s) 845
BbrPI CACGTG 1 cut(s) 485
BbsI GAAGAC 2 cut(s) 357, 507
Bbv12I GWGCWC 2 cut(s) 28, 940
BbvI GCAGC 2 cut(s) 63, 422
BccI CCATC 4 cut(s) 122, 517, 779, 896
BceAI ACGGC 6 cut(s) 44, 257, 283, 327, 486, 801
BciT130I CCWGG 3 cut(s) 249, 324, 426
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 4 cut(s) 534, 583, 584, 704
BcoDI GTCTC 4 cut(s) 40, 306, 663, 847
BfaI CTAG 3 cut(s) 575, 644, 650
BglI GCCNNNNNGGC 1 cut(s) 166
BisI GCNGC 4 cut(s) 77, 411, 602, 623
BlsI GCNGC 4 cut(s) 78, 412, 603, 624
Bme1390I CCNGG 7 cut(s) 249, 324, 426, 534, 583, 584, 704
Bme18I GGWCC 3 cut(s) 252, 428, 789
BmeT110I CYCGRG 1 cut(s) 582
BmgT120I GGNCC 4 cut(s) 252, 428, 789, 876
BmiI GGNNCC 4 cut(s) 253, 588, 790, 842
BmrFI CCNGG 7 cut(s) 249, 324, 426, 534, 583, 584, 704
BpiI GAAGAC 2 cut(s) 357, 507
BpmI CTGGAG 1 cut(s) 859
Bpu14I TTCGAA 1 cut(s) 750
BpuMI CCSGG 4 cut(s) 534, 583, 584, 704
Bsa29I ATCGAT 1 cut(s) 891
BsaAI YACGTR 1 cut(s) 485
BsaHI GRCGYC 1 cut(s) 856
BsaJI CCNNGG 6 cut(s) 248, 322, 323, 581, 582, 599
BsaWI WCCGGW 1 cut(s) 566
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 798
Bse1I ACTGG 1 cut(s) 513
BseAI TCCGGA 1 cut(s) 566
BseBI CCWGG 3 cut(s) 249, 324, 426
BseCI ATCGAT 1 cut(s) 891
BseDI CCNNGG 6 cut(s) 248, 322, 323, 581, 582, 599
BseGI GGATG 2 cut(s) 509, 867
BseLI CCNNNNNNNGG 2 cut(s) 485, 798
BseMII CTCAG 3 cut(s) 159, 192, 627
BseNI ACTGG 1 cut(s) 513
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 2 cut(s) 28, 90
BseXI GCAGC 2 cut(s) 63, 422
Bsh1236I CGCG 2 cut(s) 601, 734
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 4 cut(s) 272, 707, 816, 877
BshNI GGYRCC 1 cut(s) 586
BshVI ATCGAT 1 cut(s) 891
BsiEI CGRYCG 1 cut(s) 166
BsiHKAI GWGCWC 2 cut(s) 28, 940
BsiHKCI CYCGRG 1 cut(s) 582
BsiSI CCGG 5 cut(s) 431, 534, 567, 583, 704
BsiWI CGTACG 1 cut(s) 818
BslFI GGGAC 2 cut(s) 305, 340
BslI CCNNNNNNNGG 2 cut(s) 485, 798
BsmAI GTCTC 4 cut(s) 40, 306, 663, 847
BsmBI CGTCTC 3 cut(s) 306, 663, 847
BsmFI GGGAC 2 cut(s) 305, 340
BsmI GAATGC 1 cut(s) 79
BsnI GGCC 4 cut(s) 272, 707, 816, 877
BsoBI CYCGRG 1 cut(s) 582
Bsp119I TTCGAA 1 cut(s) 750
Bsp1286I GDGCHC 4 cut(s) 28, 90, 845, 940
Bsp13I TCCGGA 1 cut(s) 566
Bsp143I GATC 4 cut(s) 163, 211, 724, 892
BspACI CCGC 6 cut(s) 8, 413, 422, 599, 601, 622
BspANI GGCC 4 cut(s) 272, 707, 816, 877
BspCNI CTCAG 3 cut(s) 158, 193, 626
BspDI ATCGAT 1 cut(s) 891
BspEI TCCGGA 1 cut(s) 566
BspFNI CGCG 2 cut(s) 601, 734
BspLI GGNNCC 4 cut(s) 253, 588, 790, 842
BspT104I TTCGAA 1 cut(s) 750
BspT107I GGYRCC 1 cut(s) 586
BsrBI CCGCTC 1 cut(s) 622
BsrI ACTGG 1 cut(s) 513
BssECI CCNNGG 6 cut(s) 248, 322, 323, 581, 582, 599
BssMI GATC 4 cut(s) 163, 211, 724, 892
BssNI GRCGYC 1 cut(s) 856
Bst2UI CCWGG 3 cut(s) 249, 324, 426
Bst4CI ACNGT 3 cut(s) 266, 331, 695
Bst6I CTCTTC 2 cut(s) 309, 734
BstACI GRCGYC 1 cut(s) 856
BstAPI GCANNNNNTGC 1 cut(s) 85
BstBAI YACGTR 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 750
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 4 cut(s) 145, 201, 459, 613
BstDSI CCRYGG 1 cut(s) 599
BstF5I GGATG 2 cut(s) 509, 867
BstFNI CGCG 2 cut(s) 601, 734
BstHHI GCGC 1 cut(s) 410
BstKTI GATC 4 cut(s) 166, 214, 727, 895
BstMAI GTCTC 4 cut(s) 40, 306, 663, 847
BstMBI GATC 4 cut(s) 163, 211, 724, 892
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 4 cut(s) 85, 130, 166, 944
BstNI CCWGG 3 cut(s) 249, 324, 426
BstSCI CCNGG 7 cut(s) 247, 322, 424, 532, 581, 582, 702
BstSLI GKGCMC 2 cut(s) 28, 90
BstUI CGCG 2 cut(s) 601, 734
BstV1I GCAGC 2 cut(s) 63, 422
BstV2I GAAGAC 2 cut(s) 357, 507
Bsu15I ATCGAT 1 cut(s) 891
BsuRI GGCC 4 cut(s) 272, 707, 816, 877
BsuTUI ATCGAT 1 cut(s) 891
BtgI CCRYGG 1 cut(s) 599
BtgZI GCGATG 1 cut(s) 439
BtsCI GGATG 2 cut(s) 509, 867
BtsIMutI CAGTG 3 cut(s) 90, 198, 621
Cac8I GCNNGC 1 cut(s) 122
CfoI GCGC 1 cut(s) 410
Cfr13I GGNCC 4 cut(s) 252, 428, 789, 876
Cfr42I CCGCGG 1 cut(s) 602
Cfr9I CCCGGG 1 cut(s) 582
ClaI ATCGAT 1 cut(s) 891
CseI GACGC 1 cut(s) 533
Csp6I GTAC 2 cut(s) 587, 819
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 1 cut(s) 104
CviQI GTAC 2 cut(s) 587, 819
DdeI CTNAG 4 cut(s) 145, 201, 459, 613
DpnI GATC 4 cut(s) 165, 213, 726, 894
DpnII GATC 4 cut(s) 163, 211, 724, 892
DraIII CACNNNGTG 1 cut(s) 32
DrdI GACNNNNNNGTC 1 cut(s) 361
DseDI GACNNNNNNGTC 1 cut(s) 361
EaeI YGGCCR 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 309, 734
EarI CTCTTC 2 cut(s) 309, 734
EciI GGCGGA 2 cut(s) 23, 411
Eco24I GRGCYC 1 cut(s) 845
Eco47I GGWCC 3 cut(s) 252, 428, 789
Eco72I CACGTG 1 cut(s) 485
Eco88I CYCGRG 1 cut(s) 582
EcoRII CCWGG 3 cut(s) 247, 322, 424
EcoT38I GRGCYC 1 cut(s) 845
Esp3I CGTCTC 3 cut(s) 306, 663, 847
FaeI CATG 1 cut(s) 107
FaiI YATR 6 cut(s) 105, 808, 861, 873, 915, 953
FaqI GGGAC 2 cut(s) 305, 340
FatI CATG 1 cut(s) 103
FauI CCCGC 1 cut(s) 406
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 1 cut(s) 493
Fnu4HI GCNGC 4 cut(s) 77, 411, 602, 623
FokI GGATG 2 cut(s) 496, 854
FriOI GRGCYC 1 cut(s) 845
Fsp4HI GCNGC 4 cut(s) 77, 411, 602, 623
FspBI CTAG 3 cut(s) 575, 644, 650
GlaI GCGC 1 cut(s) 409
GluI GCNGC 4 cut(s) 77, 411, 602, 623
GsuI CTGGAG 1 cut(s) 859
HaeIII GGCC 4 cut(s) 272, 707, 816, 877
HapII CCGG 5 cut(s) 431, 534, 567, 583, 704
HgaI GACGC 1 cut(s) 533
HhaI GCGC 1 cut(s) 410
Hin1I GRCGYC 1 cut(s) 856
Hin1II CATG 1 cut(s) 107
Hin6I GCGC 1 cut(s) 408
HinP1I GCGC 1 cut(s) 408
HincII GTYRAC 2 cut(s) 494, 610
HindII GTYRAC 2 cut(s) 494, 610
HinfI GANTC 7 cut(s) 57, 241, 436, 570, 595, 611, 627
HpaII CCGG 5 cut(s) 431, 534, 567, 583, 704
HphI GGTGA 4 cut(s) 331, 509, 632, 683
Hpy166II GTNNAC 3 cut(s) 26, 494, 610
Hpy188I TCNGA 5 cut(s) 216, 370, 480, 668, 784
Hpy188III TCNNGA 4 cut(s) 152, 175, 567, 743
Hpy8I GTNNAC 3 cut(s) 26, 494, 610
Hpy99I CGWCG 6 cut(s) 260, 298, 469, 472, 527, 767
HpyAV CCTTC 3 cut(s) 718, 746, 835
HpyCH4III ACNGT 3 cut(s) 266, 331, 695
HpyCH4IV ACGT 4 cut(s) 484, 504, 680, 856
HpyCH4V TGCA 3 cut(s) 26, 79, 810
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 130, 166, 944
HpyF3I CTNAG 4 cut(s) 145, 201, 459, 613
HpySE526I ACGT 4 cut(s) 484, 504, 680, 856
Hsp92I GRCGYC 1 cut(s) 856
Hsp92II CATG 1 cut(s) 107
HspAI GCGC 1 cut(s) 408
Kpn2I TCCGGA 1 cut(s) 566
KpnI GGTACC 1 cut(s) 590
Ksp22I TGATCA 1 cut(s) 211
KspI CCGCGG 1 cut(s) 602
Kzo9I GATC 4 cut(s) 163, 211, 724, 892
LmnI GCTCC 2 cut(s) 619, 840
Lsp1109I GCAGC 2 cut(s) 63, 422
MaeI CTAG 3 cut(s) 575, 644, 650
MaeII ACGT 4 cut(s) 484, 504, 680, 856
MaeIII GTNAC 1 cut(s) 515
MalI GATC 4 cut(s) 165, 213, 726, 894
MbiI CCGCTC 1 cut(s) 622
MboI GATC 4 cut(s) 163, 211, 724, 892
MboII GAAGA 8 cut(s) 296, 357, 512, 691, 721, 766, 887, 915
MhlI GDGCHC 4 cut(s) 28, 90, 845, 940
MluCI AATT 1 cut(s) 954
MlyI GAGTC 5 cut(s) 235, 430, 564, 605, 636
MmeI TCCRAC 2 cut(s) 503, 779
MnlI CCTC 8 cut(s) 4, 107, 110, 149, 482, 530, 648, 678
MroI TCCGGA 1 cut(s) 566
MroXI GAANNNNTTC 1 cut(s) 504
MseI TTAA 1 cut(s) 738
MspA1I CMGCKG 2 cut(s) 413, 601
MspI CCGG 5 cut(s) 431, 534, 567, 583, 704
MspR9I CCNGG 7 cut(s) 249, 324, 426, 534, 583, 584, 704
Mva1269I GAATGC 1 cut(s) 79
MvaI CCWGG 3 cut(s) 249, 324, 426
MvnI CGCG 2 cut(s) 601, 734
MwoI GCNNNNNNNGC 4 cut(s) 85, 130, 166, 944
NciI CCSGG 4 cut(s) 534, 583, 584, 704
NdeII GATC 4 cut(s) 163, 211, 724, 892
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 4 cut(s) 253, 588, 790, 842
NmuCI GTSAC 1 cut(s) 515
NspV TTCGAA 1 cut(s) 750
PasI CCCWGGG 1 cut(s) 323
PcsI WCGNNNNNNNCGW 4 cut(s) 52, 159, 476, 490
PctI GAATGC 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 2 cut(s) 57, 595
Pfl23II CGTACG 1 cut(s) 818
PflFI GACNNNGTC 1 cut(s) 439
PflMI CCANNNNNTGG 1 cut(s) 798
PkrI GCNGC 4 cut(s) 78, 412, 603, 624
Ple19I CGATCG 1 cut(s) 166
PleI GAGTC 5 cut(s) 235, 430, 564, 605, 635
PmaCI CACGTG 1 cut(s) 485
PmlI CACGTG 1 cut(s) 485
PpsI GAGTC 5 cut(s) 235, 430, 564, 605, 635
Ppu21I YACGTR 1 cut(s) 485
Psp1406I AACGTT 1 cut(s) 680
Psp6I CCWGG 3 cut(s) 247, 322, 424
PspCI CACGTG 1 cut(s) 485
PspGI CCWGG 3 cut(s) 247, 322, 424
PspLI CGTACG 1 cut(s) 818
PspN4I GGNNCC 4 cut(s) 253, 588, 790, 842
PspPI GGNCC 4 cut(s) 252, 428, 789, 876
PsyI GACNNNGTC 1 cut(s) 439
PvuI CGATCG 1 cut(s) 166
RsaI GTAC 2 cut(s) 588, 820
RsaNI GTAC 2 cut(s) 587, 819
SacII CCGCGG 1 cut(s) 602
SalI GTCGAC 1 cut(s) 492
SaqAI TTAA 1 cut(s) 738
SatI GCNGC 4 cut(s) 77, 411, 602, 623
Sau3AI GATC 4 cut(s) 163, 211, 724, 892
Sau96I GGNCC 4 cut(s) 252, 428, 789, 876
SchI GAGTC 5 cut(s) 235, 430, 564, 605, 636
ScrFI CCNGG 7 cut(s) 249, 324, 426, 534, 583, 584, 704
SduI GDGCHC 4 cut(s) 28, 90, 845, 940
Sfr303I CCGCGG 1 cut(s) 602
SfuI TTCGAA 1 cut(s) 750
SgrBI CCGCGG 1 cut(s) 602
SinI GGWCC 3 cut(s) 252, 428, 789
SmaI CCCGGG 1 cut(s) 584
Sse9I AATT 1 cut(s) 954
SsiI CCGC 6 cut(s) 8, 413, 422, 599, 601, 622
SspMI CTAG 3 cut(s) 575, 644, 650
StyD4I CCNGG 7 cut(s) 247, 322, 424, 532, 581, 582, 702
TaaI ACNGT 3 cut(s) 266, 331, 695
TaiI ACGT 4 cut(s) 487, 507, 683, 859
TaqI TCGA 8 cut(s) 55, 235, 258, 493, 522, 630, 750, 891
TaqII GACCGA 1 cut(s) 123
TasI AATT 1 cut(s) 954
TauI GCSGC 2 cut(s) 604, 625
TfiI GAWTC 2 cut(s) 57, 595
Tru1I TTAA 1 cut(s) 738
Tru9I TTAA 1 cut(s) 738
TscAI CASTG 3 cut(s) 90, 205, 621
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 2 cut(s) 76, 410
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 2 cut(s) 442, 930
TspGWI ACGGA 2 cut(s) 244, 429
TspMI CCCGGG 1 cut(s) 582
TspRI CASTG 3 cut(s) 90, 205, 621
Tth111I GACNNNGTC 1 cut(s) 439
Van91I CCANNNNNTGG 1 cut(s) 798
VneI GTGCAC 1 cut(s) 24
VpaK11BI GGWCC 3 cut(s) 252, 428, 789
XcmI CCANNNNNNNNNTGG 1 cut(s) 895
XmaI CCCGGG 1 cut(s) 582
XmiI GTMKAC 1 cut(s) 493
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 3 cut(s) 575, 644, 650
ZraI GACGTC 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.