Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011408.1

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Forward (+)

3319 .. 4248

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011408.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgctgaggcttcacggcttcttcccgaccttctctcccgacgccgatctcgtcgcctttaatcccgatttcgaaggaaacaccggcgtcaaaatcgtcaagtccgacgggtcaaaatgttggactttaatcaaaggcacaaagtacacggtccagatcgcgcgaatcgagtttgacccgtctgatctgaacggtgataaggaggacgtcccatgcaacgttaagatcatcactcgcgaagacacagggaataacgccttcgcttcctgctccccagacggcaagtcgctcgtgttccggtccggtcggacccgccacaagaacctctacattgtcgacgccgttaacgacgagtttaacggcggaatctgtcggttgacggaggggccgtgtattgataccatgccgagctggtcgcccagaggagacctcatcgccttctcttcgaaccggcaaaaaccggacgataatgctgtgttcagcatttatgtcatcaacccggacggctcggggttacggagaatccacgtggcgggagatgacgtggacagggagaggatcaaccacgtgtgctttagtagcgacggggagtggctgctgttcacggctaacttggatggcgtgacggctgagccggtgtcatttccgaaccagtttcagtcgtacggggatttgcacgtggtgagattggacgggagtgggctgaggaggctgacgtggaatgggtacgagaatggcacgccgacgtggcacacgggtgatgagctggacctggggcggctgcgtttgggtccttccgaagctggagataaactcaagggtcaatttgacgaacctcattggaatatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPPIV_N PD40

Protein Analysis

283

Amino Acids

31.43

Weight (kDa)

5.09

Isoelectric Point (pI)

27.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	336
AccII	CGCG	3 cut(s)	161, 163, 237
AciI	CCGC	4 cut(s)	313, 363, 533, 778
AclI	AACGTT	1 cut(s)	219
AclWI	GGATC	1 cut(s)	566
AcvI	CACGTG	3 cut(s)	529, 568, 679
AcyI	GRCGYC	4 cut(s)	42, 87, 207, 339
AdeI	CACNNNGTG	1 cut(s)	682
AfaI	GTAC	3 cut(s)	146, 665, 728
AfiI	CCNNNNNNNGG	1 cut(s)	532
AflIII	ACRYGT	1 cut(s)	567
AhdI	GACNNNNNGTC	1 cut(s)	283
AjiI	CACGTC	3 cut(s)	544, 717, 747
AjnI	CCWGG	1 cut(s)	771
AleI	CACNNNNGTG	1 cut(s)	756
AluBI	AGCT	3 cut(s)	411, 766, 803
AluI	AGCT	3 cut(s)	411, 766, 803
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	508
AoxI	GGCC	1 cut(s)	386
ApeKI	GCWGC	2 cut(s)	595, 781
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	6 cut(s)	151, 300, 309, 386, 769, 791
AsuC2I	CCSGG	1 cut(s)	500
AsuHPI	GGTGA	3 cut(s)	206, 694, 770
AsuII	TTCGAA	2 cut(s)	72, 446
AvaI	CYCGRG	1 cut(s)	508
AvaII	GGWCC	5 cut(s)	151, 300, 309, 769, 791
BauI	CACGAG	1 cut(s)	290
BbrPI	CACGTG	3 cut(s)	529, 568, 679
BbsI	GAAGAC	1 cut(s)	246
BbvCI	CCTCAGC	2 cut(s)	5, 704
BbvI	GCAGC	2 cut(s)	582, 768
BccI	CCATC	1 cut(s)	611
BceAI	ACGGC	8 cut(s)	31, 295, 326, 373, 376, 520, 621, 642
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	773
BcnI	CCSGG	1 cut(s)	500
BcoDI	GTCTC	1 cut(s)	420
BglI	GCCNNNNNGGC	1 cut(s)	748
BisI	GCNGC	3 cut(s)	596, 779, 782
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	3 cut(s)	597, 780, 783
Bme1390I	CCNGG	2 cut(s)	500, 773
Bme18I	GGWCC	5 cut(s)	151, 300, 309, 769, 791
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	508
BmgBI	CACGTC	3 cut(s)	544, 717, 747
BmgT120I	GGNCC	6 cut(s)	151, 300, 309, 386, 769, 791
BmiI	GGNNCC	3 cut(s)	311, 387, 792
BmrFI	CCNGG	2 cut(s)	500, 773
BpiI	GAAGAC	1 cut(s)	246
BplI	GAGNNNNNCTC	4 cut(s)	414, 446, 798, 830
BpmI	CTGGAG	1 cut(s)	825
Bpu10I	CCTNAGC	2 cut(s)	5, 704
Bpu1102I	GCTNAGC	1 cut(s)	630
Bpu14I	TTCGAA	2 cut(s)	72, 446
BpuEI	CTTGAG	1 cut(s)	800
BpuMI	CCSGG	1 cut(s)	500
BsaAI	YACGTR	3 cut(s)	529, 568, 679
BsaHI	GRCGYC	4 cut(s)	42, 87, 207, 339
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	772
BsaWI	WCCGGW	3 cut(s)	297, 302, 460
BsaXI	ACNNNNNCTCC	6 cut(s)	19, 49, 374, 404, 528, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	532
Bse118I	RCCGGY	3 cut(s)	83, 450, 634
Bse1I	ACTGG	1 cut(s)	652
BseBI	CCWGG	1 cut(s)	773
BseDI	CCNNGG	1 cut(s)	772
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	1 cut(s)	532
BseMII	CTCAG	2 cut(s)	621, 695
BseNI	ACTGG	1 cut(s)	652
BseRI	GAGGAG	2 cut(s)	438, 721
BseXI	GCAGC	2 cut(s)	582, 768
Bsh1236I	CGCG	3 cut(s)	161, 163, 237
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	1 cut(s)	388
BsiEI	CGRYCG	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	7 cut(s)	84, 298, 303, 451, 461, 500, 635
BsiWI	CGTACG	1 cut(s)	663
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	532
BsmAI	GTCTC	1 cut(s)	420
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	388
Bso31I	GGTCTC	1 cut(s)	420
BsoBI	CYCGRG	1 cut(s)	508
Bsp119I	TTCGAA	2 cut(s)	72, 446
Bsp143I	GATC	5 cut(s)	46, 156, 184, 225, 558
Bsp1720I	GCTNAGC	1 cut(s)	630
Bsp68I	TCGCGA	1 cut(s)	237
BspACI	CCGC	4 cut(s)	313, 363, 533, 778
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	2 cut(s)	622, 696
BspFNI	CGCG	3 cut(s)	161, 163, 237
BspLI	GGNNCC	3 cut(s)	311, 387, 792
BspPI	GGATC	1 cut(s)	566
BspT104I	TTCGAA	2 cut(s)	72, 446
BspTNI	GGTCTC	1 cut(s)	420
BsrFI	RCCGGY	3 cut(s)	83, 450, 634
BsrI	ACTGG	1 cut(s)	652
BssAI	RCCGGY	3 cut(s)	83, 450, 634
BssECI	CCNNGG	1 cut(s)	772
BssMI	GATC	5 cut(s)	46, 156, 184, 225, 558
BssNI	GRCGYC	4 cut(s)	42, 87, 207, 339
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	773
Bst4CI	ACNGT	2 cut(s)	151, 194
Bst6I	CTCTTC	1 cut(s)	448
BstACI	GRCGYC	4 cut(s)	42, 87, 207, 339
BstBAI	YACGTR	3 cut(s)	529, 568, 679
BstBI	TTCGAA	2 cut(s)	72, 446
BstC8I	GCNNGC	1 cut(s)	740
BstDEI	CTNAG	3 cut(s)	5, 630, 704
BstF5I	GGATG	1 cut(s)	622
BstFNI	CGCG	3 cut(s)	161, 163, 237
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	5 cut(s)	49, 159, 187, 228, 561
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	5 cut(s)	46, 156, 184, 225, 558
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	3 cut(s)	579, 709, 748
BstNI	CCWGG	1 cut(s)	773
BstSCI	CCNGG	2 cut(s)	498, 771
BstUI	CGCG	3 cut(s)	161, 163, 237
BstV1I	GCAGC	2 cut(s)	582, 768
BstV2I	GAAGAC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	388
BtgZI	GCGATG	1 cut(s)	418
BtrI	CACGTC	3 cut(s)	544, 717, 747
BtsCI	GGATG	1 cut(s)	622
BtuMI	TCGCGA	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	740
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	3 cut(s)	83, 450, 634
Cfr13I	GGNCC	6 cut(s)	151, 300, 309, 386, 769, 791
CpoI	CGGWCCG	1 cut(s)	300
CseI	GACGC	3 cut(s)	50, 76, 347
Csp6I	GTAC	3 cut(s)	145, 664, 727
CspI	CGGWCCG	1 cut(s)	300
CviAII	CATG	2 cut(s)	213, 403
CviQI	GTAC	3 cut(s)	145, 664, 727
DdeI	CTNAG	3 cut(s)	5, 630, 704
DpnI	GATC	5 cut(s)	48, 158, 186, 227, 560
DpnII	GATC	5 cut(s)	46, 156, 184, 225, 558
DraIII	CACNNNGTG	1 cut(s)	682
DriI	GACNNNNNGTC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	448
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	448
EciI	GGCGGA	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	420
Eco47I	GGWCC	5 cut(s)	151, 300, 309, 769, 791
Eco72I	CACGTG	3 cut(s)	529, 568, 679
Eco88I	CYCGRG	1 cut(s)	508
EcoO109I	RGGNCCY	1 cut(s)	791
EcoRII	CCWGG	1 cut(s)	771
FaeI	CATG	2 cut(s)	216, 406
FaiI	YATR	3 cut(s)	214, 404, 489
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	2 cut(s)	212, 402
FauI	CCCGC	2 cut(s)	320, 526
FblI	GTMKAC	1 cut(s)	336
Fnu4HI	GCNGC	3 cut(s)	596, 779, 782
FokI	GGATG	1 cut(s)	629
Fsp4HI	GCNGC	3 cut(s)	596, 779, 782
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	3 cut(s)	596, 779, 782
GsuI	CTGGAG	1 cut(s)	825
HaeIII	GGCC	1 cut(s)	388
HapII	CCGG	7 cut(s)	84, 298, 303, 451, 461, 500, 635
HgaI	GACGC	3 cut(s)	50, 76, 347
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	4 cut(s)	42, 87, 207, 339
Hin1II	CATG	2 cut(s)	216, 406
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	3 cut(s)	337, 346, 378
HindII	GTYRAC	3 cut(s)	337, 346, 378
HinfI	GANTC	3 cut(s)	165, 366, 522
HpaI	GTTAAC	1 cut(s)	346
HpaII	CCGG	7 cut(s)	84, 298, 303, 451, 461, 500, 635
HphI	GGTGA	3 cut(s)	206, 694, 770
Hpy166II	GTNNAC	6 cut(s)	147, 337, 346, 378, 547, 603
Hpy188I	TCNGA	6 cut(s)	106, 184, 189, 309, 648, 799
Hpy188III	TCNNGA	5 cut(s)	25, 38, 65, 154, 236
Hpy8I	GTNNAC	6 cut(s)	147, 337, 346, 378, 547, 603
Hpy99I	CGWCG	7 cut(s)	44, 56, 110, 341, 353, 587, 748
HpyAV	CCTTC	5 cut(s)	40, 68, 268, 448, 804
HpyCH4III	ACNGT	2 cut(s)	151, 194
HpyCH4IV	ACGT	8 cut(s)	207, 219, 528, 543, 567, 678, 716, 746
HpyCH4V	TGCA	2 cut(s)	216, 676
HpyF10VI	GCNNNNNNNGC	3 cut(s)	579, 709, 748
HpyF3I	CTNAG	3 cut(s)	5, 630, 704
HpySE526I	ACGT	8 cut(s)	207, 219, 528, 543, 567, 678, 716, 746
Hsp92I	GRCGYC	4 cut(s)	42, 87, 207, 339
Hsp92II	CATG	2 cut(s)	216, 406
HspAI	GCGC	1 cut(s)	161
KspAI	GTTAAC	1 cut(s)	346
Kzo9I	GATC	5 cut(s)	46, 156, 184, 225, 558
LmnI	GCTCC	1 cut(s)	275
Lsp1109I	GCAGC	2 cut(s)	582, 768
MaeII	ACGT	8 cut(s)	207, 219, 528, 543, 567, 678, 716, 746
MaeIII	GTNAC	2 cut(s)	513, 622
MalI	GATC	5 cut(s)	48, 158, 186, 227, 560
MboI	GATC	5 cut(s)	46, 156, 184, 225, 558
MboII	GAAGA	3 cut(s)	13, 251, 435
MluCI	AATT	1 cut(s)	824
MmeI	TCCRAC	3 cut(s)	101, 129, 287
MnlI	CCTC	9 cut(s)	196, 335, 376, 416, 440, 549, 699, 702, 846
MseI	TTAA	5 cut(s)	60, 128, 222, 345, 357
MslI	CAYNNNNRTG	1 cut(s)	756
MspI	CCGG	7 cut(s)	84, 298, 303, 451, 461, 500, 635
MspR9I	CCNGG	2 cut(s)	500, 773
MvaI	CCWGG	1 cut(s)	773
MvnI	CGCG	3 cut(s)	161, 163, 237
MwoI	GCNNNNNNNGC	3 cut(s)	579, 709, 748
NciI	CCSGG	1 cut(s)	500
NdeII	GATC	5 cut(s)	46, 156, 184, 225, 558
NlaIII	CATG	2 cut(s)	216, 406
NlaIV	GGNNCC	3 cut(s)	311, 387, 792
NmeAIII	GCCGAG	1 cut(s)	432
NmuCI	GTSAC	1 cut(s)	622
NruI	TCGCGA	1 cut(s)	237
NspV	TTCGAA	2 cut(s)	72, 446
OliI	CACNNNNGTG	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	5 cut(s)	48, 102, 165, 345, 386
PfeI	GAWTC	3 cut(s)	165, 366, 522
Pfl23II	CGTACG	1 cut(s)	663
PkrI	GCNGC	3 cut(s)	597, 780, 783
PmaCI	CACGTG	3 cut(s)	529, 568, 679
PmlI	CACGTG	3 cut(s)	529, 568, 679
Ppu21I	YACGTR	3 cut(s)	529, 568, 679
PpuMI	RGGWCCY	1 cut(s)	791
Psp1406I	AACGTT	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	791
Psp6I	CCWGG	1 cut(s)	771
PspCI	CACGTG	3 cut(s)	529, 568, 679
PspGI	CCWGG	1 cut(s)	771
PspLI	CGTACG	1 cut(s)	663
PspN4I	GGNNCC	3 cut(s)	311, 387, 792
PspPI	GGNCC	6 cut(s)	151, 300, 309, 386, 769, 791
PspPPI	RGGWCCY	1 cut(s)	791
RruI	TCGCGA	1 cut(s)	237
RsaI	GTAC	3 cut(s)	146, 665, 728
RsaNI	GTAC	3 cut(s)	145, 664, 727
RseI	CAYNNNNRTG	1 cut(s)	756
Rsr2I	CGGWCCG	1 cut(s)	300
RsrII	CGGWCCG	1 cut(s)	300
SalI	GTCGAC	1 cut(s)	335
SaqAI	TTAA	5 cut(s)	60, 128, 222, 345, 357
SatI	GCNGC	3 cut(s)	596, 779, 782
Sau3AI	GATC	5 cut(s)	46, 156, 184, 225, 558
Sau96I	GGNCC	6 cut(s)	151, 300, 309, 386, 769, 791
ScrFI	CCNGG	2 cut(s)	500, 773
SfuI	TTCGAA	2 cut(s)	72, 446
SgrAI	CRCCGGYG	1 cut(s)	83
SinI	GGWCC	5 cut(s)	151, 300, 309, 769, 791
SmiMI	CAYNNNNRTG	1 cut(s)	756
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	1 cut(s)	824
SsiI	CCGC	4 cut(s)	313, 363, 533, 778
SspI	AATATT	1 cut(s)	847
StyD4I	CCNGG	2 cut(s)	498, 771
TaaI	ACNGT	2 cut(s)	151, 194
TaiI	ACGT	8 cut(s)	210, 222, 531, 546, 570, 681, 719, 749
TaqI	TCGA	4 cut(s)	72, 168, 336, 446
TasI	AATT	1 cut(s)	824
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	781
TfiI	GAWTC	3 cut(s)	165, 366, 522
Tru1I	TTAA	5 cut(s)	60, 128, 222, 345, 357
Tru9I	TTAA	5 cut(s)	60, 128, 222, 345, 357
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	2 cut(s)	595, 781
Tsp45I	GTSAC	1 cut(s)	622
TspGWI	ACGGA	2 cut(s)	395, 532
VpaK11BI	GGWCC	5 cut(s)	151, 300, 309, 769, 791
XmiI	GTMKAC	1 cut(s)	336
ZraI	GACGTC	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.