RchiOBHm_Chr3g0485261

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002386
Physical Location & Seq
Forward (+)
31891934 .. 31892584
651 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44988

Sequence Viewer

Length: 303 bp
ATGATGTTCGGGTGGAACGGTAGGCCACCGGAGGGCCTGGCAACGACAAAGACAATCCGGCATCAGAGAGTTAGGCTGCCCTCTATTCATGTGTGGGCTTGGGTTGTTGGGCCTGGGCTAAACTTTGGAATGAGGGGTGCTTGGGCCTTTGGGCCTAGATTTGAGCTCAATCTTGGGTTGGTTGAGTCTGCTGCAGTGGACAAGAAGAGCAATACCAACCTATTGCCGAGGTTGTTGGCTCCTGAAGAGACTGAGGACGGTGTTGGCTCTAACCCTAAGGGGAAGGAGCTAGCATTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.98

Weight (kDa)

9.81

Isoelectric Point (pI)

20.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 32
AjnI CCWGG 2 cut(s) 36, 112
AluBI AGCT 2 cut(s) 166, 289
AluI AGCT 2 cut(s) 166, 289
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 242
AoxI GGCC 5 cut(s) 23, 34, 110, 144, 152
ApeKI GCWGC 2 cut(s) 76, 191
AspS9I GGNCC 4 cut(s) 34, 110, 144, 152
AsuNHI GCTAGC 1 cut(s) 289
AxyI CCTNAGG 1 cut(s) 276
BanII GRGCYC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 63, 178
BciT130I CCWGG 2 cut(s) 38, 114
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 2 cut(s) 156, 290
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 2 cut(s) 77, 192
BlsI GCNGC 2 cut(s) 78, 193
Bme1390I CCNGG 2 cut(s) 38, 114
BmgT120I GGNCC 4 cut(s) 34, 110, 144, 152
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 2 cut(s) 38, 114
BmsI GCATC 1 cut(s) 70
BmtI GCTAGC 1 cut(s) 293
BsaJI CCNNGG 2 cut(s) 113, 227
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse21I CCTNAGG 1 cut(s) 276
BseBI CCWGG 2 cut(s) 38, 114
BseDI CCNNGG 2 cut(s) 113, 227
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 243
BseXI GCAGC 2 cut(s) 63, 178
BshFI GGCC 5 cut(s) 25, 36, 112, 146, 154
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 2 cut(s) 29, 58
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 5 cut(s) 25, 36, 112, 146, 154
Bsp1286I GDGCHC 1 cut(s) 168
BspANI GGCC 5 cut(s) 25, 36, 112, 146, 154
BspCNI CTCAG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 240
BspMAI CTGCAG 1 cut(s) 196
BspOI GCTAGC 1 cut(s) 293
BspQI GCTCTTC 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 113, 227
Bst2UI CCWGG 2 cut(s) 38, 114
Bst4CI ACNGT 2 cut(s) 20, 260
Bst6I CTCTTC 2 cut(s) 200, 240
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 252, 276
BstMAI GTCTC 1 cut(s) 242
BstNI CCWGG 2 cut(s) 38, 114
BstSCI CCNGG 2 cut(s) 36, 112
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 2 cut(s) 63, 178
Bsu36I CCTNAGG 1 cut(s) 276
BsuRI GGCC 5 cut(s) 25, 36, 112, 146, 154
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 291
Cfr13I GGNCC 4 cut(s) 34, 110, 144, 152
CviAII CATG 1 cut(s) 89
DdeI CTNAG 2 cut(s) 252, 276
Eam1104I CTCTTC 2 cut(s) 200, 240
EarI CTCTTC 2 cut(s) 200, 240
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 264
Eco81I CCTNAGG 1 cut(s) 276
EcoICRI GAGCTC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 36, 112
EcoT38I GRGCYC 1 cut(s) 168
FaeI CATG 1 cut(s) 92
FaiI YATR 1 cut(s) 90
FatI CATG 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 77, 192
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 2 cut(s) 77, 192
FspBI CTAG 2 cut(s) 156, 290
GluI GCNGC 2 cut(s) 77, 192
HaeIII GGCC 5 cut(s) 25, 36, 112, 146, 154
HapII CCGG 2 cut(s) 29, 58
Hin1II CATG 1 cut(s) 92
HinfI GANTC 1 cut(s) 185
HpaII CCGG 2 cut(s) 29, 58
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 2 cut(s) 20, 260
HpyCH4V TGCA 1 cut(s) 194
HpyF3I CTNAG 2 cut(s) 252, 276
Hsp92II CATG 1 cut(s) 92
LguI GCTCTTC 1 cut(s) 200
LmnI GCTCC 2 cut(s) 244, 286
LpnPI CCDG 7 cut(s) 23, 42, 50, 71, 99, 126, 255
Lsp1109I GCAGC 2 cut(s) 63, 178
LweI GCATC 1 cut(s) 70
MaeI CTAG 2 cut(s) 156, 290
MboII GAAGA 2 cut(s) 217, 257
MhlI GDGCHC 1 cut(s) 168
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 5 cut(s) 25, 91, 126, 222, 247
MseI TTAA 1 cut(s) 301
MspI CCGG 2 cut(s) 29, 58
MspR9I CCNGG 2 cut(s) 38, 114
MvaI CCWGG 2 cut(s) 38, 114
NheI GCTAGC 1 cut(s) 289
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 240
NmeAIII GCCGAG 1 cut(s) 252
PciSI GCTCTTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 78, 193
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 2 cut(s) 36, 112
PspGI CCWGG 2 cut(s) 36, 112
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 4 cut(s) 34, 110, 144, 152
PstI CTGCAG 1 cut(s) 196
SacI GAGCTC 1 cut(s) 168
SapI GCTCTTC 1 cut(s) 200
SaqAI TTAA 1 cut(s) 301
SatI GCNGC 2 cut(s) 77, 192
Sau96I GGNCC 4 cut(s) 34, 110, 144, 152
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 38, 114
SduI GDGCHC 1 cut(s) 168
SetI ASST 4 cut(s) 168, 222, 233, 291
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 192
SspMI CTAG 2 cut(s) 156, 290
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 2 cut(s) 36, 112
TaaI ACNGT 2 cut(s) 20, 260
Tru1I TTAA 1 cut(s) 301
Tru9I TTAA 1 cut(s) 301
TscAI CASTG 1 cut(s) 201
TseI GCWGC 2 cut(s) 76, 191
TspDTI ATGAA 1 cut(s) 77
TspRI CASTG 1 cut(s) 201
XspI CTAG 2 cut(s) 156, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.