Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001260.1

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Forward (+)

108599 .. 112796

Gene Structure 4198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001260.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgaaagttccgatcgtctatagtgaacttcacggctcaaaatcgagctcctctagccgaatcactacaaaacaccaccacagatgtgacaaggaggaagaggcaagcttgccggtgcccggattccgtcgtggatcggccggagaaggaagaaatcagaggaggaagaatcagaccgaagaggagaaaaggatcggggaagaagagagagaaaacttggtggatctagtttgctggaagccaaggctcagcattgatggtgaagaagagcggaacgagacgcaggtcgaggagtttctgctgaactttgttgatcgttggtcgacgtctgatggaggaatggcagggttggcatgggtttgggcttgggtcgttgggcctgagctcaaacatggaatgagaggtgcttgggcttctgggcctaaatttgagcgtgcttgggcttctgggcctaaatttgagctcaaatttaggctggttgagtctactgcaacggacaagaagggcaagatcaacctgttgccgaggttgttggctcctgaagaggttgaggagggtgttggctccaaccctaagggggaggagctagtattttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.5

Weight (kDa)

6.04

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	329
Acc36I	ACCTGC	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	115
AccBSI	CCGCTC	1 cut(s)	271
AccI	GTMKAC	2 cut(s)	323, 485
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	3 cut(s)	142, 200, 231
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	3 cut(s)	425, 455, 467
AcuI	CTGAAG	1 cut(s)	561
AcyI	GRCGYC	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	119, 577
AleI	CACNNNNGTG	1 cut(s)	84
AluBI	AGCT	5 cut(s)	48, 108, 385, 463, 586
AluI	AGCT	5 cut(s)	48, 108, 385, 463, 586
Alw21I	GWGCWC	3 cut(s)	50, 387, 465
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	3 cut(s)	142, 200, 231
AoxI	GGCC	4 cut(s)	138, 377, 419, 449
ApoI	RAATTY	3 cut(s)	425, 455, 467
AspS9I	GGNCC	3 cut(s)	377, 419, 449
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	272
AxyI	CCTNAGG	1 cut(s)	573
BaeGI	GKGCMC	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	115
BanII	GRGCYC	3 cut(s)	50, 387, 465
Bbv12I	GWGCWC	3 cut(s)	50, 387, 465
BccI	CCATC	2 cut(s)	251, 326
BceAI	ACGGC	1 cut(s)	49
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	3 cut(s)	54, 227, 587
BfmI	CTRYAG	1 cut(s)	19
BfuAI	ACCTGC	1 cut(s)	274
BlpI	GCTNAGC	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	120
BmgT120I	GGNCC	3 cut(s)	377, 419, 449
BmiI	GGNNCC	3 cut(s)	117, 537, 565
BmrFI	CCNGG	1 cut(s)	120
BoxI	GACNNNNGTC	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	381
Bpu1102I	GCTNAGC	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	242, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 577
Bse118I	RCCGGY	1 cut(s)	112
Bse21I	CCTNAGG	1 cut(s)	573
BseDI	CCNNGG	2 cut(s)	242, 524
BseLI	CCNNNNNNNGG	2 cut(s)	119, 577
BseMII	CTCAG	2 cut(s)	262, 372
BseRI	GAGGAG	6 cut(s)	40, 175, 197, 305, 566, 596
BseSI	GKGCMC	1 cut(s)	120
BseX3I	CGGCCG	1 cut(s)	138
Bsh1285I	CGRYCG	2 cut(s)	15, 141
BshFI	GGCC	4 cut(s)	140, 379, 421, 451
BshNI	GGYRCC	1 cut(s)	115
BsiEI	CGRYCG	2 cut(s)	15, 141
BsiHKAI	GWGCWC	3 cut(s)	50, 387, 465
BsiSI	CCGG	3 cut(s)	113, 120, 141
BslI	CCNNNNNNNGG	2 cut(s)	119, 577
BsmAI	GTCTC	1 cut(s)	272
BsmBI	CGTCTC	1 cut(s)	272
BsnI	GGCC	4 cut(s)	140, 379, 421, 451
Bsp1286I	GDGCHC	4 cut(s)	50, 120, 387, 465
Bsp143I	GATC	6 cut(s)	12, 134, 192, 223, 313, 510
Bsp1720I	GCTNAGC	1 cut(s)	248
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	4 cut(s)	140, 379, 421, 451
BspCNI	CTCAG	2 cut(s)	261, 373
BspLI	GGNNCC	3 cut(s)	117, 537, 565
BspMI	ACCTGC	1 cut(s)	274
BspPI	GGATC	3 cut(s)	142, 200, 231
BspQI	GCTCTTC	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	115
BsrBI	CCGCTC	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	242, 524
BssMI	GATC	6 cut(s)	12, 134, 192, 223, 313, 510
BssNI	GRCGYC	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	242
Bst6I	CTCTTC	5 cut(s)	93, 174, 198, 261, 537
BstACI	GRCGYC	1 cut(s)	326
BstC8I	GCNNGC	3 cut(s)	106, 110, 435
BstDEI	CTNAG	4 cut(s)	248, 381, 573, 597
BstKTI	GATC	6 cut(s)	15, 137, 195, 226, 316, 513
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	6 cut(s)	12, 134, 192, 223, 313, 510
BstMCI	CGRYCG	2 cut(s)	15, 141
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 350
BstPAI	GACNNNNGTC	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	19
BstSLI	GKGCMC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BstZI	CGGCCG	1 cut(s)	138
Bsu36I	CCTNAGG	1 cut(s)	573
BsuRI	GGCC	4 cut(s)	140, 379, 421, 451
BveI	ACCTGC	1 cut(s)	274
Cac8I	GCNNGC	3 cut(s)	106, 110, 435
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	3 cut(s)	377, 419, 449
CseI	GACGC	1 cut(s)	289
CviAII	CATG	2 cut(s)	354, 392
DdeI	CTNAG	4 cut(s)	248, 381, 573, 597
DpnI	GATC	6 cut(s)	14, 136, 194, 225, 315, 512
DpnII	GATC	6 cut(s)	12, 134, 192, 223, 313, 510
EaeI	YGGCCR	1 cut(s)	138
EagI	CGGCCG	1 cut(s)	138
Eam1104I	CTCTTC	5 cut(s)	93, 174, 198, 261, 537
EarI	CTCTTC	5 cut(s)	93, 174, 198, 261, 537
Ecl136II	GAGCTC	3 cut(s)	48, 385, 463
EclXI	CGGCCG	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	242
Eco24I	GRGCYC	3 cut(s)	50, 387, 465
Eco52I	CGGCCG	1 cut(s)	138
Eco53kI	GAGCTC	3 cut(s)	48, 385, 463
Eco57I	CTGAAG	1 cut(s)	561
Eco81I	CCTNAGG	1 cut(s)	573
EcoICRI	GAGCTC	3 cut(s)	48, 385, 463
EcoT14I	CCWWGG	1 cut(s)	242
EcoT38I	GRGCYC	3 cut(s)	50, 387, 465
ErhI	CCWWGG	1 cut(s)	242
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	2 cut(s)	357, 395
FaiI	YATR	3 cut(s)	21, 355, 393
FatI	CATG	2 cut(s)	353, 391
FblI	GTMKAC	2 cut(s)	323, 485
FriOI	GRGCYC	3 cut(s)	50, 387, 465
FspBI	CTAG	3 cut(s)	54, 227, 587
HaeIII	GGCC	4 cut(s)	140, 379, 421, 451
HapII	CCGG	3 cut(s)	113, 120, 141
HgaI	GACGC	1 cut(s)	289
Hin1I	GRCGYC	1 cut(s)	326
Hin1II	CATG	2 cut(s)	357, 395
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	4 cut(s)	60, 123, 169, 482
HpaII	CCGG	3 cut(s)	113, 120, 141
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	3 cut(s)	26, 324, 486
Hpy188I	TCNGA	4 cut(s)	12, 159, 174, 331
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	3 cut(s)	26, 324, 486
Hpy99I	CGWCG	2 cut(s)	132, 328
HpyAV	CCTTC	2 cut(s)	140, 496
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	1 cut(s)	491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 350
HpyF3I	CTNAG	4 cut(s)	248, 381, 573, 597
HpySE526I	ACGT	1 cut(s)	326
Hsp92I	GRCGYC	1 cut(s)	326
Hsp92II	CATG	2 cut(s)	357, 395
Kzo9I	GATC	6 cut(s)	12, 134, 192, 223, 313, 510
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	4 cut(s)	53, 541, 569, 583
MaeI	CTAG	3 cut(s)	54, 227, 587
MaeII	ACGT	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	6 cut(s)	14, 136, 194, 225, 315, 512
MbiI	CCGCTC	1 cut(s)	271
MboI	GATC	6 cut(s)	12, 134, 192, 223, 313, 510
MboII	GAAGA	9 cut(s)	110, 162, 178, 191, 212, 215, 275, 278, 554
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	4 cut(s)	50, 120, 387, 465
MluCI	AATT	3 cut(s)	425, 455, 467
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	1 cut(s)	591
MslI	CAYNNNNRTG	1 cut(s)	84
MspI	CCGG	3 cut(s)	113, 120, 141
MspR9I	CCNGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	54, 350
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	6 cut(s)	12, 134, 192, 223, 313, 510
NlaIII	CATG	2 cut(s)	357, 395
NlaIV	GGNNCC	3 cut(s)	117, 537, 565
NmeAIII	GCCGAG	1 cut(s)	549
NmuCI	GTSAC	1 cut(s)	86
OliI	CACNNNNGTG	1 cut(s)	84
PciSI	GCTCTTC	1 cut(s)	261
PfeI	GAWTC	3 cut(s)	60, 123, 169
Ple19I	CGATCG	1 cut(s)	15
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PshAI	GACNNNNGTC	1 cut(s)	284
Psp124BI	GAGCTC	3 cut(s)	50, 387, 465
PspN4I	GGNNCC	3 cut(s)	117, 537, 565
PspPI	GGNCC	3 cut(s)	377, 419, 449
PsuI	RGATCY	1 cut(s)	223
PvuI	CGATCG	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	84
SacI	GAGCTC	3 cut(s)	50, 387, 465
SalI	GTCGAC	1 cut(s)	322
SapI	GCTCTTC	1 cut(s)	261
Sau3AI	GATC	6 cut(s)	12, 134, 192, 223, 313, 510
Sau96I	GGNCC	3 cut(s)	377, 419, 449
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	4 cut(s)	50, 120, 387, 465
SfcI	CTRYAG	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	84
Sse9I	AATT	3 cut(s)	425, 455, 467
SsiI	CCGC	1 cut(s)	271
SspMI	CTAG	3 cut(s)	54, 227, 587
SstI	GAGCTC	3 cut(s)	50, 387, 465
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	242
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	3 cut(s)	44, 288, 323
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	3 cut(s)	425, 455, 467
TfiI	GAWTC	3 cut(s)	60, 123, 169
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	116, 509
XapI	RAATTY	3 cut(s)	425, 455, 467
XmiI	GTMKAC	2 cut(s)	323, 485
XspI	CTAG	3 cut(s)	54, 227, 587
ZraI	GACGTC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.