Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Reverse (-)

54720443 .. 54722660

Gene Structure 2218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00373530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGACTTCAAGAATTTCTTTTGGTAAAGATTTTCCTCGGCATCCCAATGATGCGCCGCCGCCGCCGCCGCGCAGCCCCCCCCAAACGCCCCTCCCCTCCTCCGCCGGACGACTACGACGACGACGACAAGTGCGCCAAGAAGCACAAGCTCCTCCTCGGAATCAACCACCAACAGCACAATCGCCGTTCAATTTCGGCCCCTACGGCTCCAATTCCAATGCCGACGACAACCATCCGGACAAGATCGGATCCAATCATATGGTGATCATCGACCTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

10.3

Weight (kDa)

10.71

Isoelectric Point (pI)

81.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	70
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	6 cut(s)	56, 59, 62, 65, 68, 102
AclWI	GGATC	2 cut(s)	243, 256
AcsI	RAATTY	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	9, 190
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
AlwI	GGATC	2 cut(s)	243, 256
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	1 cut(s)	196
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	12
AspLEI	GCGC	3 cut(s)	55, 72, 135
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	274
BamHI	GGATCC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	1 cut(s)	240
BceAI	ACGGC	2 cut(s)	169, 220
BclI	TGATCA	1 cut(s)	264
BglI	GCCNNNNNGGC	1 cut(s)	204
BisI	GCNGC	6 cut(s)	56, 59, 62, 65, 68, 73
BlsI	GCNGC	6 cut(s)	57, 60, 63, 66, 69, 74
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	3 cut(s)	199, 208, 250
BmsI	GCATC	2 cut(s)	40, 49
BsaJI	CCNNGG	2 cut(s)	35, 155
BsaWI	WCCGGW	1 cut(s)	235
BseAI	TCCGGA	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	35, 155
BseGI	GGATG	2 cut(s)	40, 232
BseRI	GAGGAG	3 cut(s)	88, 141, 144
BseXI	GCAGC	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	105, 236
BsnI	GGCC	1 cut(s)	198
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	3 cut(s)	243, 248, 264
BspACI	CCGC	6 cut(s)	56, 59, 62, 65, 68, 102
BspANI	GGCC	1 cut(s)	198
BspEI	TCCGGA	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	3 cut(s)	199, 208, 250
BspPI	GGATC	2 cut(s)	243, 256
BssECI	CCNNGG	2 cut(s)	35, 155
BssMI	GATC	3 cut(s)	243, 248, 264
BstF5I	GGATG	2 cut(s)	40, 232
BstFNI	CGCG	1 cut(s)	70
BstHHI	GCGC	3 cut(s)	55, 72, 135
BstKTI	GATC	3 cut(s)	246, 251, 267
BstMBI	GATC	3 cut(s)	243, 248, 264
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 64, 67, 204
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	248
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	40, 232
CfoI	GCGC	3 cut(s)	55, 72, 135
Cfr13I	GGNCC	1 cut(s)	197
CviJI	RGCY	4 cut(s)	75, 149, 198, 207
CviKI_1	RGCY	4 cut(s)	75, 149, 198, 207
DpnI	GATC	3 cut(s)	245, 250, 266
DpnII	GATC	3 cut(s)	243, 248, 264
EciI	GGCGGA	1 cut(s)	91
FaiI	YATR	2 cut(s)	258, 260
FalI	AAGNNNNNCTT	1 cut(s)	33
FauNDI	CATATG	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	6 cut(s)	56, 59, 62, 65, 68, 73
FokI	GGATG	2 cut(s)	27, 219
Fsp4HI	GCNGC	6 cut(s)	56, 59, 62, 65, 68, 73
GlaI	GCGC	3 cut(s)	54, 71, 134
GluI	GCNGC	6 cut(s)	56, 59, 62, 65, 68, 73
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	2 cut(s)	105, 236
HhaI	GCGC	3 cut(s)	55, 72, 135
Hin6I	GCGC	3 cut(s)	53, 70, 133
HinP1I	GCGC	3 cut(s)	53, 70, 133
HinfI	GANTC	1 cut(s)	160
HpaII	CCGG	2 cut(s)	105, 236
HphI	GGTGA	1 cut(s)	274
Hpy188I	TCNGA	2 cut(s)	159, 248
Hpy188III	TCNNGA	2 cut(s)	9, 236
Hpy99I	CGWCG	4 cut(s)	120, 123, 126, 227
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 64, 67, 204
HspAI	GCGC	3 cut(s)	53, 70, 133
Kpn2I	TCCGGA	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	3 cut(s)	243, 248, 264
LmnI	GCTCC	2 cut(s)	154, 212
LpnPI	CCDG	2 cut(s)	118, 249
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	2 cut(s)	40, 49
MalI	GATC	3 cut(s)	245, 250, 266
MboI	GATC	3 cut(s)	243, 248, 264
MflI	RGATCY	1 cut(s)	248
MluCI	AATT	3 cut(s)	12, 190, 211
MnlI	CCTC	6 cut(s)	45, 101, 106, 109, 162, 165
MroI	TCCGGA	1 cut(s)	235
MslI	CAYNNNNRTG	1 cut(s)	45
MspI	CCGG	2 cut(s)	105, 236
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	4 cut(s)	61, 64, 67, 204
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	3 cut(s)	243, 248, 264
NlaIV	GGNNCC	3 cut(s)	199, 208, 250
NmeAIII	GCCGAG	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	2 cut(s)	115, 121
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	6 cut(s)	57, 60, 63, 66, 69, 74
PspN4I	GGNNCC	3 cut(s)	199, 208, 250
PspPI	GGNCC	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	45
SatI	GCNGC	6 cut(s)	56, 59, 62, 65, 68, 73
Sau3AI	GATC	3 cut(s)	243, 248, 264
Sau96I	GGNCC	1 cut(s)	197
SetI	ASST	2 cut(s)	151, 276
SfaNI	GCATC	2 cut(s)	40, 49
SmiMI	CAYNNNNRTG	1 cut(s)	45
Sse9I	AATT	3 cut(s)	12, 190, 211
SsiI	CCGC	6 cut(s)	56, 59, 62, 65, 68, 102
TaqI	TCGA	2 cut(s)	270, 276
TasI	AATT	3 cut(s)	12, 190, 211
TauI	GCSGC	5 cut(s)	58, 61, 64, 67, 70
TfiI	GAWTC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	72
XapI	RAATTY	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.