Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040736.1

Orthogroup ID

OG0002386

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 589

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040736.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggagcccaagggcactctcatcttctccaccgttggccgaccccactacggcttcgacctattctccctccgcctcagctcctcccatctccccctcgaacaccgcctcaccgacggcaaatccatcaacttcaacgcccaattcgcccacgacgaccaccaccaatccatcgtcttcatctccgagcgaaccgggtcgcccgccatttacttaacccgacccggaatccccgacccccaactgctgcattccgttcccgggagcctcttccacgaccgacccatcatcaagaacggcaagctctacttcatctcagctcacgaacagcccgaccggcttttcaagagctggtctgctctctactccactgagcttgatggtgagaaccaaaagaagaccacccggttgactccgcccgggtctgtcgattacagtccggccgtttctctctccggcgagttcgtcgccgtcgcttcgtacggctctcgtccctgggacggcgagtttcaccagctcaacaccgacatcgtcgtcttccgagcctcacagcccggaaagcgtgtactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPPIV_N PD40

Protein Analysis

190

Amino Acids

21.24

Weight (kDa)

7.18

Isoelectric Point (pI)

27.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01870 AT4G01870
fragaria_vesca	FvH4_1g26490
malus_domestica	MD17G1281200.v1.1
prunus_persica	Prupe.3G004400_v2.0.a1
pyrus_communis	pycom09g02860 pycom10g10260 pycom17g27890
rosa_chinensis	RchiOBHm_Chr2g0147951 RchiOBHm_Chr3g0485261 RchiOBHm_Chr3g0486551 RchiOBHm_Chr6g0276991 RchiOBHm_Chr6g0277001
rosa_laevigata	RLG00000023077 RLG00000024900 RLG00000033827
rosa_multiflora	Rmu_sc0000308.1_g000067 Rmu_sc0001260.1_g000030 Rmu_sc0003040.1_g000011 Rmu_sc0003801.1_g000028 Rmu_sc0003801.1_g000029 Rmu_sc0008973.1_g000015 Rmu_sc0011408.1_g000002 Rmu_sc0011408.1_g000004 Rmu_sc0011943.1_g000001 Rmu_sc0032328.1_g000001 Rmu_sc0040736.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138000 Rroxscaffold_4G00302670 Rroxscaffold_5G00344080 Rroxscaffold_5G00373530 Rroxscaffold_6G00395800
rosa_rugosa	Rorug03G0225100
rosa_samantha	Rh3AG275100 Rh3BG310200 Rh3CG309400 Rh3DG306200 Rh4BG238600 Rh6BG152100 Rh6CG318000 Rh6DG302900
rosa_wichuraiana	Rw3G024520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	533
AciI	CCGC	4 cut(s)	73, 106, 204, 416
AcoI	YGGCCR	2 cut(s)	37, 441
AfaI	GTAC	2 cut(s)	482, 567
AfiI	CCNNNNNNNGG	3 cut(s)	50, 261, 500
AgsI	TTSAA	2 cut(s)	136, 346
AjnI	CCWGG	1 cut(s)	494
AluBI	AGCT	6 cut(s)	81, 304, 320, 351, 376, 517
AluI	AGCT	6 cut(s)	81, 304, 320, 351, 376, 517
Ama87I	CYCGRG	2 cut(s)	260, 419
AoxI	GGCC	2 cut(s)	37, 441
ApeKI	GCWGC	1 cut(s)	247
AsuC2I	CCSGG	8 cut(s)	196, 225, 261, 262, 406, 420, 421, 555
AsuHPI	GGTGA	3 cut(s)	103, 395, 503
AvaI	CYCGRG	2 cut(s)	260, 419
BaeGI	GKGCMC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	3 cut(s)	169, 404, 529
BbvCI	CCTCAGC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	5 cut(s)	96, 134, 179, 293, 374
BceAI	ACGGC	7 cut(s)	67, 133, 313, 428, 455, 499, 517
BciT130I	CCWGG	1 cut(s)	496
BcnI	CCSGG	8 cut(s)	196, 225, 261, 262, 406, 420, 421, 555
BglI	GCCNNNNNGGC	1 cut(s)	337
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
Bme1390I	CCNGG	9 cut(s)	196, 225, 261, 262, 406, 420, 421, 496, 555
BmeT110I	CYCGRG	2 cut(s)	260, 419
BmiI	GGNNCC	2 cut(s)	6, 266
BmrFI	CCNGG	9 cut(s)	196, 225, 261, 262, 406, 420, 421, 496, 555
BpiI	GAAGAC	3 cut(s)	169, 404, 529
Bpu10I	CCTNAGC	1 cut(s)	77
BpuMI	CCSGG	8 cut(s)	196, 225, 261, 262, 406, 420, 421, 555
BsaJI	CCNNGG	5 cut(s)	9, 260, 419, 494, 495
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 261, 500
Bse118I	RCCGGY	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	496
BseDI	CCNNGG	5 cut(s)	9, 260, 419, 494, 495
BseLI	CCNNNNNNNGG	3 cut(s)	50, 261, 500
BseMII	CTCAG	3 cut(s)	91, 330, 363
BseRI	GAGGAG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	17
BseX3I	CGGCCG	1 cut(s)	441
BseXI	GCAGC	1 cut(s)	234
Bsh1285I	CGRYCG	3 cut(s)	280, 337, 444
BshFI	GGCC	2 cut(s)	39, 443
BsiEI	CGRYCG	3 cut(s)	280, 337, 444
BsiHKCI	CYCGRG	2 cut(s)	260, 419
BsiSI	CCGG	9 cut(s)	195, 225, 261, 337, 406, 420, 440, 456, 555
BsiWI	CGTACG	1 cut(s)	480
BslFI	GGGAC	2 cut(s)	477, 512
BslI	CCNNNNNNNGG	3 cut(s)	50, 261, 500
BsmFI	GGGAC	2 cut(s)	477, 512
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	39, 443
BsoBI	CYCGRG	2 cut(s)	260, 419
Bsp1286I	GDGCHC	2 cut(s)	9, 17
BspACI	CCGC	4 cut(s)	73, 106, 204, 416
BspANI	GGCC	2 cut(s)	39, 443
BspCNI	CTCAG	3 cut(s)	90, 329, 364
BspLI	GGNNCC	2 cut(s)	6, 266
BsrFI	RCCGGY	1 cut(s)	336
BssAI	RCCGGY	1 cut(s)	336
BssECI	CCNNGG	5 cut(s)	9, 260, 419, 494, 495
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	496
Bst4CI	ACNGT	2 cut(s)	34, 437
Bst6I	CTCTTC	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	204, 302
BstDEI	CTNAG	3 cut(s)	77, 316, 372
BstMCI	CGRYCG	3 cut(s)	280, 337, 444
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 337, 559
BstNI	CCWGG	1 cut(s)	496
BstSCI	CCNGG	9 cut(s)	194, 223, 259, 260, 404, 418, 419, 494, 553
BstSLI	GKGCMC	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	234
BstV2I	GAAGAC	3 cut(s)	169, 404, 529
BstZI	CGGCCG	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	39, 443
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	204, 302
Cfr10I	RCCGGY	1 cut(s)	336
Cfr9I	CCCGGG	2 cut(s)	260, 419
Csp6I	GTAC	2 cut(s)	481, 566
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviQI	GTAC	2 cut(s)	481, 566
DdeI	CTNAG	3 cut(s)	77, 316, 372
DrdI	GACNNNNNNGTC	1 cut(s)	533
DseDI	GACNNNNNNGTC	1 cut(s)	533
EaeI	YGGCCR	2 cut(s)	37, 441
EagI	CGGCCG	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
EciI	GGCGGA	2 cut(s)	62, 405
EclXI	CGGCCG	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	9
Eco52I	CGGCCG	1 cut(s)	441
Eco88I	CYCGRG	2 cut(s)	260, 419
EcoRII	CCWGG	1 cut(s)	494
EcoT14I	CCWWGG	1 cut(s)	9
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	2 cut(s)	477, 512
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	248
GluI	GCNGC	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	39, 443
HapII	CCGG	9 cut(s)	195, 225, 261, 337, 406, 420, 440, 456, 555
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	2 cut(s)	228, 412
HpaII	CCGG	9 cut(s)	195, 225, 261, 337, 406, 420, 440, 456, 555
HphI	GGTGA	3 cut(s)	103, 395, 503
Hpy166II	GTNNAC	2 cut(s)	411, 566
Hpy188I	TCNGA	2 cut(s)	187, 542
Hpy188III	TCNNGA	3 cut(s)	292, 323, 346
Hpy8I	GTNNAC	2 cut(s)	411, 566
Hpy99I	CGWCG	5 cut(s)	119, 158, 470, 476, 536
HpyCH4III	ACNGT	2 cut(s)	34, 437
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 337, 559
HpyF3I	CTNAG	3 cut(s)	77, 316, 372
LmnI	GCTCC	3 cut(s)	4, 86, 264
Lsp1109I	GCAGC	1 cut(s)	234
MboII	GAAGA	5 cut(s)	16, 169, 262, 409, 529
MhlI	GDGCHC	2 cut(s)	9, 17
MluCI	AATT	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	406
MnlI	CCTC	7 cut(s)	80, 86, 94, 107, 119, 278, 556
MseI	TTAA	1 cut(s)	215
MspI	CCGG	9 cut(s)	195, 225, 261, 337, 406, 420, 440, 456, 555
MspR9I	CCNGG	9 cut(s)	196, 225, 261, 262, 406, 420, 421, 496, 555
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	496
MwoI	GCNNNNNNNGC	3 cut(s)	146, 337, 559
NciI	CCSGG	8 cut(s)	196, 225, 261, 262, 406, 420, 421, 555
NlaIV	GGNNCC	2 cut(s)	6, 266
PasI	CCCWGGG	1 cut(s)	495
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 330
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	228
Pfl23II	CGTACG	1 cut(s)	480
PflFI	GACNNNGTC	1 cut(s)	530
PkrI	GCNGC	1 cut(s)	249
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	494
PspGI	CCWGG	1 cut(s)	494
PspLI	CGTACG	1 cut(s)	480
PspN4I	GGNNCC	2 cut(s)	6, 266
PsyI	GACNNNGTC	1 cut(s)	530
RsaI	GTAC	2 cut(s)	482, 567
RsaNI	GTAC	2 cut(s)	481, 566
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	1 cut(s)	248
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	9 cut(s)	196, 225, 261, 262, 406, 420, 421, 496, 555
SduI	GDGCHC	2 cut(s)	9, 17
SetI	ASST	7 cut(s)	63, 83, 306, 322, 353, 378, 519
SmaI	CCCGGG	2 cut(s)	262, 421
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	4 cut(s)	73, 106, 204, 416
StyD4I	CCNGG	9 cut(s)	194, 223, 259, 260, 404, 418, 419, 494, 553
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	34, 437
TaqI	TCGA	3 cut(s)	57, 99, 429
TaqII	GACCGA	1 cut(s)	294
TasI	AATT	1 cut(s)	143
TatI	WGTACW	1 cut(s)	565
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	169, 301
TspGWI	ACGGA	1 cut(s)	244
TspMI	CCCGGG	2 cut(s)	260, 419
TspRI	CASTG	1 cut(s)	376
Tth111I	GACNNNGTC	1 cut(s)	530
XmaI	CCCGGG	2 cut(s)	260, 419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.