Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Forward (+)

13554206 .. 13554700

Gene Structure 495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAGCTCTTTGATGTCGAATCCAAGACGTTTGAACCGATGACAGAGATCCTGAACCCGAATTGCCACCATTACAGCCCGTTTGTTTCGTCCGATTCAGAGTTCCTTGGGTATCACCGATTCTGGGGTGATTCGACTAAGTGGGGCGAGTTCGATTCCACAATTCCTTATATCGAGCGAGTGTCTTCGCCTATTGAACAACTCCAGATGCTGAGGATTCAGGGTTCTTTCCCAACCTTCTCTCCGAGCGGTGATTTGATCGCGTATAATCAGGATTTGGATGGGAATAGCGGAATCAATGTTATCAAATCGGACGGCTCAAACCACTGGAGTTTGATCAAGGGCCGGGCAACCTTCTACAATGCTTGGAGCCCAACCAAGAAGTCGTGGAGGGGTGGACCCATGATGGGGATGGAGGGATGTCGGGTGGGGAAGACGAAGGGTTCTGGGCTTTATATATATATATATATATATATAATACTTTTATTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPPIV_N PD40

Protein Analysis

165

Amino Acids

18.69

Weight (kDa)

6.41

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	249
AccII	CGCG	1 cut(s)	263
AciI	CCGC	2 cut(s)	249, 291
AclWI	GGATC	1 cut(s)	43
AfiI	CCNNNNNNNGG	3 cut(s)	124, 407, 408
AgsI	TTSAA	2 cut(s)	35, 197
AloI	GAACNNNNNNTCC	2 cut(s)	208, 240
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
AlwI	GGATC	1 cut(s)	43
AlwNI	CAGNNNCTG	1 cut(s)	211
AoxI	GGCC	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	343, 398
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	3 cut(s)	107, 140, 263
AvaII	GGWCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	374
BbsI	GAAGAC	2 cut(s)	177, 440
BbvCI	CCTCAGC	1 cut(s)	212
BccI	CCATC	3 cut(s)	275, 400, 406
BceAI	ACGGC	1 cut(s)	331
BclI	TGATCA	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	2 cut(s)	343, 398
BmiI	GGNNCC	2 cut(s)	371, 400
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	1 cut(s)	198
BpiI	GAAGAC	2 cut(s)	177, 440
BpmI	CTGGAG	2 cut(s)	188, 349
Bpu10I	CCTNAGC	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 407, 408
Bse1I	ACTGG	1 cut(s)	332
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	3 cut(s)	286, 417, 425
BseLI	CCNNNNNNNGG	3 cut(s)	124, 407, 408
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	346
BslI	CCNNNNNNNGG	3 cut(s)	124, 407, 408
BsnI	GGCC	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	374
Bsp143I	GATC	3 cut(s)	48, 258, 336
BspACI	CCGC	2 cut(s)	249, 291
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	2 cut(s)	371, 400
BspPI	GGATC	1 cut(s)	43
BsrBI	CCGCTC	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	3 cut(s)	48, 258, 336
BssT1I	CCWWGG	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	138, 212
BstF5I	GGATG	3 cut(s)	286, 417, 425
BstFNI	CGCG	1 cut(s)	263
BstKTI	GATC	3 cut(s)	51, 261, 339
BstMBI	GATC	3 cut(s)	48, 258, 336
BstSCI	CCNGG	1 cut(s)	345
BstUI	CGCG	1 cut(s)	263
BstV2I	GAAGAC	2 cut(s)	177, 440
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	345
BtsCI	GGATG	3 cut(s)	286, 417, 425
BtsIMutI	CAGTG	1 cut(s)	325
CaiI	CAGNNNCTG	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	343, 398
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	6 cut(s)	7, 78, 318, 345, 372, 451
CviKI_1	RGCY	6 cut(s)	7, 78, 318, 345, 372, 451
DdeI	CTNAG	2 cut(s)	138, 212
DpnI	GATC	3 cut(s)	50, 260, 338
DpnII	GATC	3 cut(s)	48, 258, 336
Eco130I	CCWWGG	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	1 cut(s)	406
FatI	CATG	1 cut(s)	402
FbaI	TGATCA	1 cut(s)	336
FokI	GGATG	3 cut(s)	293, 424, 432
FriOI	GRGCYC	1 cut(s)	374
GsuI	CTGGAG	2 cut(s)	188, 349
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	1 cut(s)	346
Hin1II	CATG	1 cut(s)	406
HinfI	GANTC	7 cut(s)	20, 95, 120, 131, 155, 217, 294
HpaII	CCGG	1 cut(s)	346
HphI	GGTGA	3 cut(s)	107, 140, 263
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	4 cut(s)	94, 100, 246, 313
Hpy188III	TCNNGA	3 cut(s)	52, 205, 272
Hpy8I	GTNNAC	1 cut(s)	398
HpyAV	CCTTC	3 cut(s)	247, 364, 433
HpyCH4IV	ACGT	1 cut(s)	29
HpyF3I	CTNAG	2 cut(s)	138, 212
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	3 cut(s)	48, 258, 336
LmnI	GCTCC	1 cut(s)	369
LpnPI	CCDG	8 cut(s)	65, 109, 206, 218, 257, 313, 359, 432
LweI	GCATC	1 cut(s)	198
MaeII	ACGT	1 cut(s)	29
MalI	GATC	3 cut(s)	50, 260, 338
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	3 cut(s)	48, 258, 336
MboII	GAAGA	2 cut(s)	177, 445
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	374
MluCI	AATT	3 cut(s)	61, 162, 490
MnlI	CCTC	3 cut(s)	207, 384, 409
MseI	TTAA	2 cut(s)	489, 493
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	263
NciI	CCSGG	1 cut(s)	347
NdeII	GATC	3 cut(s)	48, 258, 336
NlaIII	CATG	1 cut(s)	406
NlaIV	GGNNCC	2 cut(s)	371, 400
PacI	TTAATTAA	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	35
PfeI	GAWTC	7 cut(s)	20, 95, 120, 131, 155, 217, 294
PspN4I	GGNNCC	2 cut(s)	371, 400
PspPI	GGNCC	2 cut(s)	343, 398
PstNI	CAGNNNCTG	1 cut(s)	211
PsuI	RGATCY	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	489, 493
Sau3AI	GATC	3 cut(s)	48, 258, 336
Sau96I	GGNCC	2 cut(s)	343, 398
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	374
SetI	ASST	4 cut(s)	9, 32, 239, 356
SfaNI	GCATC	1 cut(s)	198
SinI	GGWCC	1 cut(s)	398
Sse9I	AATT	3 cut(s)	61, 162, 490
SsiI	CCGC	2 cut(s)	249, 291
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	1 cut(s)	106
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	4 cut(s)	18, 134, 153, 174
TasI	AATT	3 cut(s)	61, 162, 490
TfiI	GAWTC	7 cut(s)	20, 95, 120, 131, 155, 217, 294
Tru1I	TTAA	2 cut(s)	489, 493
Tru9I	TTAA	2 cut(s)	489, 493
TscAI	CASTG	1 cut(s)	332
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.