Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011943.1

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Reverse (-)

583 .. 1433

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011943.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ctgctgcattcagtgcccggaagcctcctccatgatcgacccatcatcaaggacggcaagctctacctcatctcagctcacgaacagcccgatcggcttttcaagagctggtctgctctctactccactgagcttgatgatcagaacgaaaagaaaaccacccgattaactccacccgggtccgtcgattacagtccggccgtttctctctcggcgagttcgtcgccgtcgcttcttacggctctcgtccctgggacggcgagtttcaccagctcaatactgacatcgtcgtcttccaagcttcacaacccggaaagcgtgtggtggtctgtgagcgcggcggtcccccgcatccccgttgactccctccgagtcactccatcgggtctccactgcttcactccggccgccatgcacagacggaaaaagaataatcgtcgccactctccgccgcaacacgaagttccgacacgtggaggtcttcgacgtcgacacgaagacgttccatccggtcacctcgacgctgaacccaaatttccaccatttcaacccgttcgtttctccagactcctagttcctcgggtaccaccgattccgccgcaagtcgactcagtggggcggcgagtcgatattcctcacttggagccggtgtcgtctcccgtcagacatctccaaatgttgaggcttcacggcttcttctcgaccttctctcttgacgccgatctcttcgcgtttaatcccgatttcgaaggaaaccccggcatcaaaatcgtcaagtcatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPPIV_N PD40

Protein Analysis

261

Amino Acids

28.95

Weight (kDa)

9.82

Isoelectric Point (pI)

60.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	289
AatII	GACGTC	1 cut(s)	490
Acc65I	GGTACC	1 cut(s)	583
AccB1I	GGYRCC	1 cut(s)	583
AccI	GTMKAC	2 cut(s)	490, 606
AccII	CGCG	2 cut(s)	338, 731
AciI	CCGC	9 cut(s)	338, 341, 349, 408, 449, 452, 596, 599, 619
AcoI	YGGCCR	2 cut(s)	198, 405
AcsI	RAATTY	1 cut(s)	533
AcvI	CACGTG	1 cut(s)	473
AcyI	GRCGYC	2 cut(s)	487, 717
AfaI	GTAC	1 cut(s)	585
AfiI	CCNNNNNNNGG	2 cut(s)	256, 473
AflIII	ACRYGT	1 cut(s)	470
AgsI	TTSAA	2 cut(s)	103, 548
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	6 cut(s)	61, 77, 108, 133, 273, 301
AluI	AGCT	6 cut(s)	61, 77, 108, 133, 273, 301
Alw26I	GTCTC	2 cut(s)	392, 660
Ama87I	CYCGRG	2 cut(s)	176, 579
AoxI	GGCC	2 cut(s)	198, 405
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	533
Asp700I	GAANNNNTTC	1 cut(s)	501
Asp718I	GGTACC	1 cut(s)	583
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	180, 343
AsuC2I	CCSGG	5 cut(s)	18, 177, 178, 311, 759
AsuHPI	GGTGA	2 cut(s)	259, 506
AsuII	TTCGAA	1 cut(s)	747
AvaI	CYCGRG	2 cut(s)	176, 579
AvaII	GGWCC	2 cut(s)	180, 343
BaeGI	GKGCMC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	583
BbrPI	CACGTG	1 cut(s)	473
BbsI	GAAGAC	3 cut(s)	285, 473, 504
BccI	CCATC	3 cut(s)	50, 388, 514
BceAI	ACGGC	6 cut(s)	70, 185, 211, 255, 273, 706
BcgI	CGANNNNNNTGC	2 cut(s)	751, 785
BciT130I	CCWGG	1 cut(s)	252
BclI	TGATCA	1 cut(s)	139
BcnI	CCSGG	5 cut(s)	18, 177, 178, 311, 759
BcoDI	GTCTC	2 cut(s)	392, 660
BfaI	CTAG	2 cut(s)	572, 784
BglI	GCCNNNNNGGC	1 cut(s)	94
BisI	GCNGC	6 cut(s)	5, 339, 408, 452, 599, 620
BlsI	GCNGC	6 cut(s)	6, 340, 409, 453, 600, 621
Bme1390I	CCNGG	6 cut(s)	18, 177, 178, 252, 311, 759
Bme18I	GGWCC	2 cut(s)	180, 343
BmeT110I	CYCGRG	2 cut(s)	176, 579
BmgT120I	GGNCC	2 cut(s)	180, 343
BmiI	GGNNCC	4 cut(s)	181, 345, 585, 645
BmrFI	CCNGG	6 cut(s)	18, 177, 178, 252, 311, 759
BmsI	GCATC	2 cut(s)	360, 771
BpiI	GAAGAC	3 cut(s)	285, 473, 504
BpmI	CTGGAG	1 cut(s)	547
Bpu14I	TTCGAA	1 cut(s)	747
BpuMI	CCSGG	5 cut(s)	18, 177, 178, 311, 759
BsaAI	YACGTR	1 cut(s)	473
BsaHI	GRCGYC	2 cut(s)	487, 717
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	5 cut(s)	176, 250, 251, 578, 757
BsaWI	WCCGGW	1 cut(s)	509
BsaXI	ACNNNNNCTCC	2 cut(s)	635, 665
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 473
Bse118I	RCCGGY	1 cut(s)	646
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	5 cut(s)	176, 250, 251, 578, 757
BseGI	GGATG	2 cut(s)	351, 506
BseLI	CCNNNNNNNGG	2 cut(s)	256, 473
BseMII	CTCAG	3 cut(s)	87, 120, 624
BseRI	GAGGAG	1 cut(s)	17
BseSI	GKGCMC	1 cut(s)	18
BseX3I	CGGCCG	2 cut(s)	198, 405
Bsh1236I	CGCG	2 cut(s)	338, 731
Bsh1285I	CGRYCG	3 cut(s)	94, 201, 408
BshFI	GGCC	2 cut(s)	200, 407
BshNI	GGYRCC	1 cut(s)	583
BsiEI	CGRYCG	3 cut(s)	94, 201, 408
BsiHKCI	CYCGRG	2 cut(s)	176, 579
BsiSI	CCGG	8 cut(s)	18, 177, 197, 311, 404, 510, 647, 759
BslFI	GGGAC	3 cut(s)	233, 268, 329
BslI	CCNNNNNNNGG	2 cut(s)	256, 473
BsmAI	GTCTC	2 cut(s)	392, 660
BsmBI	CGTCTC	1 cut(s)	660
BsmFI	GGGAC	3 cut(s)	233, 268, 329
BsmI	GAATGC	1 cut(s)	7
BsnI	GGCC	2 cut(s)	200, 407
Bso31I	GGTCTC	1 cut(s)	392
BsoBI	CYCGRG	2 cut(s)	176, 579
Bsp119I	TTCGAA	1 cut(s)	747
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	4 cut(s)	34, 91, 139, 721
BspACI	CCGC	9 cut(s)	338, 341, 349, 408, 449, 452, 596, 599, 619
BspANI	GGCC	2 cut(s)	200, 407
BspCNI	CTCAG	3 cut(s)	86, 121, 623
BspFNI	CGCG	2 cut(s)	338, 731
BspLI	GGNNCC	4 cut(s)	181, 345, 585, 645
BspT104I	TTCGAA	1 cut(s)	747
BspT107I	GGYRCC	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	392
BsrFI	RCCGGY	1 cut(s)	646
BssAI	RCCGGY	1 cut(s)	646
BssECI	CCNNGG	5 cut(s)	176, 250, 251, 578, 757
BssMI	GATC	4 cut(s)	34, 91, 139, 721
BssNI	GRCGYC	2 cut(s)	487, 717
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	731
BstACI	GRCGYC	2 cut(s)	487, 717
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstBAI	YACGTR	1 cut(s)	473
BstBI	TTCGAA	1 cut(s)	747
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	3 cut(s)	73, 129, 610
BstEII	GGTNACC	1 cut(s)	512
BstF5I	GGATG	2 cut(s)	351, 506
BstFNI	CGCG	2 cut(s)	338, 731
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	4 cut(s)	37, 94, 142, 724
BstMAI	GTCTC	2 cut(s)	392, 660
BstMBI	GATC	4 cut(s)	34, 91, 139, 721
BstMCI	CGRYCG	3 cut(s)	94, 201, 408
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 94
BstNI	CCWGG	1 cut(s)	252
BstPI	GGTNACC	1 cut(s)	512
BstSCI	CCNGG	6 cut(s)	16, 175, 176, 250, 309, 757
BstSLI	GKGCMC	1 cut(s)	18
BstUI	CGCG	2 cut(s)	338, 731
BstV2I	GAAGAC	3 cut(s)	285, 473, 504
BstZI	CGGCCG	2 cut(s)	198, 405
BsuRI	GGCC	2 cut(s)	200, 407
BtsCI	GGATG	2 cut(s)	351, 506
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	4 cut(s)	18, 126, 391, 618
Cac8I	GCNNGC	1 cut(s)	59
CfoI	GCGC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	646
Cfr13I	GGNCC	2 cut(s)	180, 343
Cfr9I	CCCGGG	1 cut(s)	176
CseI	GACGC	2 cut(s)	530, 725
Csp6I	GTAC	1 cut(s)	584
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	2 cut(s)	32, 412
CviQI	GTAC	1 cut(s)	584
DdeI	CTNAG	3 cut(s)	73, 129, 610
DpnI	GATC	4 cut(s)	36, 93, 141, 723
DpnII	GATC	4 cut(s)	34, 91, 139, 721
DrdI	GACNNNNNNGTC	1 cut(s)	289
DseDI	GACNNNNNNGTC	1 cut(s)	289
EaeI	YGGCCR	2 cut(s)	198, 405
EagI	CGGCCG	2 cut(s)	198, 405
Eam1104I	CTCTTC	1 cut(s)	731
EarI	CTCTTC	1 cut(s)	731
EciI	GGCGGA	2 cut(s)	438, 585
EclXI	CGGCCG	2 cut(s)	198, 405
Eco31I	GGTCTC	1 cut(s)	392
Eco47I	GGWCC	2 cut(s)	180, 343
Eco52I	CGGCCG	2 cut(s)	198, 405
Eco72I	CACGTG	1 cut(s)	473
Eco88I	CYCGRG	2 cut(s)	176, 579
Eco91I	GGTNACC	1 cut(s)	512
EcoO65I	GGTNACC	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	660
FaeI	CATG	2 cut(s)	35, 415
FaiI	YATR	3 cut(s)	33, 413, 781
FaqI	GGGAC	3 cut(s)	233, 268, 329
FatI	CATG	2 cut(s)	31, 411
FauI	CCCGC	1 cut(s)	356
FbaI	TGATCA	1 cut(s)	139
FblI	GTMKAC	2 cut(s)	490, 606
Fnu4HI	GCNGC	6 cut(s)	5, 339, 408, 452, 599, 620
FokI	GGATG	2 cut(s)	338, 493
Fsp4HI	GCNGC	6 cut(s)	5, 339, 408, 452, 599, 620
FspBI	CTAG	2 cut(s)	572, 784
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	6 cut(s)	5, 339, 408, 452, 599, 620
GsuI	CTGGAG	1 cut(s)	547
HaeIII	GGCC	2 cut(s)	200, 407
HapII	CCGG	8 cut(s)	18, 177, 197, 311, 404, 510, 647, 759
HgaI	GACGC	2 cut(s)	530, 725
HhaI	GCGC	1 cut(s)	338
Hin1I	GRCGYC	2 cut(s)	487, 717
Hin1II	CATG	2 cut(s)	35, 415
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HincII	GTYRAC	3 cut(s)	361, 491, 607
HindII	GTYRAC	3 cut(s)	361, 491, 607
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	6 cut(s)	362, 372, 567, 592, 608, 624
HpaII	CCGG	8 cut(s)	18, 177, 197, 311, 404, 510, 647, 759
HphI	GGTGA	2 cut(s)	259, 506
Hpy166II	GTNNAC	3 cut(s)	361, 491, 607
Hpy188I	TCNGA	4 cut(s)	144, 371, 468, 665
Hpy188III	TCNNGA	6 cut(s)	80, 103, 564, 700, 713, 740
Hpy8I	GTNNAC	3 cut(s)	361, 491, 607
Hpy99I	CGWCG	8 cut(s)	188, 226, 232, 292, 441, 489, 492, 524
HpyAV	CCTTC	2 cut(s)	715, 743
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	3 cut(s)	472, 487, 501
HpyCH4V	TGCA	2 cut(s)	7, 415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 94
HpyF3I	CTNAG	3 cut(s)	73, 129, 610
HpySE526I	ACGT	3 cut(s)	472, 487, 501
Hsp92I	GRCGYC	2 cut(s)	487, 717
Hsp92II	CATG	2 cut(s)	35, 415
HspAI	GCGC	1 cut(s)	336
KpnI	GGTACC	1 cut(s)	587
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	34, 91, 139, 721
LmnI	GCTCC	1 cut(s)	643
LweI	GCATC	2 cut(s)	360, 771
MaeI	CTAG	2 cut(s)	572, 784
MaeII	ACGT	3 cut(s)	472, 487, 501
MaeIII	GTNAC	2 cut(s)	373, 512
MalI	GATC	4 cut(s)	36, 93, 141, 723
MboI	GATC	4 cut(s)	34, 91, 139, 721
MboII	GAAGA	5 cut(s)	285, 473, 509, 688, 718
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	1 cut(s)	533
MlyI	GAGTC	5 cut(s)	356, 381, 561, 602, 633
MmeI	TCCRAC	1 cut(s)	491
MnlI	CCTC	9 cut(s)	35, 38, 77, 377, 470, 527, 588, 645, 675
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	2 cut(s)	167, 735
MspI	CCGG	8 cut(s)	18, 177, 197, 311, 404, 510, 647, 759
MspR9I	CCNGG	6 cut(s)	18, 177, 178, 252, 311, 759
Mva1269I	GAATGC	1 cut(s)	7
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	2 cut(s)	338, 731
MwoI	GCNNNNNNNGC	2 cut(s)	13, 94
NciI	CCSGG	5 cut(s)	18, 177, 178, 311, 759
NdeII	GATC	4 cut(s)	34, 91, 139, 721
NlaIII	CATG	2 cut(s)	35, 415
NlaIV	GGNNCC	4 cut(s)	181, 345, 585, 645
NmeAIII	GCCGAG	1 cut(s)	191
NmuCI	GTSAC	2 cut(s)	373, 512
NspV	TTCGAA	1 cut(s)	747
PasI	CCCWGGG	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 218
PctI	GAATGC	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	592
PflFI	GACNNNGTC	1 cut(s)	286
PkrI	GCNGC	6 cut(s)	6, 340, 409, 453, 600, 621
Ple19I	CGATCG	1 cut(s)	94
PleI	GAGTC	5 cut(s)	356, 380, 561, 602, 632
PmaCI	CACGTG	1 cut(s)	473
PmlI	CACGTG	1 cut(s)	473
PpsI	GAGTC	5 cut(s)	356, 380, 561, 602, 632
Ppu21I	YACGTR	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	250
PspCI	CACGTG	1 cut(s)	473
PspEI	GGTNACC	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	4 cut(s)	181, 345, 585, 645
PspPI	GGNCC	2 cut(s)	180, 343
PsyI	GACNNNGTC	1 cut(s)	286
PvuI	CGATCG	1 cut(s)	94
RsaI	GTAC	1 cut(s)	585
RsaNI	GTAC	1 cut(s)	584
SalI	GTCGAC	2 cut(s)	489, 605
SaqAI	TTAA	2 cut(s)	167, 735
SatI	GCNGC	6 cut(s)	5, 339, 408, 452, 599, 620
Sau3AI	GATC	4 cut(s)	34, 91, 139, 721
Sau96I	GGNCC	2 cut(s)	180, 343
SchI	GAGTC	5 cut(s)	356, 381, 561, 602, 633
ScrFI	CCNGG	6 cut(s)	18, 177, 178, 252, 311, 759
SduI	GDGCHC	1 cut(s)	18
SfaNI	GCATC	2 cut(s)	360, 771
SfuI	TTCGAA	1 cut(s)	747
SinI	GGWCC	2 cut(s)	180, 343
SmaI	CCCGGG	1 cut(s)	178
Sse9I	AATT	1 cut(s)	533
SsiI	CCGC	9 cut(s)	338, 341, 349, 408, 449, 452, 596, 599, 619
SspMI	CTAG	2 cut(s)	572, 784
StyD4I	CCNGG	6 cut(s)	16, 175, 176, 250, 309, 757
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	3 cut(s)	475, 490, 504
TaqI	TCGA	9 cut(s)	37, 186, 484, 490, 519, 606, 627, 701, 747
TasI	AATT	1 cut(s)	533
TauI	GCSGC	5 cut(s)	341, 410, 454, 601, 622
TfiI	GAWTC	1 cut(s)	592
Tru1I	TTAA	2 cut(s)	167, 735
Tru9I	TTAA	2 cut(s)	167, 735
TscAI	CASTG	4 cut(s)	18, 133, 398, 618
TseFI	GTSAC	2 cut(s)	373, 512
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	2 cut(s)	373, 512
TspGWI	ACGGA	2 cut(s)	172, 436
TspMI	CCCGGG	1 cut(s)	176
TspRI	CASTG	4 cut(s)	18, 133, 398, 618
Tth111I	GACNNNGTC	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	180, 343
XapI	RAATTY	1 cut(s)	533
XmaI	CCCGGG	1 cut(s)	176
XmiI	GTMKAC	2 cut(s)	490, 606
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	2 cut(s)	572, 784
ZraI	GACGTC	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.